DY259989

Overview
NameDY259989
Unique NameDY259989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length946
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL4_ARATH (Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana GN=SPL4 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.321e-21
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 2
Query:  530 NNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            N G     C VD C +D+   + YHR HKVCE+H+K   V + G  QRFCQQCSRFH L+EFDE +R+CR+RL GHN+++
Sbjct:   46 NRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR 125          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL5_ORYSJ (Squamosa promoter-binding-like protein 5 OS=Oryza sativa subsp. japonica GN=SPL5 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.725e-21
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  524 AANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            AA +  Q   C  +GC +DLS  + YHR HKVC+ H+K   VL  G++QRFCQQCSRFH L EFDE +R+CRKRL  HN+++
Sbjct:  197 AAAHHHQPPRCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRR 278          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SBP2_ANTMA (Squamosa promoter-binding protein 2 OS=Antirrhinum majus GN=SBP2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.725e-21
Identity = 55/148 (37.16%), Postives = 82/148 (55.41%), Query Frame = 2
Query:  326 TEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            ++FE+E     +  +E     K NF+        +   +  LN  +  G    E  + SG    A+          CLV+ C +DL NC+ Y++ H+VCE+H+K P V + G  QRFCQQCSRFH L EFD+ +R+CR+RL GHN+++
Sbjct:   24 SDFEEEEEGEDEEEEEQERVVKVNFAE-------SQLKKKKLNLGEGSGGKSGEKHTASGGGVVAQPC--------CLVENCGADLRNCKKYYQRHRVCEVHAKAPVVSVEGLMQRFCQQCSRFHDLSEFDQTKRSCRRRLAGHNERR 156          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL1_ORYSJ (Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.253e-21
Identity = 61/171 (35.67%), Postives = 90/171 (52.63%), Query Frame = 2
Query:  293 MDWNLKP-AWDFTEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVN-----SSAEDSLNKCKEPGASKMESPSPSGSFKRA------RAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            ++W+L    WD   F   A P+  +  + S R  G    ++  G V+     S  +D   +C     +  +    SG   R+      R     S    C VDGC  +LS+ RDY++ HKVCE+H+K+  V I   + RFCQQCSRFH L+EFDEG+++CR RL  HN+++
Sbjct:   10 LEWDLNDWRWDSNLFL--ATPSNASPSKCSRRELGRAEGEIDFGVVDKRRRVSPEDDDGEECINAATTNGDDGQISGQRGRSSEDEMPRQGTCSSSGPCCQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFDEGKKSCRSRLAQHNRRR 178          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL10_ORYSJ (Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. japonica GN=SPL10 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.118e-20
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 2
Query:  542 QTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            Q   C  +GC +DLS  + YHR HKVCE H+K   V   G++QRFCQQCSRFH L EFDE +R+CRKRL  HN+++
Sbjct:  177 QPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRR 252          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL10_ORYSI (Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. indica GN=SPL10 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.118e-20
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 2
Query:  542 QTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            Q   C  +GC +DLS  + YHR HKVCE H+K   V   G++QRFCQQCSRFH L EFDE +R+CRKRL  HN+++
Sbjct:  177 QPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRR 252          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL8_ORYSJ (Squamosa promoter-binding-like protein 8 OS=Oryza sativa subsp. japonica GN=SPL8 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.249e-20
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 2
Query:  536 GSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQ-KQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            G     C  +GC +DLS+ + YHR HKVCE HSK P V+  G   QRFCQQCSRFH L+EFD+ +++CRKRL  HN+++
Sbjct:  179 GHHPPRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRR 257          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL8_ORYSI (Squamosa promoter-binding-like protein 8 OS=Oryza sativa subsp. indica GN=SPL8 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.249e-20
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 2
Query:  536 GSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQ-KQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            G     C  +GC +DLS+ + YHR HKVCE HSK P V+  G   QRFCQQCSRFH L+EFD+ +++CRKRL  HN+++
Sbjct:  179 GHHPPRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRR 257          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: LG1_MAIZE (Protein LIGULELESS 1 OS=Zea mays GN=LG1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.249e-20
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 2
Query:  536 GSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQ-KQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            G     C  +GC +DLS+ + YHR HKVCE HSK P V+  G   QRFCQQCSRFH L+EFD+ +++CRKRL  HN+++
Sbjct:  179 GHHPPRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRR 257          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL11_ORYSJ (Squamosa promoter-binding-like protein 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.237e-19
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  485 ESPSPSGSFKRARAANNGSQTAS-------CLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            +S S S S KR R+A      A+       C V+GC  +L   ++Y+R H+VCE H+K  +V++ GQ +RFCQQCSRFH   EFD+ +R+CR+RL  HN ++
Sbjct:   37 DSSSASASAKRGRSAAAAGDAAAVAAEAPRCQVEGCGLELGGYKEYYRKHRVCEPHTKCLRVVVAGQDRRFCQQCSRFHAPSEFDQEKRSCRRRLSDHNARR 138          
The following BLAST results are available for this feature:
BLAST of DY259989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
SPL4_ARATH1.321e-2153.75Squamosa promoter-binding-like protein 4 OS=Arabid... [more]
SPL5_ORYSJ1.725e-2154.88Squamosa promoter-binding-like protein 5 OS=Oryza ... [more]
SBP2_ANTMA1.725e-2137.16Squamosa promoter-binding protein 2 OS=Antirrhinum... [more]
SPL1_ORYSJ2.253e-2135.67Squamosa promoter-binding-like protein 1 OS=Oryza ... [more]
SPL10_ORYSJ1.118e-2056.58Squamosa promoter-binding-like protein 10 OS=Oryza... [more]
SPL10_ORYSI1.118e-2056.58Squamosa promoter-binding-like protein 10 OS=Oryza... [more]
SPL8_ORYSJ7.249e-2054.43Squamosa promoter-binding-like protein 8 OS=Oryza ... [more]
SPL8_ORYSI7.249e-2054.43Squamosa promoter-binding-like protein 8 OS=Oryza ... [more]
LG1_MAIZE7.249e-2054.43Protein LIGULELESS 1 OS=Zea mays GN=LG1 PE=2 SV=1[more]
SPL11_ORYSJ1.237e-1944.12Squamosa promoter-binding-like protein 11 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259989 ID=DY259989; Name=DY259989; organism=Citrus clementina; type=EST; length=946bp
CACTTCTTCTCTTTCTCCAACCATCTTCTTAGCCTTTCTACATTCAAGTT
TATAGGATTTCTTCAAAAAAAAAATATATATTATTTTATTTTTATCTTTG
AGTCTTGACTTAAGCCACTTTATTGGTTAGTGATGGAATCAATGTCAGTG
AATAAATGGCTGCAAAGAGAAACCAGTCTCCATATGCTGAACCTGTCTTG
AAAGAGAAGCATGATTGGCTTTGGCTATGTTTGAGAAGGTGTGGAGGGAA
TTAATTAAAGAATAAAGTCCAACTCTTCAATTGTTGGAGTTTATGGACTG
GAACTTGAAACCAGCTTGGGATTTTACTGAATTTGAGCAAGAAGCTATTC
CTAACGTAGATGCAGTTGATGAGTCAAGTAGCAGGACAAAAGGGAATTTC
TCAGTTGATTTGAAGCTGGGTCAGGTTAATAGTTCGGCTGAAGATTCGTT
GAATAAGTGTAAGGAGCCTGGTGCCTCAAAAATGGAGTCTCCTTCACCTT
CAGGGTCATTCAAGAGGGCCAGAGCAGCTAACAATGGAAGCCAGACTGCG
TCATGTCTTGTTGATGGGTGTGACTCGGACCTTAGTAATTGTAGGGATTA
CCATAGGCCGCATAAGGTGTGTGAGCTCCACTCGAAGACGCCTCAGGTTT
TGATTTGTGGGCAGAAGCAACGGTTCTGTCAGCAATGCAGCAGATTTCAT
TGCCTGGAGGAGTTTGATGAAGGGGAGAGAAACTGCAGGAAACGTCTTGA
AGGGCACAACCAAAAACAAGGAAACCTCAGCCAGATCCCCTGTCCCGACC
GGAACCTTTTTGCCCAATACCAAGGGCCCTCTTATTACCTTTCCCCGTTC
CATTAGTACCCGCCCGCACGGGGGGGAAACCCCCCGGGCTGGAGTTGTAA
AACGGAAGCAAAAGCAGGGGGTAAAAGAGGCTCCACCGTTAAATTG
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