DY259989

Overview
NameDY259989
Unique NameDY259989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length946
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL17_ORYSJ (Squamosa promoter-binding-like protein 17 OS=Oryza sativa subsp. japonica GN=SPL17 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.109e-19
Identity = 51/135 (37.78%), Postives = 72/135 (53.33%), Query Frame = 2
Query:  410 LKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFK----RARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQGNLSQIPCPDR 802
            LK G+     +D+             + S  G  K     A AA        C V+GC  DLS  + Y+  HKVC +H+K P V++ G +QRFCQQCSRFH L EFD+ +++CR+RL GHN+++   +  P   R
Sbjct:   22 LKFGKKIYFEQDAAASASAAAVESSSTSSGGGGKKGKGVAAAAAPPPPLPPRCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCSRFHQLPEFDQEKKSCRRRLAGHNERRRKPTPGPLSSR 156          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL5_ARATH (Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana GN=SPL5 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.755e-19
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 2
Query:  554 CLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQGNLS 781
            C VD C  +L+  + Y+R H+VCE+H+K     + G +QRFCQQCSRFH L EFDE +R+CR+RL GHN+++  +S
Sbjct:   63 CQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKRSCRRRLAGHNERRRKIS 138          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL7_ARATH (Squamosa promoter-binding-like protein 7 OS=Arabidopsis thaliana GN=SPL7 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.671e-16
Identity = 45/148 (30.41%), Postives = 78/148 (52.70%), Query Frame = 2
Query:  326 TEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            T  E E  P+ +     S R +     D +L  + S+  + +  C  P   +++         + +    GS  A C V  C++D+S  + YH+ H+VC   +    V++ G+ +R+CQQC +FH L +FDEG+R+CR++LE HN ++
Sbjct:   70 TPAESELDPSPEESGSGSDRVRKR---DPRL--ICSNFIEGMLPCSCP---ELDQKLEDAELPKKKRVRGGSGVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRR 209          
BLAST of DY259989 vs. ExPASy Swiss-Prot
Match: SPL9_ORYSJ (Squamosa promoter-binding-like protein 9 OS=Oryza sativa subsp. japonica GN=SPL9 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.021e-15
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  470 GASKMESPSPSGSFKRARAANNGSQTAS-----CLVDGCDSDLSNCRDYHRPHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGERNCRKRLEGHNQKQ 769
            GA K    +  GS      +  G+   +     C V GC++D+   + YHR H+VC   +    V++ G ++R+CQQC +FH L +FDE +R+CR++LE HN+++
Sbjct:  138 GARKKPKGAGRGSGAAVGGSGGGASRGTPAEMKCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRR 242          
The following BLAST results are available for this feature:
BLAST of DY259989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
SPL17_ORYSJ2.109e-1937.78Squamosa promoter-binding-like protein 17 OS=Oryza... [more]
SPL5_ARATH2.755e-1951.32Squamosa promoter-binding-like protein 5 OS=Arabid... [more]
SPL7_ARATH1.671e-1630.41Squamosa promoter-binding-like protein 7 OS=Arabid... [more]
SPL9_ORYSJ7.021e-1535.24Squamosa promoter-binding-like protein 9 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259989 ID=DY259989; Name=DY259989; organism=Citrus clementina; type=EST; length=946bp
CACTTCTTCTCTTTCTCCAACCATCTTCTTAGCCTTTCTACATTCAAGTT
TATAGGATTTCTTCAAAAAAAAAATATATATTATTTTATTTTTATCTTTG
AGTCTTGACTTAAGCCACTTTATTGGTTAGTGATGGAATCAATGTCAGTG
AATAAATGGCTGCAAAGAGAAACCAGTCTCCATATGCTGAACCTGTCTTG
AAAGAGAAGCATGATTGGCTTTGGCTATGTTTGAGAAGGTGTGGAGGGAA
TTAATTAAAGAATAAAGTCCAACTCTTCAATTGTTGGAGTTTATGGACTG
GAACTTGAAACCAGCTTGGGATTTTACTGAATTTGAGCAAGAAGCTATTC
CTAACGTAGATGCAGTTGATGAGTCAAGTAGCAGGACAAAAGGGAATTTC
TCAGTTGATTTGAAGCTGGGTCAGGTTAATAGTTCGGCTGAAGATTCGTT
GAATAAGTGTAAGGAGCCTGGTGCCTCAAAAATGGAGTCTCCTTCACCTT
CAGGGTCATTCAAGAGGGCCAGAGCAGCTAACAATGGAAGCCAGACTGCG
TCATGTCTTGTTGATGGGTGTGACTCGGACCTTAGTAATTGTAGGGATTA
CCATAGGCCGCATAAGGTGTGTGAGCTCCACTCGAAGACGCCTCAGGTTT
TGATTTGTGGGCAGAAGCAACGGTTCTGTCAGCAATGCAGCAGATTTCAT
TGCCTGGAGGAGTTTGATGAAGGGGAGAGAAACTGCAGGAAACGTCTTGA
AGGGCACAACCAAAAACAAGGAAACCTCAGCCAGATCCCCTGTCCCGACC
GGAACCTTTTTGCCCAATACCAAGGGCCCTCTTATTACCTTTCCCCGTTC
CATTAGTACCCGCCCGCACGGGGGGGAAACCCCCCGGGCTGGAGTTGTAA
AACGGAAGCAAAAGCAGGGGGTAAAAGAGGCTCCACCGTTAAATTG
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