DY259985

Overview
NameDY259985
Unique NameDY259985
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length989
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1384 contig Ccv1_Contig1384:1..989. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_PROM4 (Trigger factor OS=Prochlorococcus marinus (strain MIT 9211) GN=tig PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.780e-12
Identity = 42/173 (24.28%), Postives = 85/173 (49.13%), Query Frame = 3
Query:  306 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEVKWKPENGTKIRRML*KKIMDKPAHQAAEKEIRTPHKSPGITENSPPHKTT 824
            ++V     P+S + + +E+    CK+SY++ L++L K   +PGFR GK+P++VL+  VG + ++ + +E +L+   P A+   +   L +   ++  F  + +N++  + L+  +  D++P  + K   G  +                AEK +  P K   + E S    +T
Sbjct:    6 LKVKTKSMPDSRLAVELEISAKQCKESYQQALSKLSKTANLPGFRKGKVPQAVLLQQVGAKRIQASAIEKLLEVVWPQALQQESIEPLCEP-ELIGGFEALLENFNPDSKLTLTLETDISPIPQLKSSKGLTVE---------------AEKVVFDPKKIDELIEQSRKQLST 162          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_PROM0 (Trigger factor OS=Prochlorococcus marinus (strain MIT 9301) GN=tig PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.780e-12
Identity = 38/131 (29.01%), Postives = 64/131 (48.85%), Query Frame = 3
Query:  312 VTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEVKWKPENGTKI 704
            V  +P P S +   +E+P   CK      ++ + +  KIPGFR GKIP+ VL+  +G   +  + +E I+ ++   A+   +   L +   +V  F  +   +S   SL   +  DVAPE+K K   G  +
Sbjct:    8 VKTTPLPQSRISFELEIPSETCKTCVNETISTISRSAKIPGFRLGKIPKQVLIQRIGITQLHASALEKIIDKSWQEALKIKSIEPLSEP-ELVDGFESLLAKFSPEKSLKVTLQTDVAPELKLKKSKGLSV 137          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_PROMT (Trigger factor OS=Prochlorococcus marinus (strain NATL2A) GN=tig PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.327e-11
Identity = 37/132 (28.03%), Postives = 71/132 (53.79%), Query Frame = 3
Query:  300 ADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEVKWKPENG 695
            A + V  S +PNS + + VEVP   CK+SY   L++L + + IPGFR GK+P++V++  +G + ++ + +ES+L++     +       L +   +   F  + +N++   +L   +  D+ P    K  +G
Sbjct:    4 AKLNVKTSAKPNSRIAVEVEVPANRCKNSYDEALSKLSRSISIPGFRKGKVPKTVVIQQLGVKRIQASALESLLQKVWTETLDQEGIEPLCEP-ELEDGFETILENFNPEKTLILKLETDITPIPTLKKSSG 134          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_PROM1 (Trigger factor OS=Prochlorococcus marinus (strain NATL1A) GN=tig PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.327e-11
Identity = 37/132 (28.03%), Postives = 71/132 (53.79%), Query Frame = 3
Query:  300 ADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEVKWKPENG 695
            A + V  S +PNS + + VEVP   CK+SY   L++L + + IPGFR GK+P++V++  +G + ++ + +ES+L++     +       L +   +   F  + +N++   +L   +  D+ P    K  +G
Sbjct:    4 AKLNVKTSSKPNSRIAVEVEVPANRCKNSYDEALSKLSRSISIPGFRKGKVPKTVVIQQLGVKRIQASALESLLQKVWTETLDQEGIEPLCEP-ELEDGFETILENFNPEKTLILKLETDITPIPTLKKSSG 134          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_SYNP6 (Trigger factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tig PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.733e-11
Identity = 38/121 (31.40%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  306 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAP 668
            I+VT+   P S V L +EV     +  Y+R L  L ++V+ PGFRPGK+P  VL+  +GE  +K   +E +++++L  A+   +  A+  + ++ + F  +   +    S S++  VDV P
Sbjct:    3 IKVTQEKLPASRVGLQIEVSGEQSRQVYERTLTRLSREVRFPGFRPGKVPRPVLIQRLGETALKANAIEDLVQQSLESAIAQESIPAI-GNYQLSSDFETLVAAFQPGKSFSFEASVDVQP 122          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_SYNE7 (Trigger factor OS=Synechococcus elongatus (strain PCC 7942) GN=tig PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.733e-11
Identity = 38/121 (31.40%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  306 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAP 668
            I+VT+   P S V L +EV     +  Y+R L  L ++V+ PGFRPGK+P  VL+  +GE  +K   +E +++++L  A+   +  A+  + ++ + F  +   +    S S++  VDV P
Sbjct:    3 IKVTQEKLPASRVGLQIEVSGEQSRQVYERTLTRLSREVRFPGFRPGKVPRPVLIQRLGETALKANAIEDLVQQSLESAIAQESIPAI-GNYQLSSDFETLVAAFQPGESFSFEASVDVQP 122          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_CYAP8 (Trigger factor OS=Cyanothece sp. (strain PCC 8801) GN=tig PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.264e-11
Identity = 33/123 (26.83%), Postives = 68/123 (55.28%), Query Frame = 3
Query:  306 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEV 674
            ++VT+   P+S + L +E+     K +Y+  +N L +   IPGFR GK+P  +L+  +G + +K  T++ +++ +L  A+   +  ++ D   + +KF E+ + +     L++   +DV P V
Sbjct:    1 MKVTQEKLPDSQIGLEIEISAEASKKAYETKVNTLARTANIPGFRKGKVPRQILLQRIGTEYIKATTLQELIEDSLKAAIKQESLESIGD-FELKSKFDELVQQFKPGEPLTFSAAIDVPPTV 122          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_PROMP (Trigger factor OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=tig PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.956e-11
Identity = 41/144 (28.47%), Postives = 68/144 (47.22%), Query Frame = 3
Query:  330 PNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMKKNYSSPNSLSYDVLVDVAPEVKWKPENGTKIRRML*KKIMDKPAHQAAEK 761
            P S + L +E+P   CK      +N + +  KIPGFR GKIP+ VL+  +G   +  + +E I+ ++   A+   +   L +   +V  F  + K ++    L   +  D+APE K K   G  +  +   K   K   +A EK
Sbjct:   14 PQSRIALELEIPSNTCKSCVNETINSISRSAKIPGFRLGKIPKQVLIQRIGITQLHASALEKIIDKSWNQALKMESIEPLSEP-ELVDGFESILKFFNPEKPLKITLQTDIAPEFKLKKSKGLSV-EIKKSKFDPKSIDEALEK 155          
BLAST of DY259985 vs. ExPASy Swiss-Prot
Match: TIG_SYNY3 (Trigger factor OS=Synechocystis sp. (strain PCC 6803) GN=tig PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.861e-11
Identity = 38/139 (27.34%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  306 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFS------EMKKNYSSPNSLSYDVLVDVAPEVKWKPENGTKI 704
            ++VT+   P+S V L +E+P    K  Y+ V+ +L + V IPGFR GK+P ++++  +G+  +K   +E ++         S+     ++ + I+  FS       + + +     L+  V  DV PE +++PE+  KI
Sbjct:    1 MKVTQEKLPDSQVGLEIEIPATASKKVYENVVKKLTRTVNIPGFRRGKVPRAIVIQRLGQSYIKATAIEELID-------DSIKAAVKQEELPIIGNFSLRSDMENLIQIFDPEAPLTIKVAADVFPEAEYEPESYKKI 132          
The following BLAST results are available for this feature:
BLAST of DY259985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
TIG_PROM47.780e-1224.28Trigger factor OS=Prochlorococcus marinus (strain ... [more]
TIG_PROM07.780e-1229.01Trigger factor OS=Prochlorococcus marinus (strain ... [more]
TIG_PROMT1.327e-1128.03Trigger factor OS=Prochlorococcus marinus (strain ... [more]
TIG_PROM11.327e-1128.03Trigger factor OS=Prochlorococcus marinus (strain ... [more]
TIG_SYNP61.733e-1131.40Trigger factor OS=Synechococcus sp. (strain ATCC 2... [more]
TIG_SYNE71.733e-1131.40Trigger factor OS=Synechococcus elongatus (strain ... [more]
TIG_CYAP82.264e-1126.83Trigger factor OS=Cyanothece sp. (strain PCC 8801)... [more]
TIG_PROMP2.956e-1128.47Trigger factor OS=Prochlorococcus marinus subsp. p... [more]
TIG_SYNY33.861e-1127.34Trigger factor OS=Synechocystis sp. (strain PCC 68... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259985 ID=DY259985; Name=DY259985; organism=Citrus clementina; type=EST; length=989bp
GCTCTTTTTTATCATTACACAATAAACCGGGAAAAAAAATGGAGCTTTGC
ATCACCAACTCAACAAGAATCCTCAACTTGAACTCTCTCAACAGAACAGG
GCTTCCTCTTTCTGTTTCTCTAAAGAACTCAACTGTTGAGTTCATGAACC
AAAACTACTTCAATTCTCAGAAACTGTCATCATTTTCCCGCCAAATTCAC
TTATATCTCCATCAACCTCAATTTCATCGAAGCCCAGTTCGTATCTTTGC
TTCTTCATCCTCCTCGGTGGCTCTGGGACCCGAGAAGGATCGGCTTCCGG
CTGATATCGAGGTCACAGAGAGTCCAGAACCCAATTCGACAGTGAGGCTG
AGTGTAGAAGTTCCAGAGGCGGTATGCAAGGATAGCTACAAAAGGGTCCT
TAATGAGTTGATGAAGCAAGTCAAGATTCCTGGATTTCGTCCTGGGAAGA
TTCCAGAGAGTGTTCTTGTAGGTTTTGTTGGGGAGCAGAATGTTAAAAAG
GCTACGGTTGAATCTATTCTGAAGAGGACCCTTCCTCATGCCATGACTTC
GGTGACTGGAAGGGCTTTGAGAGACTCCGTCCGCATTGTGACTAAGTTTT
CCGAAATGAAGAAGAACTATTCTTCTCCCAACTCTCTCAGTTATGATGTG
CTTGTCGATGTTGCGCCTGAAGTCAAATGGAAACCAGAAAATGGAACAAA
AATTCGAAGAATGTTGTAAAAAAAGATAATGGACAAACCCGCCCACCAAG
CTGCTGAAAAAGAAATAAGAACTCCCCATAAGTCCCCTGGGATCACTGAA
AATTCCCCCCCACACAAGACTACCGGGCCGTGACCTTGCCATCCCTGACT
AATCCCCCCCCACCACCAATTAAATAGAAATCCAACGCTCCCAATTATTC
CCCCATCGCAAAAACCCATCGCATTCTTTTTCAATAACAAAACTTGGGAC
ACAAAGTTTCCTCCAGGCTTCACCCAAATTCCCCAAACC
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