DY259973

Overview
NameDY259973
Unique NameDY259973
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.915e-30
Identity = 48/81 (59.26%), Postives = 66/81 (81.48%), Query Frame = 3 
Query:   87 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            +K EHP E+R++E  +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++RKRI L  E A+F FV N++P
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIP 85

HSP 2 Score: 42.743 bits (99), Expect = 5.915e-30
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 426
            PPT+A M  +Y+E+ +ED FLY+ YS E+ +G+
Sbjct:   85 PPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117
[Close]
BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 5.915e-30
Identity = 48/81 (59.26%), Postives = 66/81 (81.48%), Query Frame = 3 
Query:   87 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            +K EHP E+R++E  +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++RKRI L  E A+F FV N++P
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIP 85

HSP 2 Score: 42.743 bits (99), Expect = 5.915e-30
Identity = 16/33 (48.48%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 426
            PPT+A M  +Y+E+ +ED FLY+ YS E+ +G+
Sbjct:   85 PPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117
[Close]
BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRL2_RAT (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Rattus norvegicus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.306e-29
Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:   87 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            FK +H LE R  E+A+IR KYPDR+PVIVE+   S + +IDK+KYLVP+D+TV QF++++RKRI+L  EKAIF+FV   +P
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVP 85

HSP 2 Score: 48.1358 bits (113), Expect = 1.306e-29
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 423
            P ++  M  +YE+ +DEDGFLY+ YSGENTFG
Sbjct:   85 PQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
[Close]
BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.306e-29
Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:   87 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            FK +H LE R  E+A+IR KYPDR+PVIVE+   S + +IDK+KYLVP+D+TV QF++++RKRI+L  EKAIF+FV   +P
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVP 85

HSP 2 Score: 48.1358 bits (113), Expect = 1.306e-29
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 423
            P ++  M  +YE+ +DEDGFLY+ YSGENTFG
Sbjct:   85 PQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
[Close]
BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.306e-29
Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:   87 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            FK +H LE R  E+A+IR KYPDR+PVIVE+   S + +IDK+KYLVP+D+TV QF++++RKRI+L  EKAIF+FV   +P
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVP 85

HSP 2 Score: 48.1358 bits (113), Expect = 1.306e-29
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 423
            P ++  M  +YE+ +DEDGFLY+ YSGENTFG
Sbjct:   85 PQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
[Close]
BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.306e-29
Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = 3 
Query:   87 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            FK +H LE R  E+A+IR KYPDR+PVIVE+   S + +IDK+KYLVP+D+TV QF++++RKRI+L  EKAIF+FV   +P
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVP 85

HSP 2 Score: 48.1358 bits (113), Expect = 1.306e-29
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 423
            P ++  M  +YE+ +DEDGFLY+ YSGENTFG
Sbjct:   85 PQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
[Close]
BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.043e-28
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 3 
Query:   78 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            K  +K  HP E R+ E  +IR KYPDR+P+IVE+A K+ VP++D++KYLVP+DLT GQF  ++RKRI L PE A+F FV N +P
Sbjct:    2 KFQYKEVHPFEYRKKEGEKIRKKYPDRVPLIVEKAPKARVPDLDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIP 85

HSP 2 Score: 43.1282 bits (100), Expect = 4.043e-28
Identity = 16/32 (50.00%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 423
            PPT+A M  +YE++ +ED FLY+ YS E+ +G
Sbjct:   85 PPTSATMGQLYEDSHEEDDFLYVAYSNESVYG 116
[Close]
BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: LGG1_CAEEL (Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.153e-27
Identity = 51/84 (60.71%), Postives = 69/84 (82.14%), Query Frame = 3 
Query:   78 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            K ++K E+  E+R+AE  +IR KYPDRIPVIVE+A KS + ++DKKKYLVP+DLTVGQF +++RKRI+L PE A+F FV N++P
Sbjct:    2 KWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIP 85

HSP 2 Score: 35.039 bits (79), Expect = 1.153e-27
Identity = 13/32 (40.62%), Postives = 21/32 (65.62%), Query Frame = 1 
Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 423
            P T   M  +Y+++ +ED FLY+ YS E+ +G
Sbjct:   85 PQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116
[Close]
BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: ATG8I_ARATH (Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.339e-27
Identity = 44/82 (53.66%), Postives = 62/82 (75.61%), Query Frame = 3 
Query:   84 SFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            SFK ++ L+ R AE+  I  KYP RIPVI E+  K+D+P I+KKK+LVP D++VGQF+Y++  R+ L+P KA+F+FV N LP
Sbjct:    3 SFKEQYTLDERLAESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFIYILSARLHLSPGKALFVFVNNTLP 84

HSP 2 Score: 48.1358 bits (113), Expect = 3.339e-27
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:  328 PPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 423
            P TAA+M ++YE  +D+DGF+YM YS E TFG
Sbjct:   84 PQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115
[Close]
BLAST of DY259973 vs. ExPASy Swiss-Prot
Match: ATG8D_ORYSJ (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.274e-25
Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 3 
Query:   72 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILP 329
            M    FK E  LE R  E+A +   YPDRIPVIVE+  +S++PE++K+KYLVP ++ VGQF++++R R+ L+P  A+F+FV N LP
Sbjct:    1 MKPRPFKEEFTLEERAKESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQFIFILRSRLHLSPGTALFVFVNNTLP 86

HSP 2 Score: 42.743 bits (99), Expect = 2.274e-25
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:  328 PPTAAMMSAIYEENRDE-DGFLYMTYSGENTFG 423
            P TA +M ++YE  +DE DGFLY+ YS E TFG
Sbjct:   86 PQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118
The following BLAST results are available for this feature:
BLAST of DY259973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRAP_HUMAN5.915e-3059.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_BOVIN5.915e-3059.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_RAT1.306e-2958.02Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_MOUSE1.306e-2958.02Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN1.306e-2958.02Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN1.306e-2958.02Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL3_HUMAN4.043e-2855.95Gamma-aminobutyric acid receptor-associated protei... [more]
LGG1_CAEEL1.153e-2760.71Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 P... [more]
ATG8I_ARATH3.339e-2753.66Autophagy-related protein 8i OS=Arabidopsis thalia... [more]
ATG8D_ORYSJ2.274e-2550.00Autophagy-related protein 8D OS=Oryza sativa subsp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259973 ID=DY259973; Name=DY259973; organism=Citrus clementina; type=EST; length=629bp
CTTGCCTGCTTTTGTTGCTTATCAATTTTGCGATCTCAGCTACATTTCTC
TCTGAAACGGAAAGCACGCTCATGGCGAAAAATTCTTTTAAGCTAGAACA
CCCCCTCGAGAGGAGGCAGGCTGAAGCTGCTCGCATCAGAGACAAGTATC
CAGACAGAATCCCAGTGATTGTGGAGAGGGCCGAAAAAAGTGATGTACCT
GAAATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTGGCCA
GTTTGTGTATGTGGTGCGAAAGAGGATCAAGCTCACTCCTGAGAAGGCTA
TTTTCATTTTTGTGAAAAACATTCTGCCCACCCACTGCGGCAATGATGTC
TGCCATATATGAGGAAAACAGGGATGAAGATGGCTTCCTTTACATGACCT
ACAGTGGGGAGAATACATTTGGGATCTTCTGAAGTGTGATCAAGCTACTA
TTATGTGAATAATGCTTCACGAAGTTAGGTGAAGAAGGGGTTAAGTTGTA
AATAGTTCTAAGTTCCATTACTTTGGAATTTTCTTTTAGTTAAGGGTATT
AAATGTAACAACCCTAAAAAATTGGGATCCACAAACTATTTACATAAAAT
TCCAACAGTTTTCTCTATGCCCTCGCTTG
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