DY259989

Overview
NameDY259989
Unique NameDY259989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length946
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10230 contig Ccv1_Contig10230:71..1016. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL15_ARATH (Squamosa promoter-binding-like protein 15 OS=Arabidopsis thaliana GN=SPL15 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.144e-23
Identity = 65/168 (38.69%), Postives = 85/168 (50.60%), Query Frame = 2
Query:  419 GQVNSSAEDSLNKCKEPGASKM------ESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQGNLSQIPCPDRNLFAQYQ---GPSYYLSPFH*YPPARGGNPPGWS 895
            GQ  S    S       G  +       E  S S S  R       S TA C V+GC  DLSN + Y+  HKVC +HSK+ +V++ G  QRFCQQCSRFH L EFD  +R+CR+RL  HN+++    + P P   LF  +     PS Y +P      +  G+P  WS
Sbjct:    8 GQAESGGSSSTESSSLSGGLRFGQKIYFEDGSGSRSKNRVNTVRKSSTTARCQVEGCRMDLSNVKAYYSRHKVCCIHSKSSKVIVSGLHQRFCQQCSRFHQLSEFDLEKRSCRRRLACHNERR----RKPQPTTALFTSHYSRIAPSLYGNPNAAMIKSVLGDPTAWS 171          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL6_ORYSJ (Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.364e-23
Identity = 45/86 (52.33%), Postives = 61/86 (70.93%), Query Frame = 2
Query:  512 KRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            K+ R         +C V+GC +DL+  RDYHR HKVCE+H+K    ++    QRFCQQCSRFH L+EFDEG+R+CR+RL GHN+++
Sbjct:  138 KKIRVQGGSPSGPACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRFHPLQEFDEGKRSCRRRLAGHNRRR 223          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL8_ARATH (Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana GN=SPL8 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 9.149e-23
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 2
Query:  509 FKRARAANNGS----QTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQGNLSQ 784
            ++R+R   +G      T  C  +GC++DLS+ + YHR HKVCE HSK   V+  G  QRFCQQCSRFH L EFD G+R+CRKRL  HN+++    Q
Sbjct:  169 YRRSRPGESGMANSLSTPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKCHQ 264          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL14_ORYSJ (Squamosa promoter-binding-like protein 14 OS=Oryza sativa subsp. japonica GN=SPL14 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.561e-22
Identity = 50/117 (42.74%), Postives = 71/117 (60.68%), Query Frame = 2
Query:  419 GQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            G  ++SA    +  K  G  +       G    A A         C V+GC +DLS  ++Y+  HKVC +HSK P+V++ G +QRFCQQCSRFH L EFD+G+R+CR+RL GHN+++
Sbjct:   59 GSGSASAAPPSSSSKAAGGGRGGGGKNKGKGVAAAAPPPPPPPPRCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERR 175          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL7_ORYSJ (Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. japonica GN=SPL7 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 2.038e-22
Identity = 43/86 (50.00%), Postives = 63/86 (73.26%), Query Frame = 2
Query:  512 KRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            ++ +AA        C V+GCD  L   ++YHR HKVCE+H+K P+V++ G +QRFCQQCSRFH L EFD+ +++CR+RL GHN+++
Sbjct:   94 RKEKAATAVPVVPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKSCRRRLAGHNERR 179          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL7_ORYSI (Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. indica GN=SPL7 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.038e-22
Identity = 43/86 (50.00%), Postives = 63/86 (73.26%), Query Frame = 2
Query:  512 KRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            ++ +AA        C V+GCD  L   ++YHR HKVCE+H+K P+V++ G +QRFCQQCSRFH L EFD+ +++CR+RL GHN+++
Sbjct:   94 RKEKAATAVPVVPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKSCRRRLAGHNERR 179          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL9_ARATH (Squamosa promoter-binding-like protein 9 OS=Arabidopsis thaliana GN=SPL9 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.662e-22
Identity = 58/133 (43.61%), Postives = 76/133 (57.14%), Query Frame = 2
Query:  377 SSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGS--QTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            SS    +FS  L  GQ     ED        G     S S   S +R R   +G   Q   C V+GC  DL+N + Y+  H+VC +HSKTP+V + G +QRFCQQCSRFH L EFD  +R+CR+RL GHN+++
Sbjct:   21 SSTESSSFSGGLMFGQ-KIYFEDG-------GGGSGSSSSGGRSNRRVRGGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNERR 145          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL4_ORYSJ (Squamosa promoter-binding-like protein 4 OS=Oryza sativa subsp. japonica GN=SPL4 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.662e-22
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  515 RARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            RA     G     C V+GC  +L   +DYHR H+VCE HSK P+V++ GQ++RFCQQCSRFH L EFD+ +R+CR+RL  HN ++
Sbjct:   55 RAEEGGGGGGEVRCQVEGCGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLYDHNARR 139          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL13_ORYSJ (Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica GN=SPL13 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.930e-22
Identity = 53/123 (43.09%), Postives = 71/123 (57.72%), Query Frame = 2
Query:  401 SVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            S  +  G  +SS+  S+      GA +    +PSG          G     C V+ C  DLS    Y+R HKVC+ HSK P VL+ G +QRFCQQCSRFH L EFD+ +R+CR+RL GHN+++
Sbjct:   69 SAAVAAGASSSSSSSSVAAAARRGAGRAGGGAPSG----------GGGGPRCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNERR 181          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL3_ARATH (Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana GN=SPL3 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 7.745e-22
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  539 SQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            S +  C V+ C +D+S  + YH+ HKVC+ H+K P V I G  QRFCQQCSRFH L EFDE +R+CR+RL GHN+++
Sbjct:   49 SSSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFHALSEFDEAKRSCRRRLAGHNERR 125          
The following BLAST results are available for this feature:
BLAST of DY259989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
SPL15_ARATH3.144e-2338.69Squamosa promoter-binding-like protein 15 OS=Arabi... [more]
SPL6_ORYSJ5.364e-2352.33Squamosa promoter-binding-like protein 6 OS=Oryza ... [more]
SPL8_ARATH9.149e-2350.00Squamosa promoter-binding-like protein 8 OS=Arabid... [more]
SPL14_ORYSJ1.561e-2242.74Squamosa promoter-binding-like protein 14 OS=Oryza... [more]
SPL7_ORYSJ2.038e-2250.00Squamosa promoter-binding-like protein 7 OS=Oryza ... [more]
SPL7_ORYSI2.038e-2250.00Squamosa promoter-binding-like protein 7 OS=Oryza ... [more]
SPL9_ARATH2.662e-2243.61Squamosa promoter-binding-like protein 9 OS=Arabid... [more]
SPL4_ORYSJ2.662e-2251.76Squamosa promoter-binding-like protein 4 OS=Oryza ... [more]
SPL13_ORYSJ5.930e-2243.09Squamosa promoter-binding-like protein 13 OS=Oryza... [more]
SPL3_ARATH7.745e-2254.55Squamosa promoter-binding-like protein 3 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259989 ID=DY259989; Name=DY259989; organism=Citrus clementina; type=EST; length=946bp
CACTTCTTCTCTTTCTCCAACCATCTTCTTAGCCTTTCTACATTCAAGTT
TATAGGATTTCTTCAAAAAAAAAATATATATTATTTTATTTTTATCTTTG
AGTCTTGACTTAAGCCACTTTATTGGTTAGTGATGGAATCAATGTCAGTG
AATAAATGGCTGCAAAGAGAAACCAGTCTCCATATGCTGAACCTGTCTTG
AAAGAGAAGCATGATTGGCTTTGGCTATGTTTGAGAAGGTGTGGAGGGAA
TTAATTAAAGAATAAAGTCCAACTCTTCAATTGTTGGAGTTTATGGACTG
GAACTTGAAACCAGCTTGGGATTTTACTGAATTTGAGCAAGAAGCTATTC
CTAACGTAGATGCAGTTGATGAGTCAAGTAGCAGGACAAAAGGGAATTTC
TCAGTTGATTTGAAGCTGGGTCAGGTTAATAGTTCGGCTGAAGATTCGTT
GAATAAGTGTAAGGAGCCTGGTGCCTCAAAAATGGAGTCTCCTTCACCTT
CAGGGTCATTCAAGAGGGCCAGAGCAGCTAACAATGGAAGCCAGACTGCG
TCATGTCTTGTTGATGGGTGTGACTCGGACCTTAGTAATTGTAGGGATTA
CCATAGGCCGCATAAGGTGTGTGAGCTCCACTCGAAGACGCCTCAGGTTT
TGATTTGTGGGCAGAAGCAACGGTTCTGTCAGCAATGCAGCAGATTTCAT
TGCCTGGAGGAGTTTGATGAAGGGGAGAGAAACTGCAGGAAACGTCTTGA
AGGGCACAACCAAAAACAAGGAAACCTCAGCCAGATCCCCTGTCCCGACC
GGAACCTTTTTGCCCAATACCAAGGGCCCTCTTATTACCTTTCCCCGTTC
CATTAGTACCCGCCCGCACGGGGGGGAAACCCCCCGGGCTGGAGTTGTAA
AACGGAAGCAAAAGCAGGGGGTAAAAGAGGCTCCACCGTTAAATTG
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