DY259988

Overview
NameDY259988
Unique NameDY259988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1032
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_NOVAD (Glucose-1-phosphate adenylyltransferase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=glgC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.514e-24
Identity = 80/288 (27.78%), Postives = 128/288 (44.44%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---PTANDFGSEIIPASANEQFLKAYLF-----------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            ++IL+GDH+Y+MDY   ++ H +SGAD+TI CL +    A+ FG+M ++    + +F EKP               G+      E   +ASMG+Y+F  + L ++LR       ++ DFG++IIP         A+ F            +YW D+GT+ ++FEANL LT   P  + YD   PI+T +    P                S I+   I    +  RS +   V +            +  E A + P       IG   ++   ILD   RI + +++
Sbjct:  129 MVILAGDHIYKMDYELMLRQHVESGADVTIGCLVVPRIEATGFGVMAVDTSDTITAFVEKPANPP-----------GI---PGNEDMALASMGIYVFDTKFLFDILREDAADPSSSRDFGNDIIPKIVRNGKAVAHRFTASCIRAAEEIEEYWRDVGTLDAYFEANLDLTDVVPKLNMYDRDWPIWTDQIIAAPAKFVHDEDGRRGMAISSLISQDCIVSGAIARRSLLFTGVKMGSF---------SSCEEAVILPY----CNIGRGARLSRVILDSGVRIPEGLVV 389          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_CLOCE (Glucose-1-phosphate adenylyltransferase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=glgC PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 5.514e-24
Identity = 80/283 (28.27%), Postives = 132/283 (46.64%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL---RWRFPTANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYE-TDAEVASLQPEGRVPVGIGENTKI--KECILDKNARIGKNVIIAN 846
            V+ILSGDH+Y+MDY   +  H+++ AD TIS + +    AS +G+M  +  G++  F EKPK                       K  +ASMGVY+F    L   L        + NDFG  IIPA   + + + AY ++ YW D+GTI++F+E+N+ L +  P F+ +D    IYT     P                    +S+ ++ S++     ++  V +   + PGA + E    + + +    RV      N  I  ++ I+ + AR+G+   + N
Sbjct:  122 VIILSGDHIYKMDYSKMLDFHKENHADATISVINVPYEEASRYGIMNCHENGKIYEFEEKPK---------------------NPKSTLASMGVYIFTWSTLREYLIKDNECSDSVNDFGKNIIPAMLGDGKSMWAYQYSGYWRDVGTIQAFWESNMDLVSRVPQFNLFDPEWRIYTPNPVKPAHY---------------IASSACVKKSIIAEGCSVHGTV-INSILFPGAYIEEGAVIQDSIIMSNSRVCKNAYINRSIISEQAIIGEKARLGEGPDVPN 367          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_SALDC (Glucose-1-phosphate adenylyltransferase OS=Salmonella dublin (strain CT_02021853) GN=glgC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.201e-24
Identity = 81/294 (27.55%), Postives = 134/294 (45.58%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR---WRFPTANDFGSEIIPASANEQFLKAYLF-----------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP------XXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            V+IL+GDH+Y+ DY   + +H + GA  T+ C+P+  + A+ FG+M ++   ++  F EKP      AM  D +              +ASMG+Y+F  + L  LL        +++DFG +IIP    E    A+ F             YW D+GT+ ++++ANL L +  P    YD   PI T   +LPP                     G  I+ S +  SV+  R RIN+  ++               + A L PE    V +G + +++ C++D+   I + ++I
Sbjct:  136 VVILAGDHIYKQDYSRMLIDHVEKGARCTVVCMPVPIKEATAFGVMAVDESDKIIDFVEKPANP--PAMPGDAS------------KSLASMGIYVFDADYLYELLAADDKDDASSHDFGKDIIPKITREGMAYAHPFPLSCVQSDPQAEPYWRDVGTLEAYWKANLDLASVTPELDMYDQNWPIRTHMESLPPAKFVQDRSGSHGMTLNSLVSGGCIISGSVVVQSVLFPRVRINSFCNI---------------DSAVLLPE----VWVGRSCRLRRCVIDRACIIPEGMVI 396          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_ROSDO (Glucose-1-phosphate adenylyltransferase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=glgC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.201e-24
Identity = 63/187 (33.69%), Postives = 98/187 (52.41%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASANEQFLKAYLFN-----------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT 537
            ++IL+GDH+Y+ DY + +++H +SGAD+T+ C+ +    AS FG+MK++ E R+  F EKP   D  AM                   +ASMG+Y+F+ E L  ++         ++DFG +IIP         A+ F+            YW D+GT+ +F++ANL LT   P    YD   PI+T
Sbjct:  128 IIILAGDHIYKQDYAEMIRHHVESGADVTVGCIEVPRMEASGFGVMKVDTEDRILDFIEKP--GDPPAM------------PGHPDQALASMGIYVFETEYLFKIMEECAAVPGYSHDFGGDIIPTIVRGGKAVAHPFSRSCVRTVNEEAPYWRDVGTVDAFWQANLDLTDFKPALDLYDTEWPIWT 300          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_RHILW (Glucose-1-phosphate adenylyltransferase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=glgC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.201e-24
Identity = 69/199 (34.67%), Postives = 104/199 (52.26%), Query Frame = 1
Query:   10 IDDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP--YIASMGVYLFKKEILLNLLRWRFPTAN---DFGSEIIP------ASANEQFLKAYLFND-----YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 558
            ++ ++IL+GDH+Y+MDY   +Q H  SGAD+TI CL +    A  FG+M +N +  + +F EKP                       +KP   +ASMG+Y+F  + LL+ LR      N   DFG +IIP       +   +F K+ + +D     YW D+GTI ++++AN+ LTA  P    YD + PI+T     PP
Sbjct:  126 VEYMVILAGDHVYKMDYEWMLQQHVDSGADVTIGCLEVPRMEAVGFGVMHVNEKDEIIAFVEKP----------------ADPPPIPDKPDFALASMGIYVFHTKFLLDALRRDAADPNSSRDFGKDIIPYIVKNGKAVAHRFAKSCVRSDFEHEPYWRDVGTIDAYWQANIDLTAIVPELDIYDKSWPIWTYAEITPP 308          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_LACCB (Glucose-1-phosphate adenylyltransferase OS=Lactobacillus casei (strain BL23) GN=glgC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.201e-24
Identity = 77/276 (27.90%), Postives = 121/276 (43.84%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPA-SANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTM-MPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKN 831
            +LILSGDH+Y+MDY   +  H+   A +T++ +P++   A  FG+M  ++  R+  F EKP                     A+ K  +ASMG+Y+F    L   L   + T     DFG ++IPA   + +   AY F  YW+D+GTI+S +EAN+         +  +    I++    LPP                    +  I+HS++    +I     +KD+M MP A                     IG+N  +   I+ +NA IG N
Sbjct:  121 LLILSGDHIYKMDYQAMLDYHKAKKASLTVAVMPVEKEEAKRFGIMNTDDTDRIIEFEEKP---------------------AKPKSNLASMGIYIFNWPTLKQYLTESYATDGAMEDFGHDVIPAYLTHNEASYAYAFRGYWKDVGTIQSLWEANMEFLNPNNPLNIGNRNWRIFSQNEALPPMFLTKTAKVAGSMIVDGCYVAGSIQHSILSQNVKIGEGSVIKDSMIMPNA--------------------VIGKNVTVDHAIVGENAIIGDN 355          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_LACC3 (Glucose-1-phosphate adenylyltransferase OS=Lactobacillus casei (strain ATCC 334) GN=glgC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.201e-24
Identity = 77/276 (27.90%), Postives = 121/276 (43.84%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPA-SANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTM-MPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKN 831
            +LILSGDH+Y+MDY   +  H+   A +T++ +P++   A  FG+M  ++  R+  F EKP                     A+ K  +ASMG+Y+F    L   L   + T     DFG ++IPA   + +   AY F  YW+D+GTI+S +EAN+         +  +    I++    LPP                    +  I+HS++    +I     +KD+M MP A                     IG+N  +   I+ +NA IG N
Sbjct:  121 LLILSGDHIYKMDYQAMLDYHKAKKASLTVAVMPVEKEEAKRFGIMNTDDTDRIIEFEEKP---------------------AKPKSNLASMGIYIFNWPTLKQYLTESYATDGAMEDFGHDVIPAYLTHNEASYAYAFRGYWKDVGTIQSLWEANMEFLNPNNPLNIGNRNWRIFSQNEALPPMFLTKTAKVAGSMIVDGCYVAGSIQHSILSQNVKIGEGSVIKDSMIMPNA--------------------VIGKNVTVDHAIVGENAIIGDN 355          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_LACS1 (Glucose-1-phosphate adenylyltransferase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=glgC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 9.405e-24
Identity = 83/281 (29.54%), Postives = 126/281 (44.84%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK----KEILLNLLRWRFPTANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP-XXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDT-MMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            +LILSGDH+Y+MDY   +  H+++GA +T++ + +    AS FG+M  ++  R+  F EKP                     AE K   ASMG+Y+F     +E+L+N    R     DFG  +IP      + + AY F  YW+D+GTI S + AN+         +  D T  IY+     PP                GS+I    ++HS++    RI     + D+ +MPGA                     IG+N  I   I+ + A IG +V+I
Sbjct:  121 ILILSGDHIYKMDYEAMLDQHKETGASLTVAVIDVPWDEASRFGIMNTDDNNRIIDFEEKP---------------------AEPKSNHASMGIYIFNWKRLREVLVNSFT-RNQDMVDFGKNVIPYYLKSGESVFAYNFKGYWKDVGTIDSLWHANMEFLDENNELNLQDRTWRIYSRNPIAPPQIIAETAEIKDAMIVDGSYIAGK-VDHSILSANVRIQTGSVVTDSVIMPGAK--------------------IGKNVTIHRAIIGEGAVIGDDVVI 358          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_KLEP3 (Glucose-1-phosphate adenylyltransferase OS=Klebsiella pneumoniae (strain 342) GN=glgC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 9.405e-24
Identity = 80/294 (27.21%), Postives = 132/294 (44.90%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR---WRFPTANDFGSEIIPASANEQFLKAYLF-----------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP------XXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            V+IL+GDH+Y+ DY   + +H + GA  T++C+P+    AS FG+M ++   ++  F EKP      AM  D T              +ASMG+Y+F    L  LL        +++DFG +IIP         A+ F             YW D+GT+ ++++ANL L +  P    YD   PI T   +LPP                     G  I+ S +  SV+  R R+N+  ++               + A L P+    V +G + +++ C++D+   I + ++I
Sbjct:  136 VVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIEEASAFGVMAVDENEKIIEFVEKPANP--PAMPTDPT------------KSLASMGIYIFDAAYLYELLEEDDRNENSSHDFGKDIIPKITEAGMAYAHPFPLSCVQSDPNAEPYWRDVGTLEAYWKANLDLASVTPELDMYDQNWPIRTHMESLPPAKFVQDRSGSHGMTLNSLVSGGCIISGSVVVQSVLFPRVRVNSFCNI---------------DSAVLLPD----VWVGRSCRLRRCVIDRACVIPEGMVI 396          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC2_VIBVY (Glucose-1-phosphate adenylyltransferase 2 OS=Vibrio vulnificus (strain YJ016) GN=glgC2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 9.405e-24
Identity = 79/286 (27.62%), Postives = 128/286 (44.76%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL---RWRFPTANDFGSEIIPASANEQFLKAYLF---------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFI------EHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARI 822
            V++LSGDH+YRMDY   ++ H  + A +T++C+ ++ + A  FG+M I+   RV SF EKP+                     + +  + SMG+Y+F  E+L   L        +++DFG +IIP   +   + AY F         + YW D+GTI SF++AN+ L    P  + Y     I T     PP                S I++  I      +HS+V    RIN +  + D+++                      V IGE  ++  CI+DK+ ++
Sbjct:  119 VMVLSGDHIYRMDYAPMLEEHIANNAALTVACMDVNCKEAKAFGVMGIDEHHRVHSFVEKPQNP--------------PHLPNDPERSLVSMGIYIFSMEVLQQALIEDADNDASSHDFGKDIIPKLIDTGSVFAYKFCGSKGRVDKDCYWRDVGTIDSFYQANMDLLEPIPPMNLYQKDWGIRTYEPQYPPARTVSSGSGNEGIFINSMISNGVINSGGSVQHSIVSSNVRINDSATIVDSIIFD-------------------DVEIGEGCQLVNCIIDKHVKV 371          
The following BLAST results are available for this feature:
BLAST of DY259988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
GLGC_NOVAD5.514e-2427.78Glucose-1-phosphate adenylyltransferase OS=Novosph... [more]
GLGC_CLOCE5.514e-2428.27Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_SALDC7.201e-2427.55Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC_ROSDO7.201e-2433.69Glucose-1-phosphate adenylyltransferase OS=Roseoba... [more]
GLGC_RHILW7.201e-2434.67Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_LACCB7.201e-2427.90Glucose-1-phosphate adenylyltransferase OS=Lactoba... [more]
GLGC_LACC37.201e-2427.90Glucose-1-phosphate adenylyltransferase OS=Lactoba... [more]
GLGC_LACS19.405e-2429.54Glucose-1-phosphate adenylyltransferase OS=Lactoba... [more]
GLGC_KLEP39.405e-2427.21Glucose-1-phosphate adenylyltransferase OS=Klebsie... [more]
GLGC2_VIBVY9.405e-2427.62Glucose-1-phosphate adenylyltransferase 2 OS=Vibri... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259988 ID=DY259988; Name=DY259988; organism=Citrus clementina; type=EST; length=1032bp
AATAAAGTAATTGATGATGTCCTGATTCTATCTGGGGATCACTTGTATAG
AATGGACTATATGGACTTTGTCCAGAATCATCGGCAGAGTGGTGCAGACA
TCACTATCTCTTGTCTGCCTATGGACGACCGTCGTGCCTCAGATTTTGGT
CTGATGAAAATTAACAACGAGGGAAGAGTCCCTTCTTTCAGTGAAAAGCC
TAAAGGGAAAGACTTGAAAGCAATGGCAGTAGATACAACAGTTTTGGGAC
TTTCTAAACAAGAGGCTGAAGAGAAGCCATACATTGCTTCCATGGGTGTG
TATCTCTTCAAAAAGGAGATACTTCTTAATCTTTTGAGATGGCGTTTTCC
AACTGCGAATGACTTTGGATCAGAAATAATCCCTGCATCAGCCAATGAAC
AATTCTTAAAGGCTTATCTGTTCAATGATTACTGGGAAGATATAGGAACC
ATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGCGCATCCACCGAT
GTTTAGTTTCTATGATGCCACAAAGCCCATCTACACGTCTCGAAGAAACC
TACCACCATCGAAGATTGATGATAGCAAGATTGTTGATTCCATCATATCA
CATGGAAGTTTCATAACAAGCAGCTTCATAGAACACAGTGTCGTTGGCAT
CAGATCTCGAATCAATGCTAACGTTCACTTAAAGGATACCATGATGCCTG
GAGCTGACCTTTACGAGACAGACGCTGAAGTAGCCTCACTACAACCTGAG
GGGAGAGTTCCCGTTGGAATTGGTGAAAACACAAAAATAAAAGAGTGCAT
CCTTGACAAAAATGCCCGAATAGGGAAAAATGTTATTATTGCCAATTTCG
AAGGGCTCCCAAAAGGCTGATAAATCCGCCAAAGGGTTTCCCCTCCCGCC
CCGGGGTTTCCCCGTCTTATTAAAAATTCCCGTTTACCCCCCACCGAATT
GGGAATATAAAAAAAATTTTCCCCTCCCCCCCCTCTTTTGCTTGAATTTG
GGGGTGCCACCCAAAAAAATCTTTTAAAGGAA
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