DY259973 | Citrus Genome Database

Overview


Name	DY259973
Unique Name	DY259973
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	629

Libraries


Library Name	Type
Fruit-TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.311e-31
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 3

Query:   78 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            K  +K +HP E R+ E  +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N +P
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIP 85

HSP 2 Score: 43.8986 bits (102), Expect = 9.311e-31
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 1

Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 423
            PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   85 PPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116

BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.311e-31
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 3

Query:   78 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            K  +K +HP E R+ E  +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N +P
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIP 85

HSP 2 Score: 43.8986 bits (102), Expect = 9.311e-31
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 1

Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 423
            PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   85 PPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116

BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.311e-31
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 3

Query:   78 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            K  +K +HP E R+ E  +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N +P
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIP 85

HSP 2 Score: 43.8986 bits (102), Expect = 9.311e-31
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 1

Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 423
            PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   85 PPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116

BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 9.311e-31
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 3

Query:   78 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            K  +K +HP E R+ E  +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N +P
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIP 85

HSP 2 Score: 43.8986 bits (102), Expect = 9.311e-31
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 1

Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 423
            PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   85 PPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116

BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.311e-31
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 3

Query:   78 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            K  +K +HP E R+ E  +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N +P
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIP 85

HSP 2 Score: 43.8986 bits (102), Expect = 9.311e-31
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 1

Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 423
            PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   85 PPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116

BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRL1_CAVPO (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.311e-31
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 3

Query:   78 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            K  +K +HP E R+ E  +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N +P
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIP 85

HSP 2 Score: 43.8986 bits (102), Expect = 9.311e-31
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 1

Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 423
            PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   85 PPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116

BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 9.311e-31
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 3

Query:   78 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            K  +K +HP E R+ E  +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N +P
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIP 85

HSP 2 Score: 43.8986 bits (102), Expect = 9.311e-31
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 1

Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 423
            PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   85 PPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116

BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.915e-30
Identity = 48/81 (59.26%), Postives = 66/81 (81.48%), Query Frame = 3

Query:   87 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            +K EHP E+R++E  +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++RKRI L  E A+F FV N++P
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIP 85

HSP 2 Score: 42.743 bits (99), Expect = 5.915e-30
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 1

Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 426
            PPT+A M  +Y+E+ +ED FLY+ YS E+ +G+
Sbjct:   85 PPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117

BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.915e-30
Identity = 48/81 (59.26%), Postives = 66/81 (81.48%), Query Frame = 3

Query:   87 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            +K EHP E+R++E  +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++RKRI L  E A+F FV N++P
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIP 85

HSP 2 Score: 42.743 bits (99), Expect = 5.915e-30
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 1

Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 426
            PPT+A M  +Y+E+ +ED FLY+ YS E+ +G+
Sbjct:   85 PPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117

BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 5.915e-30
Identity = 48/81 (59.26%), Postives = 66/81 (81.48%), Query Frame = 3

Query:   87 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            +K EHP E+R++E  +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++RKRI L  E A+F FV N++P
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIP 85

HSP 2 Score: 42.743 bits (99), Expect = 5.915e-30
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 1

Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 426
            PPT+A M  +Y+E+ +ED FLY+ YS E+ +G+
Sbjct:   85 PPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117

The following BLAST results are available for this feature:

BLAST of DY259973 vs. ExPASy Swiss-Prot

BLAST of DY259973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83


Match Name	E-value	Identity	Description
GBRL1_XENTR	9.311e-31	59.52	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRL1_XENLA	9.311e-31	59.52	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRL1_RAT	9.311e-31	59.52	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRL1_MOUSE	9.311e-31	59.52	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRL1_HUMAN	9.311e-31	59.52	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRL1_CAVPO	9.311e-31	59.52	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRL1_BOVIN	9.311e-31	59.52	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRAP_RAT	5.915e-30	59.26	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRAP_RABIT	5.915e-30	59.26	Gamma-aminobutyric acid receptor-associated protei...	[more]
GBRAP_MOUSE	5.915e-30	59.26	Gamma-aminobutyric acid receptor-associated protei...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAP10YN02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY259973 ID=DY259973; Name=DY259973; organism=Citrus clementina; type=EST; length=629bp
CTTGCCTGCTTTTGTTGCTTATCAATTTTGCGATCTCAGCTACATTTCTC
TCTGAAACGGAAAGCACGCTCATGGCGAAAAATTCTTTTAAGCTAGAACA
CCCCCTCGAGAGGAGGCAGGCTGAAGCTGCTCGCATCAGAGACAAGTATC
CAGACAGAATCCCAGTGATTGTGGAGAGGGCCGAAAAAAGTGATGTACCT
GAAATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTGGCCA
GTTTGTGTATGTGGTGCGAAAGAGGATCAAGCTCACTCCTGAGAAGGCTA
TTTTCATTTTTGTGAAAAACATTCTGCCCACCCACTGCGGCAATGATGTC
TGCCATATATGAGGAAAACAGGGATGAAGATGGCTTCCTTTACATGACCT
ACAGTGGGGAGAATACATTTGGGATCTTCTGAAGTGTGATCAAGCTACTA
TTATGTGAATAATGCTTCACGAAGTTAGGTGAAGAAGGGGTTAAGTTGTA
AATAGTTCTAAGTTCCATTACTTTGGAATTTTCTTTTAGTTAAGGGTATT
AAATGTAACAACCCTAAAAAATTGGGATCCACAAACTATTTACATAAAAT
TCCAACAGTTTTCTCTATGCCCTCGCTTG