DY259988

Overview
NameDY259988
Unique NameDY259988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1032
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_CORA7 (Glucose-1-phosphate adenylyltransferase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=glgC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.905e-18
Identity = 74/293 (25.26%), Postives = 126/293 (43.00%), Query Frame = 1
Query:   13 DDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL---RWRFPTANDFGSEIIPASANEQFLKAYLF------------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIY-TSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVP-VGIGENTKIKECILDKNARIGKNVII 840
            D V++   DH+YRMD    V+ H  +G D +++ + +    AS FG ++ +  G +  F EKP+         + T               ASMG Y+F  + L++ L        +A+D G  IIP     +    Y F            + YW D+GTI SF+EA++ + +  P+F+ Y+ + PI+ T   N PP                 F+ +   + S+V     ++        +   +D++  D   A+++    +P V IG    ++  ILDKN  +    II
Sbjct:  119 DYVIVFGADHVYRMDPAQMVEEHIATGLDCSVAGIRVPRSEASAFGCIQADGMGTITEFVEKPENPPATPDDPNMT--------------YASMGNYVFTTQALIDALLEDEKNEDSAHDMGGNIIPYFVEREQAHVYDFMANEVPGSTERDHGYWRDVGTIDSFYEAHMDMISVHPIFNLYNRSWPIHSTDDSNFPP---------------AKFVQNGIAQSSMVAPGCIVSGGTVRNSVL--ASDVHVADG--ATVEGSVILPGVRIGRGAVVRHAILDKNVVVSDGAII 378          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_ACIAC (Glucose-1-phosphate adenylyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=glgC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.905e-18
Identity = 74/281 (26.33%), Postives = 120/281 (42.70%), Query Frame = 1
Query:   13 DDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-NDFGSEIIPASANEQFLKAYLF-------------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKN 813
            D V +   DH+YRMD    +  H ++ A ++++ LP+     + FG+++ ++  R+  F EKP+          T  L             ASMG YLF  +ILL+ LR    T  +DFG  I+PA      L AY F             + YW D+GTI ++++A+       P F   +   PIY S                      + I +  I  SVVG  S ++    L + M+  + + E DA +       R  +G G   +++  I+D++
Sbjct:  120 DIVAVFGADHIYRMDVRQMIDFHVKNDAHVSVATLPVKLADCNQFGIVETDDNHRIVDFVEKPQTPPRPMPGSSTHAL-------------ASMGNYLFNADILLDALREAHETGHSDFGKHILPAMLKSHRLMAYDFDTNTIPGTEPYEEHGYWRDVGTIDAYYQAHFDTLGATPRFRMTNRHWPIYAS----------------PDQAESAQIENGVIHRSVVGSGSIVD-GASLDNAMLRRSVVVERDARLEHCIVMERSRIGRG--AQVRRAIIDQD 368          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_ACIC1 (Glucose-1-phosphate adenylyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glgC PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.712e-18
Identity = 78/298 (26.17%), Postives = 122/298 (40.94%), Query Frame = 1
Query:   13 DDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEG-----RVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASANEQFLKAYLFND------------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVIIAN 846
            D +L+   DH+YRMD    ++ H  SGA +T++ + +  + A  FG+++    G     RV  F EKP          DT  LGL     E     ASMG Y F    LL+ +        +A+D G  IIP          Y F+             YW D+GT+ ++++A+  L +  P+F+ Y+   PIYT  R LPP               G+ +  S +   V+   +R++ +V                     L P     V +     I+ C+L  N  IG+  ++ N
Sbjct:  119 DYILVFGADHIYRMDPRQMLEEHIASGASVTVAAVRVPRKDAHAFGVIQPAASGPERGRRVARFLEKP---------ADTEGLGLPDAPDE---VFASMGNYCFTTAALLDAVIRDAADERSAHDMGGNIIPMFVERGDAAVYDFHTNQVPGSTPRDHAYWRDVGTLDAYYDAHQDLVSVHPIFNLYNQDWPIYTHHRPLPP---------AKIVHDGTSVVDSLLSDGVIVADARVSRSV---------------------LSPS----VYVDRGAVIEGCVLLDNVHIGRGAVVRN 370          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_AZOSE (Glucose-1-phosphate adenylyltransferase OS=Azoarcus sp. (strain EbN1) GN=glgC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.007e-17
Identity = 54/190 (28.42%), Postives = 88/190 (46.32%), Query Frame = 1
Query:   13 DDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-ANDFGSEIIPASANEQFLKAYLFND-------------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTS 540
            D V++   DH+YRMD    ++ H  + AD T++ LP+     S FG+++ ++ GR+  F EKP+  +                       +ASMG Y+F  ++L++ LR       +DFG  ++PA A    + AY F               YW D+GTI ++++AN       P F   +   PIY +
Sbjct:  120 DLVVVFGADHVYRMDLRQMIEFHIATQADATVAALPVPLEHTSSFGIIRTDSAGRIRDFREKPESAE--------------PMPGRPGHALASMGNYVFSADLLVDALRRAHSRGGHDFGKNLLPAMAERNRVMAYDFTTNRMRGIRDYEEPAYWRDVGTIDAYYDANFDTLGEFPKFCMSNPHWPIYAN 295          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_THECA (Glucose-1-phosphate adenylyltransferase OS=Thermus caldophilus GN=glgC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.718e-17
Identity = 74/296 (25.00%), Postives = 127/296 (42.91%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPY-------IASMGVYLFKKEILLNLLRWRF---PTANDFGSEIIPASANEQF-LKAYLF-----------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP------XXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARI 822
            V +  GDH+++M+    V+ H  + ADITI+  P+    A+ FG+++++ E R+  F EKP+                     E KP        +ASMG Y+F+ E L  LL        +A+DFG  +IP +    + + AY F           N YW D+GT+ +++EA++ L    P+F       P+ T+    PP                     G  ++   +  SV+  R R+N+      +++  + L++               V +G   +I+  I+DKN +I
Sbjct:  125 VAVFGGDHIFKMNIRHMVEYHYDTRADITIAAYPVPVAEATRFGVLQVDEEWRITEFQEKPE---------------------EPKPIPGRPDMALASMGNYIFRTEALFELLEADARDETSAHDFGKGVIPRAIRVGYRVYAYDFHRNPIPGQEGPNLYWRDVGTLDAYYEASMDLVKVDPVFGLCSPVWPLRTANLFSPPAKFVHETGERVGRALNSLLAGGVIVSGGTVRESVLFRRVRVNSY-----SLVERSVLFD--------------DVEVGRYCRIRNAIIDKNVKI 380          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_PROAC (Glucose-1-phosphate adenylyltransferase OS=Propionibacterium acnes GN=glgC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.244e-17
Identity = 73/283 (25.80%), Postives = 120/283 (42.40%), Query Frame = 1
Query:   13 DDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA---NDFGSEIIPASANEQFLKAYLFN------------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLP-PXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKN 813
            D V++   D++YRMD    +Q H  SG   T++ + +  + AS FG++  +   ++  F EKP          D   L  +  E+      ASMG Y+F +E L+  L     +A   +D G ++IP   N    + Y F             DYW D+GTI ++ +A++ L +  P F+ Y+   PI+T +   P                 G  I+ + I  +V+G R+RI     + ++++                      V IG N  +   ILDKN
Sbjct:  120 DYVVVFGADNIYRMDVDAMLQYHIDSGLGCTVAGIRVPRKDASAFGIIDADQNHKITEFLEKP---------ADPPGLPDASDES-----FASMGNYIFSREALVQALHDDAHSADSRHDMGGDVIPRFVNAADAQVYDFRDNEVPGNTEKDADYWRDVGTIDAYHDAHMDLVSVEPEFNLYNPDWPIWTMQEQAPGAKFVMRGSCDDTLVSAGCIISGTDIYRTVLGPRARIERWARVDESIVMN-------------------NVAIGSNATVHRAILDKN 369          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_BACCL (Glucose-1-phosphate adenylyltransferase (Fragment) OS=Bacillus caldolyticus GN=glgC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.244e-17
Identity = 54/153 (35.29%), Postives = 78/153 (50.98%), Query Frame = 1
Query:   13 DDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRS 459
            D VL+LSGDH+Y+MDY   +  H    AD TIS + +    AS FG+M  N    +  F+EKP                     A  K  +ASMG+Y+F   +L   L+       +++DFG ++IP    E + L AY F  YW+D+GT++S
Sbjct:  119 DYVLVLSGDHIYKMDYQQMLDYHIAKQADATISVIEVPWEEASRFGIMNTNENMEIVEFAEKP---------------------ANPKSNLASMGIYIFNWPLLREYLQIDNADPHSSHDFGKDVIPRLLRENKRLVAYPFKGYWKDVGTVKS 250          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_STRAW (Glucose-1-phosphate adenylyltransferase OS=Streptomyces avermitilis GN=glgC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.100e-15
Identity = 69/284 (24.30%), Postives = 121/284 (42.61%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGR-VPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASANEQFLKAYLFN------------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARI 822
            + +   DH+YRMD    +  H +SGA +T++ + +    +S FG++   ++G+ V +F EKP               GL     + +   ASMG Y+F  ++L+  L+       + +D G  I+PA  +    + Y F+             YW D+GT+ ++++A++ L A  P F+ ++ + PIYT    L P                 F        S++     I   V  +  + PG  + +  A V        V VG G    ++  +LDKN  +
Sbjct:  122 IAVFGADHVYRMDPRQMLGEHIESGAGVTVAGIRVPRAESSSFGVIAPGSDGQTVENFLEKPADPP-----------GLP---GDPECVFASMGNYVFTTKVLIEALQRDAEDGDSVHDMGGSILPALTDRGEARLYDFSANHVPGETTRDQGYWRDVGTLDAYYDAHMDLIAERPAFNLFNRSWPIYTHSGQLSP---------------ARFNAGGIASESIISAGCLIRGQV-TRSVLSPGV-VVDPGAVVQGSVLHDNVHVGRG--AVVRGAVLDKNVEV 372          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_STRCO (Glucose-1-phosphate adenylyltransferase OS=Streptomyces coelicolor GN=glgC PE=3 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 3.961e-14
Identity = 67/284 (23.59%), Postives = 115/284 (40.49%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGR-VPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASANEQFLKAYLFN------------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARI 822
            V +   DH+YRMD    +  H +SGA +T++ + +    +  FG++   ++G+ V  F EKP   D   +A D   +             ASMG Y+F  + L+  L        + +D G  I+P   +      Y F+             YW D+GT+ ++++A++ L A  P F+ Y+   P+YT    L P                 F        S++     I   V  +  + PG  +        S+  +    V IG    ++  +LDKN ++
Sbjct:  115 VAVFGADHVYRMDPRQMLAQHIESGAGVTVAGIRVPRAESPSFGVITPGSDGQTVTGFLEKPA--DPPGLADDPGCV------------FASMGNYVFTTKALVEALHRDAEDPDSVHDMGGSILPQLTDRGEAALYDFSANHVPGETTRDQGYWRDVGTLDAYYDAHMDLIAERPAFNLYNRDWPVYTHSTQLSP---------------ARFNAGGIASESIISAGCLIRGQV-TRSVLSPGVVVDPGAVVQGSVLHDN---VHIGRGAVVRGAVLDKNVQV 365          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGS_MAIZE (Glucose-1-phosphate adenylyltransferase small subunit (Fragment) OS=Zea mays GN=GLG1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.505e-13
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  604 GSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLY-ETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVIIANFEGL 858
            G  I +  I HSVVG+RS I+    ++DT++ GAD Y ET+A+   L   G +P+GIG+N+ I++ I+DKNARIG NV I N + +
Sbjct:    9 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYAETEADKKLLAENGGIPIGIGKNSHIRKAIIDKNARIGDNVKILNADNV 94          
The following BLAST results are available for this feature:
BLAST of DY259988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
GLGC_CORA75.905e-1825.26Glucose-1-phosphate adenylyltransferase OS=Coryneb... [more]
GLGC_ACIAC5.905e-1826.33Glucose-1-phosphate adenylyltransferase OS=Acidovo... [more]
GLGC_ACIC17.712e-1826.17Glucose-1-phosphate adenylyltransferase OS=Acidoth... [more]
GLGC_AZOSE1.007e-1728.42Glucose-1-phosphate adenylyltransferase OS=Azoarcu... [more]
GLGC_THECA1.718e-1725.00Glucose-1-phosphate adenylyltransferase OS=Thermus... [more]
GLGC_PROAC2.244e-1725.80Glucose-1-phosphate adenylyltransferase OS=Propion... [more]
GLGC_BACCL2.244e-1735.29Glucose-1-phosphate adenylyltransferase (Fragment)... [more]
GLGC_STRAW2.100e-1524.30Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRCO3.961e-1423.59Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGS_MAIZE1.505e-1346.51Glucose-1-phosphate adenylyltransferase small subu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259988 ID=DY259988; Name=DY259988; organism=Citrus clementina; type=EST; length=1032bp
AATAAAGTAATTGATGATGTCCTGATTCTATCTGGGGATCACTTGTATAG
AATGGACTATATGGACTTTGTCCAGAATCATCGGCAGAGTGGTGCAGACA
TCACTATCTCTTGTCTGCCTATGGACGACCGTCGTGCCTCAGATTTTGGT
CTGATGAAAATTAACAACGAGGGAAGAGTCCCTTCTTTCAGTGAAAAGCC
TAAAGGGAAAGACTTGAAAGCAATGGCAGTAGATACAACAGTTTTGGGAC
TTTCTAAACAAGAGGCTGAAGAGAAGCCATACATTGCTTCCATGGGTGTG
TATCTCTTCAAAAAGGAGATACTTCTTAATCTTTTGAGATGGCGTTTTCC
AACTGCGAATGACTTTGGATCAGAAATAATCCCTGCATCAGCCAATGAAC
AATTCTTAAAGGCTTATCTGTTCAATGATTACTGGGAAGATATAGGAACC
ATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGCGCATCCACCGAT
GTTTAGTTTCTATGATGCCACAAAGCCCATCTACACGTCTCGAAGAAACC
TACCACCATCGAAGATTGATGATAGCAAGATTGTTGATTCCATCATATCA
CATGGAAGTTTCATAACAAGCAGCTTCATAGAACACAGTGTCGTTGGCAT
CAGATCTCGAATCAATGCTAACGTTCACTTAAAGGATACCATGATGCCTG
GAGCTGACCTTTACGAGACAGACGCTGAAGTAGCCTCACTACAACCTGAG
GGGAGAGTTCCCGTTGGAATTGGTGAAAACACAAAAATAAAAGAGTGCAT
CCTTGACAAAAATGCCCGAATAGGGAAAAATGTTATTATTGCCAATTTCG
AAGGGCTCCCAAAAGGCTGATAAATCCGCCAAAGGGTTTCCCCTCCCGCC
CCGGGGTTTCCCCGTCTTATTAAAAATTCCCGTTTACCCCCCACCGAATT
GGGAATATAAAAAAAATTTTCCCCTCCCCCCCCTCTTTTGCTTGAATTTG
GGGGTGCCACCCAAAAAAATCTTTTAAAGGAA
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