DY259984

Overview
NameDY259984
Unique NameDY259984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length995
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.299e-18
Identity = 59/200 (29.50%), Postives = 91/200 (45.50%), Query Frame = 1
Query:  142 GWQSGHATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG---GIRFTVNGHSYFNLVLVTNVRGAGDVHSVSI-----KGSKTGWQAMSRNWGPNWQSNS 693
            GW  G AT+Y              Y G++    + +  AA S +++ +G  CGSCY++KC  +P  C    + V  T+ CP         GG C     HFD++  AF  +A+         AG +P+ + R+PC  +G     R     + Y+  VLV +  G GD+ +V +      G    W AM ++WG  W+ NS
Sbjct:   37 GWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CSGKPVTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNS 226          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 5.255e-16
Identity = 59/197 (29.95%), Postives = 92/197 (46.70%), Query Frame = 1
Query:  145 WQSGHATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIA------QYR-AGIVPISFRRIPCAKKGGIRFT----VNGHSYFNLVLVTNVRGAGDVHSVSI--KGSKTGWQAMSRNWGPNWQSNS 693
            W +G AT+Y              Y G ++   + +  AA S +++ +GL CGSCY++KC  +   C    + V  T+ CP         GG C     HFD++  AF  +A      Q R AG++ I + R+PC   GG++ T    V  +  +  VLV    G GD+  V +   G+   W  M ++WG  W+ N+
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CSGNPVTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWKLNA 222          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.864e-16
Identity = 58/195 (29.74%), Postives = 88/195 (45.13%), Query Frame = 1
Query:  142 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG-GIRFTVN--GHSYFNLVLVTNVRGAGDVHSVSIKGSKTGWQAMSRNWGPNWQSNS 693
            GW +  AT+Y              Y     Q  + +  AA S +L+  G  CG+CYE+KC  +   C      V  T+ CP         GG C     HFDM+  +   +A+         AGI+ + +RR+PC   G  I F V+   + ++  VL+    G GD+++V +  +  GW  M +NWG  W+ NS
Sbjct:   63 GWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAA-CSGQPATVVITDECP---------GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWRYNS 247          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.294e-14
Identity = 62/213 (29.11%), Postives = 92/213 (43.19%), Query Frame = 1
Query:  118 GTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWC-LPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG-GIRFTV--NGHSYFNLVLVTNVRGAGDVHSV----------SIKGSKTG-WQAMSRNWGPNWQ 684
            G+ G  GGGW +  AT+Y               G  N+    +   T+  +  LF +G  CGSCY+++C   P    LP ++I+T  N+ P +              L HFD++  AF  +A+         AGI+ I FRR+PC   G  + F V    +  +  +LV    G GDV  V           + G+ TG W  M  +WG  W+
Sbjct:   83 GSSGGGGGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPACSGLPETVIITDMNYYPVS--------------LYHFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSNPVYMAILVEYENGDGDVVQVDLMESRYSTGGVDGTPTGVWTPMRESWGSIWR 281          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.766e-14
Identity = 59/195 (30.26%), Postives = 88/195 (45.13%), Query Frame = 1
Query:  145 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIA------QYR-AGIVPISFRRIPCAKKGGIRFTV-----NGHSYFNLVLVTNVRGAGDVHSVSI--KGSKTGWQAMSRNWGPNWQ 684
            W +G AT+Y              Y     Q  + +  AA S +++ +GL CGSCY++KC  +   C    + V  T+ CP         GG C     HFD++  AF  +A      Q R AG++ I + R+PC   GG+  T      +  SYF  VLV    G GD+  + +   G+   W  M ++WG  W+
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSA-CSGNPVTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVMLTFAVDAGSNPSYF-AVLVKYENGDGDLSGMDLMQTGAGAAWTPMQQSWGAVWK 219          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.604e-12
Identity = 59/192 (30.73%), Postives = 82/192 (42.71%), Query Frame = 1
Query:  145 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQ-GYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIA-------QYRAGIVPISFRRIPCAKKGG--IRFTVN-GHSYFNLVLVTNVR-GAGDVHSVSIKGSKTG-WQAMSRNWGPNW 681
            W    AT+Y              YG L       T   A+S  LF  G  CG+CY+++C  D   C   ++ V  T+ CP         GG C     HFD++  AF ++A           G + + +RR  C K GG  I F VN G + F L L+     G GD+ S+ +K + +  WQ M   WG  W
Sbjct:   45 WHPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRC-LDASICSRRAVTVIVTDECP---------GGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTAC-KYGGKNIAFHVNEGSTTFWLSLLVEFEDGDGDIGSMQLKQANSAQWQDMKHIWGATW 225          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.853e-12
Identity = 61/209 (29.19%), Postives = 88/209 (42.11%), Query Frame = 1
Query:  133 YGGGWQSGHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG-GIRFTVNGHS---YFNLVLVTNVRGAGDVHSVSIKGSKTG-------WQAMSRNWGPNWQSNS 693
            YG GW    AT+Y               G  N+    + + T+  +  +F +G  CGSCY+++C  DP  C     ++I+T  N+ P                  HFD++  AF  +A+         +GI+ I FRR+PC   G  I F V   S   YF  VLV      GDV  V +  SK+        W  M  +WG  W+ +S
Sbjct:   40 YGSGWLPARATWYGAPTGAGPDDNGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPS-CSGNIETVIITDMNYYP--------------VARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGSNPVYF-AVLVEYEDLDGDVVQVDLMESKSAYGGATGVWTPMRESWGSIWRLDS 232          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.898e-11
Identity = 56/198 (28.28%), Postives = 86/198 (43.43%), Query Frame = 1
Query:  145 WQSGHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWC-LPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG-GIRFTVNGHS---YFNLVLVTNVRGAGDVHSVSI-KGSKTGWQAMSRNWGPNWQSNS 693
            W+   AT+Y               G  N     + + T+  +  +F +G  CGSCY+++C N P     P ++I+T  N+ P +                HFD++  AF  +A+         AGI+ I F+R+PC   G  + F V   S   YF  VLV    G GDV  V + + +   W  M  +WG  W+ +S
Sbjct:   42 WEVARATWYGAPTGAGPDDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPACSGNPETVIITDMNYYPVS--------------KYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPCNFPGLKVTFHVEEGSNPVYF-AVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDS 224          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.898e-11
Identity = 53/191 (27.75%), Postives = 80/191 (41.88%), Query Frame = 1
Query:  145 WQSGHATFYXXXXXXXXXXXXXXYGNLYS-QGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIA-------QYRAGIVPISFRRIPCAKKG-GIRFTVNGHS--YFNLVLVTNVRGAGDVHSVSIK-GSKTGWQAMSRNWGPNW 681
            W    AT+Y              YG L   +       A++  LF NG  CG+CY+++C  D   C   ++ V  T+ CP            C+    HFD++   F ++A           G++P+ +RR  C  +G  I F VN  S  ++  +LV    G GD+ S+ I+      W  M   WG NW
Sbjct:   36 WLPAVATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRC-LDKSICSRRAVTVIITDECP-----------GCSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 214          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.898e-11
Identity = 56/201 (27.86%), Postives = 90/201 (44.78%), Query Frame = 1
Query:  133 YGGGWQSGHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKGGIRFTVN---GHSYFNLVLVTNVRGAGDVHSVSI--KGSKTGWQAMSRNWGPNWQSNS 693
            YG  W    AT+Y                Y ++    + +  A  +  +F +GL CGSC+E+KC+  P  C    ++V  T+     +A              HFD+A  AF  +A+        +AGI+ + FRR+ C     + F +    G +Y  L LV  V G GD+ +V +  KGS T ++ +  +WG  W+ +S
Sbjct:   46 YGKDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDK-PVECSGKPVVVHITDMNYEPIA------------AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSKVTFHLEKGCGPNYLAL-LVKYVDGDGDIVAVDVKEKGSDT-YEPLKHSWGAIWRKDS 231          
The following BLAST results are available for this feature:
BLAST of DY259984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
EXB14_ORYSJ4.299e-1829.50Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXB15_ORYSJ5.255e-1629.95Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB11_ORYSJ6.864e-1629.74Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB7_ORYSJ1.294e-1429.11Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB18_ORYSJ3.766e-1430.26Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB16_ORYSJ4.604e-1230.73Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB6_ORYSJ7.853e-1229.19Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB3_ORYSJ3.898e-1128.28Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB3_ARATH3.898e-1127.75Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]
EXB10_MAIZE3.898e-1127.86Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259984 ID=DY259984; Name=DY259984; organism=Citrus clementina; type=EST; length=995bp
CTTTTTCTTAACAAATAAACACATAAACATAAGCAGCCAGCAGTAGCAGC
CATGGCCAATATTGCAGCATCATCTAGCGTTGCTCTCCTTTTGTTTGTGC
TCAATTTTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTGGGTGGCAA
AGTGGCCATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGCACAATGGG
TGGTGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGGGACTAACA
CTGCAGCACTTAGTACCGCTCTATTCAACAATGGCCTAAGCTGTGGTTCA
TGCTATGAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTCCCCGGCTC
CATCATTGTCACCGCCACCAACTTCTGCCCACCTAACCTTGCCCTGTCTA
ACGACAACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTGACATGGCT
GAGCCCGCTTTCTTGCAAATTGCCCAATACCGCGCCGGCATCGTCCCAAT
TTCCTTCAGAAGGATCCCGTGTGCGAAGAAAGGAGGAATAAGGTTTACCG
TCAATGGACACTCATACTTCAACCTGGTTTTGGTCACAAATGTCCGAGGA
GCAGGAGATGTACATTCAGTATCAATCAAGGGTTCAAAGACTGGATGGCA
AGCAATGTCAAGGAACTGGGGCCCAAATTGGCAGAGCAATTCTTATCTTA
ACGGCCAAAGTCTTTCTTTCCAGTGACAGCCAGTGACGGCAGGAATGGGA
CTCACCACCATGTTGTGCCCGCCAATTTGGCATTTTGGGCCAACCCTTGA
GGGTGGGTCCGTTTTAAATTTTAAAAATTTAAAAAAGTGGAACCAAAATT
GGAAATTTAATTGAAATTTGGCCTTTGGGTTTGGGAAAGGAAAAAGGGTG
AAAAAAGGGGGTAAGGGAAAGCCGAAAGGCCGGCCCCAAGTTGGCTCGGC
TTTGGTACCGGGGGGGGCCCCGTTGCGCCCCCCCCCCAAGCCCTC
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