DY259988

Overview
NameDY259988
Unique NameDY259988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1032
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_FRATM (Glucose-1-phosphate adenylyltransferase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=glgC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.220e-28
Identity = 86/289 (29.76%), Postives = 144/289 (49.83%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR---WRFPTANDFGSEIIPASANEQFLKAYLFN-----------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHL-KDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            V++L+GDH+Y+MDY   +++H QSG   T+ C+ +    A  FG+M I+   ++ SF EKPK           T+ G + +        ASMG+Y+F  + L +LL        +++DFG +IIP   +E    A+ F+            YW D+GTI +F+EANL L A+ P  + YD   P++T++  LPP              HG  IT++      + + S I+ ++   K  ++ G  +     +   + PE    V +GEN ++K+ ++DK   I   ++I
Sbjct:  130 VIVLAGDHIYKMDYSIMLRDHAQSGYKCTVGCVEIAKGEAYAFGIMGIDENRKITSFIEKPKKN-------APTIPGTTDR------CYASMGIYIFNSDYLYDLLEEDITNKESSHDFGKDIIPRVVSENQALAHPFSMSCVPRGEGIEPYWRDVGTIDAFWEANLDLAANMPELNIYDKDWPVWTAQEQLPP----AKFVPDRNGNHG-VITNTLASGGCIVLGSEISKSLMFSKVRVLAGCKI-----DQCVIMPE----VVVGENCRLKKVVIDKGCDIPAGMVI 391          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC1_PSEA6 (Glucose-1-phosphate adenylyltransferase 1 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=glgC1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.074e-27
Identity = 73/191 (38.22%), Postives = 108/191 (56.54%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASD-FGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR---WRFPTANDFGSEIIPASANEQFLKAYLFND-------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 558
            VL+L+GDH+Y+MDY D +  H QSGAD+TI  + +    A++ FG+M+IN  GRV SF EKP   D  +   +   L L           ASMG+Y+F  E LLN L+       + +DFG++I+P    +  + A+ F D       YW+DIGT+ +F++AN+ L    P    YD + PI+T ++  PP
Sbjct:  131 VLVLAGDHIYKMDYADMLAQHVQSGADVTIGGIEVPVHEAANAFGVMQINKSGRVVSFDEKP---DSPSPLPEDPALAL-----------ASMGIYVFNTEFLLNELQKDAHSLTSEHDFGNDIVPQCIADYEVHAFRFTDSLYGLKPYWKDIGTLDAFWQANIDLIEVTPKLDIYDDSWPIWTYQKQSPP 307          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_SACD2 (Glucose-1-phosphate adenylyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=glgC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.402e-27
Identity = 87/289 (30.10%), Postives = 138/289 (47.75%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP--YIASMGVYLFKKEILLNLLRWRF---PTANDFGSEIIPASANEQFLKAYLFND-------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVIIAN 846
            +L+LSGDH+Y+MDY   + +H ++GAD+T+SC+ +  +  A  FG+M ++++ R+  F EKP+                   E   KP   +ASMG Y+F  E L + LR       + +DFG  IIP    E+ + AY F D       YW D+GT+ SF+EAN+ L +  P  + Y+   PI+T +  LPP                S ++   I        S + ++VH+             + E + L PE    V +  + KIK+ I+D    I + +II +
Sbjct:  131 ILVLSGDHVYQMDYGAIIAHHVETGADLTVSCIEVPIEEAAGSFGVMTVDDDNRIIRFDEKPQ----------------RPTELANKPGYTLASMGNYVFNTEFLFDQLRKDAADPDSEHDFGKNIIPNIIAEKLVSAYRFRDHDTNETAYWRDVGTLDSFWEANMELVSPNPSLNLYNHDWPIWTYQTQLPPAKFVFDDDSRRGYAVDSMVSGGCIVSGGKVKSSLLFSDVHIHS---------YAEIEESVLLPE----VEVHRSAKIKKAIIDSACVIPEGMIIGH 390          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_EUBE2 (Glucose-1-phosphate adenylyltransferase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=glgC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.402e-27
Identity = 82/274 (29.93%), Postives = 135/274 (49.27%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLN-LLRWRFPTANDFGSEIIP-ASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNV 834
            VLILSGDH+Y+MDY   +  H+ + ADITI+ +P+    AS FG++  +N+ ++  F EKP+                       K  +ASMG+Y+F  ++L + L++ +     DFG  +IP    N + + AY +N YW+D+GT+ S++EAN+ L    P+F+ Y+    IYT    +PP                     ++IE S++G  + +   V     +  G  + E      S+         IG+NT I + I+ ++  IG+NV
Sbjct:  122 VLILSGDHIYKMDYKIMLDYHKANNADITIAAMPVPMEEASRFGVVVTDNDNKITEFEEKPE---------------------HPKSNLASMGIYIFSWKVLKDALIKLKDQQECDFGKHVIPYCFNNNKRIFAYEYNGYWKDVGTLSSYWEANMELIDIIPIFNLYEEFWKIYTKTDTIPPQY---------------IAKDAYIEKSIIGDGTEVYGRV-FNSVIGSGVVIEEGCVIRDSIIMNNS---HIGKNTTITKSIIAEDVTIGENV 355          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_SHESR (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain MR-7) GN=glgC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.392e-27
Identity = 71/191 (37.17%), Postives = 104/191 (54.45%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASD-FGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN---DFGSEIIPASANEQFLKAYLFND-------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 558
            V++LSGDH+YRMDY   +  H +SGAD+T+SCL +    A+  FG+M++++E R+  F EKPK                       +  +ASMG Y+F  E L + L+     AN   DFG +IIP+   +  + AY F         YW D+GT+ SF++AN+ L +  P  + YDA  PI+T +  LPP
Sbjct:  129 VMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPVAEAAGAFGVMEVDDEMRILGFEEKPKHP--------------KHSPGNPEKCLASMGNYVFNTEFLFDQLKKDAQNANSDRDFGKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTYQEQLPP 305          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_SHESM (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain MR-4) GN=glgC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.392e-27
Identity = 71/191 (37.17%), Postives = 104/191 (54.45%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASD-FGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN---DFGSEIIPASANEQFLKAYLFND-------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 558
            V++LSGDH+YRMDY   +  H +SGAD+T+SCL +    A+  FG+M++++E R+  F EKPK                       +  +ASMG Y+F  E L + L+     AN   DFG +IIP+   +  + AY F         YW D+GT+ SF++AN+ L +  P  + YDA  PI+T +  LPP
Sbjct:  129 VMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPVAEAAGAFGVMEVDDEMRILGFEEKPKHP--------------KHSPGNPEKCLASMGNYVFNTEFLFDQLKKDAQNANSDRDFGKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTYQEQLPP 305          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_SHESA (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain ANA-3) GN=glgC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.124e-27
Identity = 71/191 (37.17%), Postives = 103/191 (53.93%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASD-FGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN---DFGSEIIPASANEQFLKAYLFND-------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 558
            V++LSGDH+YRMDY   +  H +SGAD+T+SCL +    A+  FG+M++++E R+  F EKPK                       +  +ASMG Y+F  E L   L+     AN   DFG +IIP+   +  + AY F         YW D+GT+ SF++AN+ L +  P  + YDA  PI+T +  LPP
Sbjct:  129 VMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPVAEAAGAFGVMEVDDEMRILGFEEKPKHP--------------KHSPGNPEKCLASMGNYVFNTEFLFEQLKKDAQNANSDRDFGKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTYQEQLPP 305          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_BACHD (Glucose-1-phosphate adenylyltransferase OS=Bacillus halodurans GN=glgC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.124e-27
Identity = 88/278 (31.65%), Postives = 130/278 (46.76%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN---DFGSEIIPAS-ANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            VLILSGDH+Y+MDY   + +H++ GAD TIS + +    AS FG+M  N E  +  F EKP           TT +            +ASMG+Y+F   +L + L      AN   DFG +IIP   A +  L AY F  YW+D+GTI+S++EAN+ L          D +  IY+  RN PP                   T +++  S+V     ++ NV  +  + PG                    V IG N+ + E +L  N ++G+NV++
Sbjct:  121 VLILSGDHIYKMDYDRMISHHKKLGADATISVIEVPWEEASRFGIMNTNEEMTITQFEEKP-----------TTPIS----------NLASMGIYIFNWSVLKSYLIQDAKQANSSHDFGKDIIPKMLAKDLKLVAYPFEGYWKDVGTIKSYWEANMDLLDEHSSLMLNDPSWRIYSVNRNQPPQY---------------ISTRAYVRCSLVNEGCVVHGNVE-QSILFPG--------------------VHIGANSSVFESVLMPNVKVGENVVL 341          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_TERTT (Glucose-1-phosphate adenylyltransferase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=glgC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.080e-27
Identity = 86/289 (29.76%), Postives = 134/289 (46.37%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP--YIASMGVYLFKKEILLNLLR---WRFPTANDFGSEIIPASANEQFLKAYLFND-------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVIIAN 846
            V++LSGDH+Y+MDY   +  H ++GAD+T+SC+ +  +  A  FG+M +++  R+  F EKPK                   E  + P   +ASMG Y+F  E L   LR       + +DFG  IIPA      ++AY F D       YW D+GT+ SF+ AN+ L    P  + Y+   PI+T + +LPP                S ++   I       +S + ++VH+            TD E + + P     V I  + KIK  I+D    I + ++I +
Sbjct:  131 VMVLSGDHVYQMDYGSMLAYHVETGADLTVSCIEVPIEEAAGAFGVMTVDDNNRILRFDEKPK----------------HPTELNDMPGMTLASMGNYIFNTEFLFEQLRADAENPESEHDFGKNIIPAIIKNSNVRAYRFRDHETDRASYWRDVGTLDSFWLANMELVEPSPQLNLYNQDWPIWTYQTHLPPAKFVFDDDDRRGYAVDSMVSGGCIVSGGKVSKSLLFSDVHVHS---------YTDLEESVVLPN----VQIHRHAKIKRAIIDSGCEIPEGMVIGH 390          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_PECCP (Glucose-1-phosphate adenylyltransferase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=glgC PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.959e-27
Identity = 81/294 (27.55%), Postives = 140/294 (47.62%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL--RWRFPTAN-DFGSEIIPASANEQFLKAYLF-----------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP------XXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            V+IL+GDH+Y+MDY   + +H + GA+ T++CLP+    AS FG+M ++ + R+  F+EKP   D      D   + L           ASMG+Y+F  + L  LL      P +N DFG ++IP   +++   A+ F           N YW D+GT+ +++ ANL L +  P    YD   PI ++  +LPP                     G  ++ S + HSV+  R R+N+   +  T+               + P+    V +G + +++ C++D+   + + ++I
Sbjct:  136 VVILAGDHIYKMDYSRMLIDHVEKGAECTVACLPVPLEEASAFGVMSVDKQHRILDFAEKP---DNPTPMPDNPDMAL-----------ASMGIYVFNADYLYQLLDADHNTPDSNHDFGQDLIPKIVSQRLAWAHPFTLSCVTSGEDENQYWRDVGTLEAYWRANLDLASVTPELDVYDRHWPIRSAIESLPPAKFVQDRSGSHGMTMNSLVSGGCIVSGSVVTHSVLFPRVRVNSFCSIDSTV---------------ILPD----VNVGRSCRLRRCVIDRACNLPEGMVI 396          
The following BLAST results are available for this feature:
BLAST of DY259988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
GLGC_FRATM8.220e-2829.76Glucose-1-phosphate adenylyltransferase OS=Francis... [more]
GLGC1_PSEA61.074e-2738.22Glucose-1-phosphate adenylyltransferase 1 OS=Pseud... [more]
GLGC_SACD21.402e-2730.10Glucose-1-phosphate adenylyltransferase OS=Sacchar... [more]
GLGC_EUBE21.402e-2729.93Glucose-1-phosphate adenylyltransferase OS=Eubacte... [more]
GLGC_SHESR2.392e-2737.17Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHESM2.392e-2737.17Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHESA3.124e-2737.17Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_BACHD3.124e-2731.65Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
GLGC_TERTT4.080e-2729.76Glucose-1-phosphate adenylyltransferase OS=Teredin... [more]
GLGC_PECCP6.959e-2727.55Glucose-1-phosphate adenylyltransferase OS=Pectoba... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259988 ID=DY259988; Name=DY259988; organism=Citrus clementina; type=EST; length=1032bp
AATAAAGTAATTGATGATGTCCTGATTCTATCTGGGGATCACTTGTATAG
AATGGACTATATGGACTTTGTCCAGAATCATCGGCAGAGTGGTGCAGACA
TCACTATCTCTTGTCTGCCTATGGACGACCGTCGTGCCTCAGATTTTGGT
CTGATGAAAATTAACAACGAGGGAAGAGTCCCTTCTTTCAGTGAAAAGCC
TAAAGGGAAAGACTTGAAAGCAATGGCAGTAGATACAACAGTTTTGGGAC
TTTCTAAACAAGAGGCTGAAGAGAAGCCATACATTGCTTCCATGGGTGTG
TATCTCTTCAAAAAGGAGATACTTCTTAATCTTTTGAGATGGCGTTTTCC
AACTGCGAATGACTTTGGATCAGAAATAATCCCTGCATCAGCCAATGAAC
AATTCTTAAAGGCTTATCTGTTCAATGATTACTGGGAAGATATAGGAACC
ATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGCGCATCCACCGAT
GTTTAGTTTCTATGATGCCACAAAGCCCATCTACACGTCTCGAAGAAACC
TACCACCATCGAAGATTGATGATAGCAAGATTGTTGATTCCATCATATCA
CATGGAAGTTTCATAACAAGCAGCTTCATAGAACACAGTGTCGTTGGCAT
CAGATCTCGAATCAATGCTAACGTTCACTTAAAGGATACCATGATGCCTG
GAGCTGACCTTTACGAGACAGACGCTGAAGTAGCCTCACTACAACCTGAG
GGGAGAGTTCCCGTTGGAATTGGTGAAAACACAAAAATAAAAGAGTGCAT
CCTTGACAAAAATGCCCGAATAGGGAAAAATGTTATTATTGCCAATTTCG
AAGGGCTCCCAAAAGGCTGATAAATCCGCCAAAGGGTTTCCCCTCCCGCC
CCGGGGTTTCCCCGTCTTATTAAAAATTCCCGTTTACCCCCCACCGAATT
GGGAATATAAAAAAAATTTTCCCCTCCCCCCCCTCTTTTGCTTGAATTTG
GGGGTGCCACCCAAAAAAATCTTTTAAAGGAA
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