DY259988

Overview
NameDY259988
Unique NameDY259988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1032
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_BACST (Glucose-1-phosphate adenylyltransferase OS=Bacillus stearothermophilus GN=glgC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.005e-25
Identity = 80/256 (31.25%), Postives = 122/256 (47.66%), Query Frame = 1
Query:   13 DDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL---LNLLRWRFPTANDFGSEIIPASANEQFLK-AYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDT-MMPGADLYE-TDAEVASLQPEGRVP 762
            D VL+LSGDH+Y+MDY   +  H    AD+TIS + +    AS FG+M  N E  +  F+EKP                     AE K  +ASMG+Y+F   +L   L +      +++DFG ++IP    E+    AY F  YW+D+GT++S +EAN+ L         +D +  IY+   N PP              +   +    +E SV+    RI     +K++ +MPGA + E    E A + P+  +P
Sbjct:  119 DYVLVLSGDHIYKMDYQHMLDYHIAKQADVTISVIEVPWEEASRFGIMNTNEEMEIVEFAEKP---------------------AEPKSNLASMGIYIFNWPLLKQYLQIDNANPHSSHDFGKDVIPMLLREKKRPFAYPFEGYWKDVGTVKSLWEANMDLLDENNELDLFDRSWRIYSVNPNQPPQYISPEAEVSDSLVNEGCVVEGTVERSVLFQGVRIGKGAVVKESVIMPGAAVSEGAYVERAIVTPDSIIP 353          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_THEP1 (Glucose-1-phosphate adenylyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glgC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.312e-25
Identity = 83/281 (29.54%), Postives = 125/281 (44.48%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL---RWRFPTANDFGSEIIPASANEQF--LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVIIAN 846
            VLILSGDH+Y M+Y D +  H    AD TI+C+ +    AS FG+M  N +G++  F EKP                     A+ +  +AS+G+Y+F  E L  +L        +++DFG ++IP    E    L A+ F+ YW D+GT+RS++EANL L    P F+ YD     +T    +PP               GS +++S +                       GA++Y         Q      V IG  T +K  ++   A IG+N  + N
Sbjct:  120 VLILSGDHVYAMNYNDLIDYHLLKEADGTIACMEVPIEEASRFGIMITNVDGKIVDFEEKP---------------------AKPRSNLASLGIYVFNYEFLKKVLIEDENDPNSSHDFGKDVIPRILRENLGSLYAFRFDGYWRDVGTLRSYWEANLELVLPVPPFNLYDPNWRFFTHTEEMPPAYVAP----------GSKVSTSLVSE---------------------GAEVYGNVFNSVIFQ-----GVKIGRGTVVKNSVIMTRAEIGENCYLEN 343          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_THEMA (Glucose-1-phosphate adenylyltransferase OS=Thermotoga maritima GN=glgC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.312e-25
Identity = 83/277 (29.96%), Postives = 128/277 (46.21%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL---RWRFPTANDFGSEIIPASANEQF--LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNV 834
            VLILSGDH+Y M+Y D +  H    AD TI+C+ +    AS FG+M  + +GR+  F EKP                     A+ +  +AS+G+Y+F  E L  +L        +++DFG ++IP    E    L A+ F+ YW D+GT+RS++EANL L    P F+ YD     +T    +PP               GS +++S +        + +  NV     +  G  +        S+         IGEN  ++  I+ +N +IG NV
Sbjct:  120 VLILSGDHVYAMNYNDLIDYHLLKEADGTIACMEVPIEEASRFGIMITDVDGRIVDFEEKP---------------------AKPRSNLASLGIYVFNYEFLKKVLIEDENDPNSSHDFGKDVIPRILRENLGSLYAFRFDGYWRDVGTLRSYWEANLELVLPVPPFNLYDPNWRFFTHTEEMPPAYVAP----------GSKVSTSLVSEG-----AEVYGNV-FNSVIFQGVKIGRGTVVKNSVI---MTRTEIGENCYLENVIIAENVKIGSNV 356          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_THEAB (Glucose-1-phosphate adenylyltransferase OS=Thermosipho africanus (strain TCF52B) GN=glgC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.312e-25
Identity = 81/280 (28.93%), Postives = 136/280 (48.57%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK----KEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVIIAN 846
            V+ILSGDH+Y MDY + +  H+   A  T++C+ +    AS FG+M  + E R+  F EKPK                     + K  +AS+G+Y+F+    +E+L+   +    +++DFG +IIP     + + A+ F+ YW+D+GTI S++E+NL LT   P F+ +D    IYT  + +PP                    S+ +++S++                  G ++Y   A   S+  +G   V IG+ + +K  ++  N RIG+N  I N
Sbjct:  120 VVILSGDHIYSMDYNELLDYHKAKSALATVACMEVPLSEASRFGIMVTDLENRIIEFQEKPK---------------------QPKSTLASLGIYVFQWSFIREVLIEDAK-NDQSSHDFGKDIIPKIIQTERVFAFPFDGYWKDVGTIYSYWESNLELTRPIPPFNIHDENWRIYTHSKEMPP---------------AYIADSTKVKNSLIS----------------EGCEIY--GAVSNSVLAQG---VEIGKGSIVKNSVIMSNVRIGENCYIEN 341          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_MANSM (Glucose-1-phosphate adenylyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=glgC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.312e-25
Identity = 82/286 (28.67%), Postives = 137/286 (47.90%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL-RWRFP-TANDFGSEIIPASANEQFLKAYLFND-----------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXH-----GSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARI 822
            VLIL+GDH+Y+MDY   + +H  SGA  T+ C+ +    A +FG+M +N   +V +F EKP  +D  AM              +    +ASMG+Y+F  + L   L R + P T++DFG +++P + N+  L A+ F+            YW+D+GT+ SF++AN+ L +  P    YD T PI  +     P              +     G  + ++ I +SV+     +NA                +  E + + P+    V IG+N  ++ CI+D++ +I
Sbjct:  135 VLILAGDHIYKMDYSQMLLDHVSSGAKCTVGCIEVPREEAKEFGVMAVNETLKVKAFVEKP--QDPPAMI------------GKPNSSLASMGIYVFNADYLYEALDRIKTPNTSHDFGKDVMPLALNDGVLYAHPFDRSCKGRNTEGAIYWKDVGTLDSFWQANIDLVSEEPQLDIYDQTWPIRGNPVQAYPSKFFYDEPNCKQVDNSLIAGGCMVKNASISYSVLFDNVSVNAG---------------SSIEQSVILPQ----VKIGKNCMLRRCIIDRHVQI 387          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_THESQ (Glucose-1-phosphate adenylyltransferase OS=Thermotoga sp. (strain RQ2) GN=glgC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.714e-25
Identity = 82/277 (29.60%), Postives = 128/277 (46.21%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL---RWRFPTANDFGSEIIPASANEQF--LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNV 834
            VLILSGDH+Y M+Y D +  H    AD TI+C+ +    AS FG+M  + +GR+  F EKP                     A+ +  +AS+G+Y+F  E L  +L        +++DFG ++IP    E    L A+ F+ YW D+GT+RS++EANL L    P F+ YD     +T    +PP               GS +++S +        + +  NV     +  G  +        S+         IGEN  ++  I+ +N ++G NV
Sbjct:  120 VLILSGDHVYAMNYNDLIDYHLLKEADGTIACMEVPIEEASRFGIMITDVDGRIVDFEEKP---------------------AKPRSNLASLGIYVFNYEFLKKVLIEDENDPNSSHDFGKDVIPRILRENLGSLYAFRFDGYWRDVGTLRSYWEANLELVLPVPPFNLYDPNWRFFTHTEEMPPAYVAP----------GSKVSTSLVSEG-----AEVYGNV-FNSVIFQGVKIGRGTVVKNSVI---MTRTEIGENCYLENVIIAENVKVGNNV 356          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_OCEIH (Glucose-1-phosphate adenylyltransferase OS=Oceanobacillus iheyensis GN=glgC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.714e-25
Identity = 72/214 (33.64%), Postives = 109/214 (50.93%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL---RWRFPTANDFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANL-ALTAHPPMFSFYDATKPIYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVV 645
            VLI+SGDH+Y+MDY   ++ H+++ AD+TIS + +    A  FG++  N+E  +  F EKPK                          +ASMG+Y+F  + L   L     +  ++ DFG +IIP+  N Q  L A+ FN YW+D+GTI+S++EAN+  L  +   FS +D    IYT   NLPP              +   I    I++S+V
Sbjct:  120 VLIISGDHIYQMDYQQMLEQHKRTNADVTISVIEVPWAEAGRFGILHANDEQIIYEFEEKPKNPSSN---------------------LASMGIYIFNWKTLKKYLIEDANKPNSSRDFGKDIIPSMLNNQHRLYAFKFNGYWKDVGTIQSYWEANMDVLKDNNGYFSLHDRNWRIYTHDSNLPPHFIGTNGKAVNSYINSGSIIYGHIKNSIV 312          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_BACLD (Glucose-1-phosphate adenylyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=glgC PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.924e-25
Identity = 83/286 (29.02%), Postives = 130/286 (45.45%), Query Frame = 1
Query:   13 DDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL---RWRFPTANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP------XXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            + VLILSGDH+Y+MDY   ++ H +  AD TI+ + +    A  FG++  N++  + SF EKPK                       K  +ASMGVY+FK  +L + L        +++DFG ++IPA   E + L AY F  YW+D+GT+RS +EAN+ L    P    ++    IY+   NLPP                    +GS   S   +   +G  S I  +V + D  +        + E A +    R+P G     +  E +L     + K+ ++
Sbjct:  119 EHVLILSGDHIYKMDYGKMLEYHAEKQADATIAVIEVSWAEAGRFGILHTNDKMEITSFEEKPK---------------------YPKSNLASMGVYVFKWSVLEDALERDEKNSASSHDFGKDVIPALLEENKRLNAYPFKGYWKDVGTVRSLWEANMDLLGDHPPLDLFERNWRIYSVSPNLPPQFVADLAEIKESLVSEGCTVYGSVTRSVIFQRVAIGRHSAIKRSVVMHDVSIG----EYVEIENAIVSAGIRIPDGFCAKPEDGEVLLITEEYVKKHKVV 379          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_YERPY (Glucose-1-phosphate adenylyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=glgC PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.818e-25
Identity = 78/294 (26.53%), Postives = 138/294 (46.94%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASANEQFLKAYLFN-----------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP------XXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            ++IL+GDH+Y+MDY   + +H + GA+ T++C+P+     S+FG+M++  + ++ +F EKP        A    + G      +    +ASMG+Y+F  + L  LL     T   ++DFG +IIP     + + A+ F+            YW D+GT+ +++ ANL L +  P    YD   PI T    LPP                     G  ++ S + HSV+  R R+N+   +  ++               L P+    V +G + +++ CI+D+   I + ++I
Sbjct:  136 IVILAGDHIYKMDYSRMLLDHVEKGAECTVACIPVPISEGSEFGIMEVTADYQITAFYEKP--------ANPPPIPG------DPSNALASMGIYIFNADYLFKLLEEDNNTPGSSHDFGKDIIPQLTARKVVWAHPFDLSCVTSNAELPPYWRDVGTLDAYWRANLDLASVTPELDMYDRAWPIRTHMEPLPPAKFVQDRSGSHGMTMNSLVSGGCIVSGSVVVHSVLFPRVRVNSFCTIDSSL---------------LLPD----VHVGRSCRLRRCIIDRACHIPEGMVI 396          
BLAST of DY259988 vs. ExPASy Swiss-Prot
Match: GLGC_YERPS (Glucose-1-phosphate adenylyltransferase OS=Yersinia pseudotuberculosis GN=glgC PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.818e-25
Identity = 78/294 (26.53%), Postives = 138/294 (46.94%), Query Frame = 1
Query:   19 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKINNEGRVPSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASANEQFLKAYLFN-----------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP------XXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMPGADLYETDAEVASLQPEGRVPVGIGENTKIKECILDKNARIGKNVII 840
            ++IL+GDH+Y+MDY   + +H + GA+ T++C+P+     S+FG+M++  + ++ +F EKP        A    + G      +    +ASMG+Y+F  + L  LL     T   ++DFG +IIP     + + A+ F+            YW D+GT+ +++ ANL L +  P    YD   PI T    LPP                     G  ++ S + HSV+  R R+N+   +  ++               L P+    V +G + +++ CI+D+   I + ++I
Sbjct:  136 IVILAGDHIYKMDYSRMLLDHVEKGAECTVACIPVPISEGSEFGIMEVTADYQITAFYEKP--------ANPPPIPG------DPSNALASMGIYIFNADYLFKLLEEDNNTPGSSHDFGKDIIPQLTARKVVWAHPFDLSCVTSNAELPPYWRDVGTLDAYWRANLDLASVTPELDMYDRAWPIRTHMEPLPPAKFVQDRSGSHGMTMNSLVSGGCIVSGSVVVHSVLFPRVRVNSFCTIDSSL---------------LLPD----VHVGRSCRLRRCIIDRACHIPEGMVI 396          
The following BLAST results are available for this feature:
BLAST of DY259988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
GLGC_BACST1.005e-2531.25Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
GLGC_THEP11.312e-2529.54Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_THEMA1.312e-2529.96Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_THEAB1.312e-2528.93Glucose-1-phosphate adenylyltransferase OS=Thermos... [more]
GLGC_MANSM1.312e-2528.67Glucose-1-phosphate adenylyltransferase OS=Mannhei... [more]
GLGC_THESQ1.714e-2529.60Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_OCEIH1.714e-2533.64Glucose-1-phosphate adenylyltransferase OS=Oceanob... [more]
GLGC_BACLD2.924e-2529.02Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
GLGC_YERPY3.818e-2526.53Glucose-1-phosphate adenylyltransferase OS=Yersini... [more]
GLGC_YERPS3.818e-2526.53Glucose-1-phosphate adenylyltransferase OS=Yersini... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259988 ID=DY259988; Name=DY259988; organism=Citrus clementina; type=EST; length=1032bp
AATAAAGTAATTGATGATGTCCTGATTCTATCTGGGGATCACTTGTATAG
AATGGACTATATGGACTTTGTCCAGAATCATCGGCAGAGTGGTGCAGACA
TCACTATCTCTTGTCTGCCTATGGACGACCGTCGTGCCTCAGATTTTGGT
CTGATGAAAATTAACAACGAGGGAAGAGTCCCTTCTTTCAGTGAAAAGCC
TAAAGGGAAAGACTTGAAAGCAATGGCAGTAGATACAACAGTTTTGGGAC
TTTCTAAACAAGAGGCTGAAGAGAAGCCATACATTGCTTCCATGGGTGTG
TATCTCTTCAAAAAGGAGATACTTCTTAATCTTTTGAGATGGCGTTTTCC
AACTGCGAATGACTTTGGATCAGAAATAATCCCTGCATCAGCCAATGAAC
AATTCTTAAAGGCTTATCTGTTCAATGATTACTGGGAAGATATAGGAACC
ATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGCGCATCCACCGAT
GTTTAGTTTCTATGATGCCACAAAGCCCATCTACACGTCTCGAAGAAACC
TACCACCATCGAAGATTGATGATAGCAAGATTGTTGATTCCATCATATCA
CATGGAAGTTTCATAACAAGCAGCTTCATAGAACACAGTGTCGTTGGCAT
CAGATCTCGAATCAATGCTAACGTTCACTTAAAGGATACCATGATGCCTG
GAGCTGACCTTTACGAGACAGACGCTGAAGTAGCCTCACTACAACCTGAG
GGGAGAGTTCCCGTTGGAATTGGTGAAAACACAAAAATAAAAGAGTGCAT
CCTTGACAAAAATGCCCGAATAGGGAAAAATGTTATTATTGCCAATTTCG
AAGGGCTCCCAAAAGGCTGATAAATCCGCCAAAGGGTTTCCCCTCCCGCC
CCGGGGTTTCCCCGTCTTATTAAAAATTCCCGTTTACCCCCCACCGAATT
GGGAATATAAAAAAAATTTTCCCCTCCCCCCCCTCTTTTGCTTGAATTTG
GGGGTGCCACCCAAAAAAATCTTTTAAAGGAA
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