DY259988

Overview
NameDY259988
Unique NameDY259988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1032
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_SHEFN (Glucose-1-phosphate adenylyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=glgC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.454e-26
Identity = 72/191 (37.70%), Postives = 104/191 (54.45%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW---RFPTANDFGSEIIPASANEQFLKAYLFND-------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 558
            V+ILSGDH+YRMDY   +  H +SGA++T+ CL    D  A  FG+M++++E RV  F EKP   + K++  D T+             +ASMG Y+F  + L   L+       +  DFG +IIPA      + A+ F+        YW D+GT+ SFF+AN+ L    P  + YDA  PI+T +  LPP
Sbjct:  129 VMILSGDHIYRMDYAGLLAAHAESGAEMTVCCLETPIDEAAGAFGVMEVDSEHRVIGFEEKPA--EPKSIPSDPTMC------------LASMGNYVFNTKFLFEQLKKDANNEKSDRDFGKDIIPAIIENHKVFAFPFSSAVAGQPSYWRDVGTLDSFFQANMELLLPTPPLNLYDAKWPIWTYQEQLPP 305          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB9 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS195) GN=glgC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.454e-26
Identity = 70/191 (36.65%), Postives = 101/191 (52.88%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR---WRFPTANDFGSEIIPASANEQFLKAYLFND-------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 558
            V++LSGDH+YRMDY   +  H +SGAD+T+SCL +     A  FG+M+++ E R+  F EKP              L         +  +ASMG Y+F  E L + L+       +  DFG +IIPA   +  + AY F         YW D+GT+ SF++AN+ L +  P  + YDA  PI+T +  LPP
Sbjct:  129 VMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPIAEAAGSFGVMEVDEEMRILGFEEKP--------------LQPKHSPGNPEMCLASMGNYVFNTEFLFDQLKKDALNESSDRDFGKDIIPAIIEKHNVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTFQEQLPP 305          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_NITMU (Glucose-1-phosphate adenylyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=glgC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.454e-26
Identity = 82/283 (28.98%), Postives = 129/283 (45.58%), Query Frame = 1
Query:   13 DDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN---DFGSEIIPASANEQFLKAYLFND----------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARI 822
            D VLIL GDH+Y+MDY   + +H    A++TI+C+ +    AS FG+M +  +GRV  F+EKP        +V T V G           + SMG+Y+F  + L + L       N   DFG ++IP       +  + F+D          YW D+GT+ +++EANL L    P  + YD   PI+T +  LPP                S ++   I       RS + +NV ++   +          E + + P     V +G N +++  ++DKN  I
Sbjct:  130 DYVLILGGDHVYKMDYAKLLADHIAKSAEMTIACIDLPLEEASAFGVMSVTKDGRVTDFTEKP--------SVPTAVPGRPGYA------LVSMGIYVFNADFLFDQLIRDHDDPNSSHDFGKDLIPHLVPRSRVFTHRFSDSCVNMVSGVPYWRDVGTVEAYWEANLDLVQVTPDLNLYDQDWPIWTHQEQLPPAKFVFDNDDRRGQALDSMVSGGCIISGATVRRSLLFSNVQVRSYSV---------LEDSVILPN----VDVGRNARLRRVVVDKNCII 385          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_GEOTN (Glucose-1-phosphate adenylyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=glgC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.454e-26
Identity = 81/256 (31.64%), Postives = 123/256 (48.05%), Query Frame = 1
Query:   13 DDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL---LNLLRWRFPTANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDT-MMPGADLYE-TDAEVASLQPEGRVP 762
            D VL+LSGDH+Y+MDY   +  H    AD+TIS + +    AS FG+M  N E  +  F+EKP                     AE K  +ASMG+Y+F   +L   L +      +++DFG ++IP    E + L AY F  YW+D+GT++S +EAN+ L         +D +  IY+   N PP              +   +    +E SV+    RI     +K++ +MPGA + E    E A + P+  +P
Sbjct:  119 DYVLVLSGDHIYKMDYQHMLDYHIAKQADVTISVIEVPWEEASRFGIMNTNEEMEIVEFAEKP---------------------AEPKSNLASMGIYIFNWPLLKQYLQIDNANPHSSHDFGKDVIPMLLREKKRLFAYPFEGYWKDVGTVKSLWEANMDLLDENNELDLFDRSWRIYSVNPNQPPQYISPEAEVSDSLVNEGCVVEGTVERSVLFQGVRIGKGAVVKESVIMPGAAVSEGAYVERAIVTPDSVIP 353          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB8 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS185) GN=glgC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.511e-26
Identity = 69/191 (36.13%), Postives = 101/191 (52.88%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR---WRFPTANDFGSEIIPASANEQFLKAYLFND-------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 558
            V++LSGDH+YRMDY   +  H +SGAD+T+SCL +     A  FG+M+++ E R+  F EKP+                       +  +ASMG Y+F  E L + L+       +  DFG +IIPA   +  + AY F         YW D+GT+ SF++AN+ L +  P  + YDA  PI+T +  LPP
Sbjct:  129 VMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPIAEAAGSFGVMEVDEEMRILGFEEKPQQP--------------KHSPGNPEMCLASMGNYVFNTEFLFDQLKKDALNESSDRDFGKDIIPAIIEKHNVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTFQEQLPP 305          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB2 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS223) GN=glgC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.511e-26
Identity = 69/191 (36.13%), Postives = 101/191 (52.88%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR---WRFPTANDFGSEIIPASANEQFLKAYLFND-------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 558
            V++LSGDH+YRMDY   +  H +SGAD+T+SCL +     A  FG+M+++ E R+  F EKP+                       +  +ASMG Y+F  E L + L+       +  DFG +IIPA   +  + AY F         YW D+GT+ SF++AN+ L +  P  + YDA  PI+T +  LPP
Sbjct:  129 VMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPIAEAAGSFGVMEVDEEMRILGFEEKPQQP--------------KHSPGNPEMCLASMGNYVFNTEFLFDQLKKDALNESSDRDFGKDIIPAIIEKHNVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTFQEQLPP 305          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_SERP5 (Glucose-1-phosphate adenylyltransferase OS=Serratia proteamaculans (strain 568) GN=glgC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.511e-26
Identity = 80/294 (27.21%), Postives = 132/294 (44.90%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASANEQFLKAYLFN-----------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP------XXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            V+IL+GDH+Y+MDY   + +H + GA  T++CLP+    AS+FG+M+++    +  F EKP          D +              +ASMG+Y+F  + L  LL     T    +DFG ++IP    ++   A+ F             YW D+GT+ +++ ANL L +  P    YD   PI T    LPP                     G  ++ S + HSV+  R R+N+   +  T+               L P+    V +G + +++ CI+D+   I + ++I
Sbjct:  136 VVILAGDHIYKMDYSRMLIDHVEKGAQCTVACLPVPRDEASEFGVMEVDENDLILEFLEKPSNPPPMPGNPDMS--------------LASMGIYIFNADYLFQLLEEDMSTPGSTHDFGKDLIPKITAQKAAWAHPFTLSCVTSNPELPPYWRDVGTLEAYWRANLDLASVTPELDMYDRAWPIRTHMEPLPPAKFVQDRSGSHGMTMNSLVSGGCIVSGSVVVHSVLFPRVRVNSFCTIDSTV---------------LLPD----VNVGRSCRLRRCIIDRACHIPEGMVI 396          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_GEOMG (Glucose-1-phosphate adenylyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.694e-26
Identity = 89/302 (29.47%), Postives = 137/302 (45.36%), Query Frame = 1
Query:   13 DDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR--WRFPTANDFGSEIIPAS-ANEQFLKAYLFND------------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFI------TSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVIIANFEG 855
            D V I  GDH+YRMD    +  HR++ ADITI+ L +    A  FG+  ++++ RV +F EKP        A   T+ G        +   ASMG Y+F    L+ +L+   +     DFG  +IP   A +  + AY FND            YW+D+GTI S++EAN+ L    P  + Y+   PI T++ N PP                S++      + S +  S+VG  +++N+   ++D++     L+E               V +G N KI+  I+DKN  I     I    G
Sbjct:  124 DYVAIFGGDHIYRMDVSQMIGYHRRNRADITIAALEVPVEEARRFGVFCVDDDNRVTAFEEKP--------ANPVTIPG-------RETCFASMGNYIFSTRRLIEVLQEGKKLHADLDFGKHVIPMMLAKKDRVFAYNFNDNLIPGMKPEERGYWKDVGTIDSYYEANMELIHVSPQLNLYNYKWPILTNQGNYPPAKTVFDEDGRRGMNIDSYVCAGCITSGSVVRRSIVGPLTKVNSYSLVEDSI-----LFEN--------------VNVGRNVKIRRAIIDKNITIPDGTTIGYDHG 391          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_CLOAB (Glucose-1-phosphate adenylyltransferase OS=Clostridium acetobutylicum GN=glgC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.694e-26
Identity = 85/285 (29.82%), Postives = 132/285 (46.32%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---PTANDFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADL-YETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVIIANFEGL 858
            V+ILSGDH+Y+M+Y++ +  H++  AD TI+   +    AS FG+M  + + R+  F EKPK                     + K  +ASMG+Y+F    L   L        + NDFG  IIP   N ++ L AY FN YW+D+GTI+S +EAN+ L       + YD    IY+    +PP                    +S ++ S+V +   I         + PG  +  +T    + + P     V +G N  IK+ I+  NAR+  NVI+   + +
Sbjct:  122 VVILSGDHIYKMNYLEMLDFHKKKNADATIAVFEVPLNEASRFGIMNTDEDDRINEFEEKPK---------------------KPKNNLASMGIYIFNWRFLKRFLEEDARDESSNNDFGKNIIPNMLNKKRKLYAYRFNGYWKDVGTIQSLWEANMDLLDDNNSLNIYDPKWKIYSVNPTMPPQY---------------IACNSDVKRSLV-VEGCIVLGKVYNSVLFPGVYIGRDTIITNSVIMPN----VIVGNNVIIKKSIIGSNARVDDNVIVGTNDNI 365          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_ANADF (Glucose-1-phosphate adenylyltransferase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=glgC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.694e-26
Identity = 81/295 (27.46%), Postives = 135/295 (45.76%), Query Frame = 1
Query:   25 ILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL-NLLRWRFPT--ANDFGSEIIPASANEQFLKAYLF------------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXH--------GSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            I   DH+YRMD    +Q H+  GAD+T++ +P+    AS+FG+++++ +GR+  F EKPK              G+     +    +ASMG YLF  + L+  ++R    T  A+DFG  I+ A    + +  Y F              YW D+G++ ++++AN+ L    P FS Y+   PI+T++ N PP              +        G  I+     H ++  + RIN+   ++D++     L+E               V IG + KI+  I+DK+  I  N  I
Sbjct:  120 IFGADHVYRMDVRQMLQFHQDKGADLTVAAIPVPVEEASEFGIIEVDGDGRMIGFVEKPKA-------------GVKTMPGDPTRALASMGNYLFTTDALVQEIVRDAGDTKSAHDFGKSIVAAMYERKRVFVYDFAKNVVPGQGDKERGYWRDVGSLDAYYQANMDLVDVDPSFSLYNDRWPIFTAQHNFPPVKFVFNNQTEGRVGYATDSLVSEGCIISGGHAHHCILSPKVRINSYSLVEDSI-----LFEN--------------VNIGRHCKIRRAIVDKHVEIPANTTI 382          
The following BLAST results are available for this feature:
BLAST of DY259988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
GLGC_SHEFN3.454e-2637.70Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEB93.454e-2636.65Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_NITMU3.454e-2628.98Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC_GEOTN3.454e-2631.64Glucose-1-phosphate adenylyltransferase OS=Geobaci... [more]
GLGC_SHEB84.511e-2636.13Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEB24.511e-2636.13Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SERP54.511e-2627.21Glucose-1-phosphate adenylyltransferase OS=Serrati... [more]
GLGC_GEOMG7.694e-2629.47Glucose-1-phosphate adenylyltransferase OS=Geobact... [more]
GLGC_CLOAB7.694e-2629.82Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_ANADF7.694e-2627.46Glucose-1-phosphate adenylyltransferase OS=Anaerom... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259988 ID=DY259988; Name=DY259988; organism=Citrus clementina; type=EST; length=1032bp
AATAAAGTAATTGATGATGTCCTGATTCTATCTGGGGATCACTTGTATAG
AATGGACTATATGGACTTTGTCCAGAATCATCGGCAGAGTGGTGCAGACA
TCACTATCTCTTGTCTGCCTATGGACGACCGTCGTGCCTCAGATTTTGGT
CTGATGAAAATTAACAACGAGGGAAGAGTCCCTTCTTTCAGTGAAAAGCC
TAAAGGGAAAGACTTGAAAGCAATGGCAGTAGATACAACAGTTTTGGGAC
TTTCTAAACAAGAGGCTGAAGAGAAGCCATACATTGCTTCCATGGGTGTG
TATCTCTTCAAAAAGGAGATACTTCTTAATCTTTTGAGATGGCGTTTTCC
AACTGCGAATGACTTTGGATCAGAAATAATCCCTGCATCAGCCAATGAAC
AATTCTTAAAGGCTTATCTGTTCAATGATTACTGGGAAGATATAGGAACC
ATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGCGCATCCACCGAT
GTTTAGTTTCTATGATGCCACAAAGCCCATCTACACGTCTCGAAGAAACC
TACCACCATCGAAGATTGATGATAGCAAGATTGTTGATTCCATCATATCA
CATGGAAGTTTCATAACAAGCAGCTTCATAGAACACAGTGTCGTTGGCAT
CAGATCTCGAATCAATGCTAACGTTCACTTAAAGGATACCATGATGCCTG
GAGCTGACCTTTACGAGACAGACGCTGAAGTAGCCTCACTACAACCTGAG
GGGAGAGTTCCCGTTGGAATTGGTGAAAACACAAAAATAAAAGAGTGCAT
CCTTGACAAAAATGCCCGAATAGGGAAAAATGTTATTATTGCCAATTTCG
AAGGGCTCCCAAAAGGCTGATAAATCCGCCAAAGGGTTTCCCCTCCCGCC
CCGGGGTTTCCCCGTCTTATTAAAAATTCCCGTTTACCCCCCACCGAATT
GGGAATATAAAAAAAATTTTCCCCTCCCCCCCCTCTTTTGCTTGAATTTG
GGGGTGCCACCCAAAAAAATCTTTTAAAGGAA
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