DY259988

Overview
NameDY259988
Unique NameDY259988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1032
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_SALA4 (Glucose-1-phosphate adenylyltransferase OS=Salmonella agona (strain SL483) GN=glgC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.232e-24
Identity = 81/294 (27.55%), Postives = 135/294 (45.92%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR---WRFPTANDFGSEIIPASANEQFLKAYLF-----------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP------XXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            V+IL+GDH+Y+ DY   + +H + GA  T++C+P+  + A+ FG+M ++   ++  F EKP      AM  D +              +ASMG+Y+F  + L  LL        +++DFG +IIP    E    A+ F             YW D+GT+ ++++ANL L +  P    YD   PI T   +LPP                     G  I+ S +  SV+  R RIN+  ++               + A L PE    V +G + +++ C++D+   I + ++I
Sbjct:  136 VVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIKEATAFGVMAVDESDKIIDFVEKPANP--PAMPGDAS------------KALASMGIYVFDADYLYELLAADDKDDASSHDFGKDIIPKITREGMAYAHPFPLSCVQSDPQAEPYWRDVGTLEAYWKANLDLASVTPELDMYDQNWPIRTHMESLPPAKFVQDRSGSHGMTLNSLVSGGCIISGSVVVQSVLFPRVRINSFCNI---------------DSAVLLPE----VWVGRSCRLRRCVIDRACIIPEGMVI 396          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_RHIE6 (Glucose-1-phosphate adenylyltransferase OS=Rhizobium etli (strain CIAT 652) GN=glgC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.232e-24
Identity = 69/199 (34.67%), Postives = 106/199 (53.27%), Query Frame = 1
Query:   10 IDDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP--YIASMGVYLFKKEILLNLLRWRFPTAN---DFGSEIIP------ASANEQFLKAYLFND-----YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 558
            ++ ++IL+GDH+Y+MDY   +Q H  SGAD+TI CL +    A+ FG+M +N++  + +F EKP                       +KP   +ASMG+Y+F  + LL+ LR      N   DFG +IIP       +   +F K+ + +D     YW D+GTI ++++AN+ LTA  P    YD + PI+T     PP
Sbjct:  126 VEYMVILAGDHVYKMDYEWMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNDKDEILAFVEKP----------------ADPPGIPDKPDFALASMGIYVFHTKFLLDALRRDAADPNSSRDFGKDIIPYIVQNGKAVAHRFAKSCVRSDFEHEPYWRDVGTIDAYWQANIDLTAIVPELDIYDKSWPIWTYAEITPP 308          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_DESRM (Glucose-1-phosphate adenylyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glgC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.232e-24
Identity = 84/278 (30.22%), Postives = 124/278 (44.60%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR--WRFP-TANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            +LILSGDH+Y+MDY   +  H++  AD TI+ + +  + AS FG+M    + R+  F EKPK                       +  +ASMGVY+F  E+L   L    R P ++NDFG  IIP      Q + AY F  YW D+GTI S ++AN+ L    P     D    IY+   + PP                    S+ +  S++     +  NV+    + PG D                    IG+ + I+E ++  N +IGKNVI+
Sbjct:  122 ILILSGDHIYKMDYSLMLDFHKEKQADATIAVIEVPWQEASGFGIMNTAKDARIVEFEEKPK---------------------VPRSNLASMGVYIFNWELLKAYLEEDERNPRSSNDFGKNIIPLMLEAGQRMFAYPFKGYWRDVGTIESLWQANMDLLLENPKLDLNDQKWRIYSVTPHQPPQY---------------VAPSARVNCSLINEGCMVFGNVY-HSILFPGVD--------------------IGKGSTIRESVILSNVKIGKNVIV 342          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_RHIEC (Glucose-1-phosphate adenylyltransferase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=glgC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.222e-24
Identity = 70/199 (35.18%), Postives = 108/199 (54.27%), Query Frame = 1
Query:   10 IDDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP--YIASMGVYLFKKEILLNLLR--WRFPTAN-DFGSEIIP------ASANEQFLKAYLFND-----YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 558
            ++ ++IL+GDH+Y+MDY   +Q H  SGAD+TI CL +    A+ FG+M +N +  + +F EKP                       +KP   +ASMG+Y+F  + LL+ LR     PT++ DFG +IIP       +   +F K+ + +D     YW D+GTI ++++AN+ LTA  P    YD + PI+T     PP
Sbjct:  126 VEYMVILAGDHVYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIFAFIEKP----------------ADPPGIPDKPDFALASMGIYVFHTKFLLDALRRDAADPTSSRDFGKDIIPYIVKNGKAVAHRFAKSCVRSDFEHEPYWRDVGTIDAYWQANIDLTAIVPELDIYDKSWPIWTYAEITPP 308          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_GRABC (Glucose-1-phosphate adenylyltransferase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=glgC PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 4.222e-24
Identity = 78/281 (27.76%), Postives = 136/281 (48.40%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---PTANDFGSEIIPASANEQFLKAYLFND-----------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP------XXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDT-MMPGADLYETDAEVASLQPEG-RVPVG--IGENTKI 789
            ++IL+GDH+Y+MDY   +  H +  AD+T+ C+ +    A+ FG+M++++ GR+ +F EKP   D   M     +             +ASMG+Y+FK + L ++LR       + +DFG +IIP         A+ F+D           YW D+GT+ S+++ANL LT   P    YD+  PI+T     PP                     G  ++ + +  S++    R+++   L  T ++P AD+  +     ++   G R+P G  +GE+ ++
Sbjct:  127 MIILAGDHIYKMDYEIMLHQHVERQADVTVGCIEVPREEATGFGVMQVDDTGRITAFLEKP--SDPPGMPGQPDIA------------LASMGIYVFKTKFLFDVLRRDAADPDSKHDFGGDIIPDLVENGTAIAHRFSDSCVRSSKTAEAYWRDVGTLDSYWQANLDLTNVVPTLDLYDSGWPIWTYNEISPPAKFVYDDVGRRGMAVDSLVAGGCIVSGASLSRSLISTGCRVHSFSQLHGTVVLPYADIARSARLRNTVVDRGVRIPEGLVVGEDPEL 393          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_CLOPS (Glucose-1-phosphate adenylyltransferase OS=Clostridium perfringens (strain SM101 / Type A) GN=glgC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.222e-24
Identity = 91/282 (32.27%), Postives = 127/282 (45.04%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL---RWRFPTANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKD-TMMPGADLYETD-AEVASLQPEGRVPVG--IGENTKIKECILDKNARIGKNVII 840
            VLILSGDH+Y+MDY   ++ H+Q  AD TI+ + +    AS FG+M  N +  +  F EKP+                       K   ASMG+Y+F  +IL   L        ++NDFG  IIP   N  + L AY FN YW+D+GTI S +EAN+ L  +    S YD+   IY++    P                   I    +E+SV+     +     +KD  +MP   + +    E A +  E  V  G  IG+  KI   I  K   IG   II
Sbjct:  122 VLILSGDHIYKMDYDKMLEMHKQKEADATIAVINVPMHEASRFGIMNTNEDLSIYEFEEKPE---------------------HPKSTNASMGIYIFNWKILKKFLEEDELDPSSSNDFGKNIIPKMLNSGKKLIAYPFNGYWKDVGTIESLWEANMDLLKYEDELSLYDSEWKIYSANPVRPAQFIGKDAEIKSSLTVEGCIVHGKVENSVLFQGVYVGKGAIVKDAVIMPNTKIEDNVLIEKAIIGSEAIVCKGCKIGDGNKI-SVIASKEVVIGSKEII 381          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_CLOPE (Glucose-1-phosphate adenylyltransferase OS=Clostridium perfringens GN=glgC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.222e-24
Identity = 90/282 (31.91%), Postives = 127/282 (45.04%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL---RWRFPTANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKD-TMMPGADLYETD-AEVASLQPEGRVPVG--IGENTKIKECILDKNARIGKNVII 840
            VLILSGDH+Y+MDY   ++ H+Q  AD TI+ + +    AS FG+M  N +  +  F EKP+                       K   ASMG+Y+F  +IL   L        ++NDFG  IIP   N  + L AY FN YW+D+GTI S +EAN+ L  +    S YD+   IY++    P                   I    +E+SV+     +     +KD  +MP   + +    E A +  E  V  G  IG+  KI   I  K   IG   +I
Sbjct:  127 VLILSGDHIYKMDYDKMLEMHKQKEADATIAVINVPMHEASRFGIMNTNEDLSIYEFEEKPE---------------------HPKSTNASMGIYIFNWKILKKFLEEDELDQSSSNDFGKNIIPKMLNSGKKLIAYPFNGYWKDVGTIESLWEANMDLLKYEDELSLYDSEWKIYSANPVRPAQFIGKDAEIKSSLTVEGCIVHGKVENSVLFQGVYVGKGAIVKDAVIMPNTKIEDNVLIEKAIIGSEAIVCKGCKIGDGNKI-SVIASKEVVIGSKEVI 386          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_BURXL (Glucose-1-phosphate adenylyltransferase OS=Burkholderia xenovorans (strain LB400) GN=glgC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.222e-24
Identity = 78/294 (26.53%), Postives = 132/294 (44.90%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---PTANDFGSEIIPASANEQFLKAYLFN-----------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXH------GSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            V++L+GDH+Y+MDY   + +H +SGAD T+ C+ +    A  FG+M ++   RV  F EKP          DT               +ASMG+Y+F  + L +LL        T +DFG +I+P    +    A+ F+            YW D+GTI +++ ANL L +  P    YD + PI+T +  LPP              +      G  I+ S I  SV+    ++++  ++ +               A L P+    V +G + ++++ ++D+   I    +I
Sbjct:  130 VVVLAGDHIYKMDYTRMIADHAESGADCTVGCIEVPRMDAVAFGVMHVDENRRVTGFVEKPADPPAIPGRPDTA--------------LASMGIYVFSADYLYSLLEENISSVDTDHDFGKDILPRVVTQGTAIAHPFSMSCVSSDPNVEPYWRDVGTIDAYWAANLDLASTIPTLDLYDRSWPIWTYQEQLPPAKFVRDMKGLQGSGNNLIVCGGCVISGSQISRSVLSSNVKVSSFCNINE---------------AVLLPQ----VTVGASCRLQKVVIDRGCAIPDGTVI 390          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBCH (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio cholerae GN=glgC1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.222e-24
Identity = 84/294 (28.57%), Postives = 127/294 (43.20%), Query Frame = 1
Query:   13 DDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR---WRFPTANDFGSEIIPASANEQFLKAYLF----------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXH-----GSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            D V I   DH+Y+MD    +  HR+  A++T+S L M   +AS FG+++++  G++  F EKP                      E +  + SMG Y+F+ E L   LR       +++DFG +IIP       +  Y F          + YW D+GTI S++ A++ L    P FS Y+ + P++T    LPP                    GS+I  S I  SV+G RS I A   + ++++ G                    V IG    IK  I+DK+  I    II
Sbjct:  116 DQVCIFGSDHIYKMDIRQMLDFHRRMEAELTVSALRMPISQASQFGVIEVDENGKMVGFEEKPSNP--------------KSIPGEPEWALVSMGNYIFEAETLSKELREDAENNQSSHDFGKDIIPKMFPRGKVYVYDFTTNKIKGEKESTYWRDVGTIESYWSAHMDLLDKDPEFSLYNRSWPLHTYYPPLPPATFVDVKDKKVKITDSLISGGSYIQGSTIYKSVLGFRSNIAAGSFISESVILG-------------------DVKIGAGCTIKRAIIDKDVEIAAGTII 376          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_RHIL3 (Glucose-1-phosphate adenylyltransferase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=glgC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.514e-24
Identity = 69/199 (34.67%), Postives = 105/199 (52.76%), Query Frame = 1
Query:   10 IDDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP--YIASMGVYLFKKEILLNLLRWRFPTAN---DFGSEIIP------ASANEQFLKAYLFND-----YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 558
            ++ ++IL+GDH+Y+MDY   +Q H  SGAD+TI CL +    A  FG+M +N++  + +F EKP                       +KP   +ASMG+Y+F  + LL+ LR      N   DFG +IIP       +   +F K+ + +D     YW D+GTI ++++AN+ LTA  P    YD + PI+T     PP
Sbjct:  126 VEYMVILAGDHVYKMDYEWMLQQHVDSGADVTIGCLEVPRMEAVGFGVMHVNDKDEIIAFVEKP----------------ADPPPIPDKPDFALASMGIYVFHTKFLLDALRRDAADPNSSRDFGKDIIPYIVKNGKAVAHRFAKSCVRSDFEHEPYWRDVGTIDAYWQANIDLTAIVPELDIYDKSWPIWTYAEITPP 308          
The following BLAST results are available for this feature:
BLAST of DY259988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
GLGC_SALA43.232e-2427.55Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC_RHIE63.232e-2434.67Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_DESRM3.232e-2430.22Glucose-1-phosphate adenylyltransferase OS=Desulfo... [more]
GLGC_RHIEC4.222e-2435.18Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_GRABC4.222e-2427.76Glucose-1-phosphate adenylyltransferase OS=Granuli... [more]
GLGC_CLOPS4.222e-2432.27Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_CLOPE4.222e-2431.91Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_BURXL4.222e-2426.53Glucose-1-phosphate adenylyltransferase OS=Burkhol... [more]
GLGC1_VIBCH4.222e-2428.57Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_RHIL35.514e-2434.67Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YN18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259988 ID=DY259988; Name=DY259988; organism=Citrus clementina; type=EST; length=1032bp
AATAAAGTAATTGATGATGTCCTGATTCTATCTGGGGATCACTTGTATAG
AATGGACTATATGGACTTTGTCCAGAATCATCGGCAGAGTGGTGCAGACA
TCACTATCTCTTGTCTGCCTATGGACGACCGTCGTGCCTCAGATTTTGGT
CTGATGAAAATTAACAACGAGGGAAGAGTCCCTTCTTTCAGTGAAAAGCC
TAAAGGGAAAGACTTGAAAGCAATGGCAGTAGATACAACAGTTTTGGGAC
TTTCTAAACAAGAGGCTGAAGAGAAGCCATACATTGCTTCCATGGGTGTG
TATCTCTTCAAAAAGGAGATACTTCTTAATCTTTTGAGATGGCGTTTTCC
AACTGCGAATGACTTTGGATCAGAAATAATCCCTGCATCAGCCAATGAAC
AATTCTTAAAGGCTTATCTGTTCAATGATTACTGGGAAGATATAGGAACC
ATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGCGCATCCACCGAT
GTTTAGTTTCTATGATGCCACAAAGCCCATCTACACGTCTCGAAGAAACC
TACCACCATCGAAGATTGATGATAGCAAGATTGTTGATTCCATCATATCA
CATGGAAGTTTCATAACAAGCAGCTTCATAGAACACAGTGTCGTTGGCAT
CAGATCTCGAATCAATGCTAACGTTCACTTAAAGGATACCATGATGCCTG
GAGCTGACCTTTACGAGACAGACGCTGAAGTAGCCTCACTACAACCTGAG
GGGAGAGTTCCCGTTGGAATTGGTGAAAACACAAAAATAAAAGAGTGCAT
CCTTGACAAAAATGCCCGAATAGGGAAAAATGTTATTATTGCCAATTTCG
AAGGGCTCCCAAAAGGCTGATAAATCCGCCAAAGGGTTTCCCCTCCCGCC
CCGGGGTTTCCCCGTCTTATTAAAAATTCCCGTTTACCCCCCACCGAATT
GGGAATATAAAAAAAATTTTCCCCTCCCCCCCCTCTTTTGCTTGAATTTG
GGGGTGCCACCCAAAAAAATCTTTTAAAGGAA
back to top