DY259989

Overview
NameDY259989
Unique NameDY259989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length946
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10230 contig Ccv1_Contig10230:71..1016. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL3_ORYSI (Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. indica GN=SPL3 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.178e-24
Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 2
Query:  404 VDLKLGQVNSSAED---SLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            + LKLG+  +  ED     N    P    + +PSP G  K+ + A   +Q   C V+GC+ DLS+ + YHR H+VCE HSKT +V++ G ++RFCQQCSRFH L EFD+ +R+CR+RL  HN ++
Sbjct:  131 IGLKLGK-RTYFEDVCGGQNVKSSPSGVSVATPSP-GLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARR 253          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SBP1_ANTMA (Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.178e-24
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 2
Query:  377 SSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            +S+ +G   + L   Q     ED + +     + K  + +PSG  KRA    +GS   SC V+ C ++++N + YHR HKVCE H+K P VL  G +QRFCQQCSRFH L EFDE +R+CR+RL GHN+++
Sbjct:    3 TSKGEGKRVIKLPGSQEQGEEEDDIGE----DSKKTRALTPSG--KRA----SGSTQRSCQVENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHSGLQQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERR 123          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL16_ARATH (Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.844e-24
Identity = 63/159 (39.62%), Postives = 82/159 (51.57%), Query Frame = 2
Query:  296 DWNLKP-AWDFTEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            DW +    WD   FE   +         S +      +DL L    +  E +      P + K+ S SP            G     C VD C  DLS  +DYHR HKVCE+HSK  + L+  Q QRFCQQCSRFH L EFDEG+R+CR+RL+GHN+++
Sbjct:    8 DWQMNRWKWDGQRFEAIELQG------ESLQLSNKKGLDLNLPCGFNDVEGTPVDLTRP-SKKVRSGSPGSG------GGGGGNYPKCQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLDGHNRRR 153          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL15_ORYSJ (Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.844e-24
Identity = 50/100 (50.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:  470 GASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            G+    S    G      +   G     C VD C +DL+N +DYHR HKVCE+H KT + L+  Q QRFCQQCSRFH L EFDEG+R+CR+RL GHN+++
Sbjct:  159 GSPGSASGGGGGGGGGGNSGGGGGSYPMCQVDDCRADLTNAKDYHRRHKVCEIHGKTTKALVGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRR 258          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL15_ORYSI (Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.844e-24
Identity = 50/100 (50.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:  470 GASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            G+    S    G      +   G     C VD C +DL+N +DYHR HKVCE+H KT + L+  Q QRFCQQCSRFH L EFDEG+R+CR+RL GHN+++
Sbjct:  159 GSPGSASGGGGGGGGGGNSGGGGGSYPMCQVDDCRADLTNAKDYHRRHKVCEIHGKTTKALVGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRR 258          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL12_ARATH (Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.714e-24
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 2
Query:  539 SQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            S+   C VD C +DLS  +DYHR HKVCE+HSK    L+ G  QRFCQQCSRFH LEEFDEG+R+CR+RL GHN+++
Sbjct:  122 SRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRR 198          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL11_ARATH (Squamosa promoter-binding-like protein 11 OS=Arabidopsis thaliana GN=SPL11 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.714e-24
Identity = 59/147 (40.14%), Postives = 83/147 (56.46%), Query Frame = 2
Query:  329 EFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            +F Q   P    V  +S+ +     + LKLG+   S E       E  A  M+  +PS    +++          C +DGC+ DLS+ + YHR HKVCE HSK P+V + G ++RFCQQCSRFH + EFDE +R+CRKRL  HN ++
Sbjct:  104 DFVQVKAPTALEVSVASAES----DLCLKLGKRTYSEEYWGRNNNEISAVSMKLLTPSVVAGKSKLCGQSMPVPRCQIDGCELDLSSAKGYHRKHKVCEKHSKCPKVSVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARR 246          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL12_ORYSJ (Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. japonica GN=SPL12 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.851e-24
Identity = 46/91 (50.55%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  497 PSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            PS   K+ + +   +Q++ C V+GC  DLS+ R+YHR HKVCE HSK P+V++ G ++RFCQQCSRFH L EFD+ +++CR+RL  HN ++
Sbjct:  161 PSTVVKKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARR 251          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL12_ORYSI (Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.851e-24
Identity = 46/91 (50.55%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  497 PSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            PS   K+ + +   +Q++ C V+GC  DLS+ R+YHR HKVCE HSK P+V++ G ++RFCQQCSRFH L EFD+ +++CR+RL  HN ++
Sbjct:  161 PSTVVKKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARR 251          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL1_ARATH (Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.144e-23
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 2
Query:  548 ASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQGNLSQIPCPDRN 805
            A C V+ C++DLS  +DYHR HKVCE+HSK     + G  QRFCQQCSRFH L+EFDEG+R+CR+RL GHN+++   +  P  + N
Sbjct:  104 AVCQVENCEADLSKVKDYHRRHKVCEMHSKATSATVGGILQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNPEPGANGN 189          
The following BLAST results are available for this feature:
BLAST of DY259989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
SPL3_ORYSI2.178e-2444.80Squamosa promoter-binding-like protein 3 OS=Oryza ... [more]
SBP1_ANTMA2.178e-2444.27Squamosa promoter-binding protein 1 OS=Antirrhinum... [more]
SPL16_ARATH2.844e-2439.62Squamosa promoter-binding-like protein 16 OS=Arabi... [more]
SPL15_ORYSJ2.844e-2450.00Squamosa promoter-binding-like protein 15 OS=Oryza... [more]
SPL15_ORYSI2.844e-2450.00Squamosa promoter-binding-like protein 15 OS=Oryza... [more]
SPL12_ARATH3.714e-2462.34Squamosa promoter-binding-like protein 12 OS=Arabi... [more]
SPL11_ARATH3.714e-2440.14Squamosa promoter-binding-like protein 11 OS=Arabi... [more]
SPL12_ORYSJ4.851e-2450.55Squamosa promoter-binding-like protein 12 OS=Oryza... [more]
SPL12_ORYSI4.851e-2450.55Squamosa promoter-binding-like protein 12 OS=Oryza... [more]
SPL1_ARATH3.144e-2354.65Squamosa promoter-binding-like protein 1 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259989 ID=DY259989; Name=DY259989; organism=Citrus clementina; type=EST; length=946bp
CACTTCTTCTCTTTCTCCAACCATCTTCTTAGCCTTTCTACATTCAAGTT
TATAGGATTTCTTCAAAAAAAAAATATATATTATTTTATTTTTATCTTTG
AGTCTTGACTTAAGCCACTTTATTGGTTAGTGATGGAATCAATGTCAGTG
AATAAATGGCTGCAAAGAGAAACCAGTCTCCATATGCTGAACCTGTCTTG
AAAGAGAAGCATGATTGGCTTTGGCTATGTTTGAGAAGGTGTGGAGGGAA
TTAATTAAAGAATAAAGTCCAACTCTTCAATTGTTGGAGTTTATGGACTG
GAACTTGAAACCAGCTTGGGATTTTACTGAATTTGAGCAAGAAGCTATTC
CTAACGTAGATGCAGTTGATGAGTCAAGTAGCAGGACAAAAGGGAATTTC
TCAGTTGATTTGAAGCTGGGTCAGGTTAATAGTTCGGCTGAAGATTCGTT
GAATAAGTGTAAGGAGCCTGGTGCCTCAAAAATGGAGTCTCCTTCACCTT
CAGGGTCATTCAAGAGGGCCAGAGCAGCTAACAATGGAAGCCAGACTGCG
TCATGTCTTGTTGATGGGTGTGACTCGGACCTTAGTAATTGTAGGGATTA
CCATAGGCCGCATAAGGTGTGTGAGCTCCACTCGAAGACGCCTCAGGTTT
TGATTTGTGGGCAGAAGCAACGGTTCTGTCAGCAATGCAGCAGATTTCAT
TGCCTGGAGGAGTTTGATGAAGGGGAGAGAAACTGCAGGAAACGTCTTGA
AGGGCACAACCAAAAACAAGGAAACCTCAGCCAGATCCCCTGTCCCGACC
GGAACCTTTTTGCCCAATACCAAGGGCCCTCTTATTACCTTTCCCCGTTC
CATTAGTACCCGCCCGCACGGGGGGGAAACCCCCCGGGCTGGAGTTGTAA
AACGGAAGCAAAAGCAGGGGGTAAAAGAGGCTCCACCGTTAAATTG
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