DY259990

Overview
NameDY259990
Unique NameDY259990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1143
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1387 contig Ccv1_Contig1387:1..1143. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 1.295e-93
Identity = 165/207 (79.71%), Postives = 176/207 (85.02%), Query Frame = 3 
Query:   90 PASNL*LSAIGGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLPYYEISAKSNYNFEKPFLYLARKLAGDPNFDFVQSPAPAPPKVQNHFGCPATTMKLNLLPLASTPPPHEND 710
            P+  L +   GGTGKTTFVKRHLTGEF+KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL YYE+SAKSNYNFEKPFLYLARKLAGD N  FV++PA APP V           +  L   A+ P P ++D
Sbjct:   12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAGDGNLHFVETPALAPPDVTIDLAA-QQQHEAELAAAAAQPLPDDDD 217
[Close]
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSI (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2)

HSP 1 Score: 343.584 bits (880), Expect = 1.295e-93
Identity = 165/207 (79.71%), Postives = 176/207 (85.02%), Query Frame = 3 
Query:   90 PASNL*LSAIGGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLPYYEISAKSNYNFEKPFLYLARKLAGDPNFDFVQSPAPAPPKVQNHFGCPATTMKLNLLPLASTPPPHEND 710
            P+  L +   GGTGKTTFVKRHLTGEF+KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL YYE+SAKSNYNFEKPFLYLARKLAGD N  FV++PA APP V           +  L   A+ P P ++D
Sbjct:   12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAGDGNLHFVETPALAPPDVTIDLAA-QQQHEAELAAAAAQPLPDDDD 217
[Close]
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSJ (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 2.442e-92
Identity = 164/207 (79.23%), Postives = 175/207 (84.54%), Query Frame = 3 
Query:   90 PASNL*LSAIGGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLPYYEISAKSNYNFEKPFLYLARKLAGDPNFDFVQSPAPAPPKVQNHFGCPATTMKLNLLPLASTPPPHEND 710
            P+  L +   GGTGKTTFVKRHLTGEF+KKYEPTIGVEVHPLDF TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL YYEISAKSNYNFEKPFLYLARKLAGDPN  FV++ A  PP+V           +  L   A+ P P ++D
Sbjct:   12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVEAVALKPPEVPIDLAM-QQQHEAELAAAAAQPLPDDDD 217
[Close]
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 2.442e-92
Identity = 164/207 (79.23%), Postives = 175/207 (84.54%), Query Frame = 3 
Query:   90 PASNL*LSAIGGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLPYYEISAKSNYNFEKPFLYLARKLAGDPNFDFVQSPAPAPPKVQNHFGCPATTMKLNLLPLASTPPPHEND 710
            P+  L +   GGTGKTTFVKRHLTGEF+KKYEPTIGVEVHPLDF TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL YYEISAKSNYNFEKPFLYLARKLAGDPN  FV++ A  PP+V           +  L   A+ P P ++D
Sbjct:   12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVEAVALKPPEVPIDLAM-QQQHEAELAAAAAQPLPDDDD 217
[Close]
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSJ (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. japonica GN=RAN3 PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 1.754e-82
Identity = 144/179 (80.45%), Postives = 156/179 (87.15%), Query Frame = 3 
Query:   90 PASNL*LSAIGGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLPYYEISAKSNYNFEKPFLYLARKLAGDPNFDFVQSPAPAPPKV 626
            P+  L L   GGTGKTTFVKRH+TGEF+K+YEPTIGVEV PLDF T+ GK+RF CWDTAGQEKFGGLRDGYYIHG CAIIMFDVT+RLTYKNVPTWH+D+CRVC+NIPIVLCGNKVD+KNRQVKAK VTFHRKKNL YYEISAKSNYNFEKPFLYLARKL GD N  FV+  A  P  V
Sbjct:   16 PSFKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCDNIPIVLCGNKVDMKNRQVKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTGDMNLRFVEELALLPADV 194
[Close]
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSI (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. indica GN=RAN3 PE=2 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 1.754e-82
Identity = 144/179 (80.45%), Postives = 156/179 (87.15%), Query Frame = 3 
Query:   90 PASNL*LSAIGGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLPYYEISAKSNYNFEKPFLYLARKLAGDPNFDFVQSPAPAPPKV 626
            P+  L L   GGTGKTTFVKRH+TGEF+K+YEPTIGVEV PLDF T+ GK+RF CWDTAGQEKFGGLRDGYYIHG CAIIMFDVT+RLTYKNVPTWH+D+CRVC+NIPIVLCGNKVD+KNRQVKAK VTFHRKKNL YYEISAKSNYNFEKPFLYLARKL GD N  FV+  A  P  V
Sbjct:   16 PSFKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCDNIPIVLCGNKVDMKNRQVKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTGDMNLRFVEELALLPADV 194
[Close]
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 6.665e-82
Identity = 146/181 (80.66%), Postives = 157/181 (86.74%), Query Frame = 3 
Query:   87 IPASNL*LSAIGGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLPYYEISAKSNYNFEKPFLYLARKLAGDPNFDFVQSPAPAPPKVQ 629
            IP   L L   GGTGKTTFVKRHLTGEF+KKY  T+GVEVHPL F TN G+IRF  WDTAGQEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNL YY+ISAKSNYNFEKPFL+LARKL GDPN +FV  PA APP+VQ
Sbjct:    7 IPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQ 187
[Close]
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: GSP2_YEAST (GTP-binding nuclear protein GSP2/CNR2 OS=Saccharomyces cerevisiae GN=GSP2 PE=1 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 3.308e-81
Identity = 143/181 (79.01%), Postives = 158/181 (87.29%), Query Frame = 3 
Query:   87 IPASNL*LSAIGGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLPYYEISAKSNYNFEKPFLYLARKLAGDPNFDFVQSPAPAPPKVQ 629
            +P   L L   GGTGKTTFVKRHLTGEF+KKY  TIGVEVHPL F+TN G+I+F  WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNL YY+ISAKSNYNFEKPFL+LARKLAG+P  +FV SPA APP+VQ
Sbjct:   11 VPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQ 191
[Close]
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: GSP1_YEAST (GTP-binding nuclear protein GSP1/CNR1 OS=Saccharomyces cerevisiae GN=GSP1 PE=1 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 3.308e-81
Identity = 143/181 (79.01%), Postives = 158/181 (87.29%), Query Frame = 3 
Query:   87 IPASNL*LSAIGGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLPYYEISAKSNYNFEKPFLYLARKLAGDPNFDFVQSPAPAPPKVQ 629
            +P   L L   GGTGKTTFVKRHLTGEF+KKY  TIGVEVHPL F+TN G+I+F  WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNL YY+ISAKSNYNFEKPFL+LARKLAG+P  +FV SPA APP+VQ
Sbjct:   10 VPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQ 190
[Close]
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 5.642e-81
Identity = 143/181 (79.01%), Postives = 157/181 (86.74%), Query Frame = 3 
Query:   87 IPASNL*LSAIGGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLPYYEISAKSNYNFEKPFLYLARKLAGDPNFDFVQSPAPAPPKVQ 629
            +P   L L   GGTGKTTFVKRHLTGEF+KKY  TIGVEVHPL F+TN G+I+F  WDTAGQEKFGGLRDGYYI+ QC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNL YY+ISAKSNYNFEKPFL+LARKLAG+P  DFV SPA APP+VQ
Sbjct:    5 VPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLDFVASPALAPPEVQ 185
The following BLAST results are available for this feature:
BLAST of DY259990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
RAN1_ORYSJ1.295e-9379.71GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN1_ORYSI1.295e-9379.71GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN2_ORYSJ2.442e-9279.23GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN2_ORYSI2.442e-9279.23GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN3_ORYSJ1.754e-8280.45GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN3_ORYSI1.754e-8280.45GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN_CAEEL6.665e-8280.66GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
GSP2_YEAST3.308e-8179.01GTP-binding nuclear protein GSP2/CNR2 OS=Saccharom... [more]
GSP1_YEAST3.308e-8179.01GTP-binding nuclear protein GSP1/CNR1 OS=Saccharom... [more]
GSP1_ASHGO5.642e-8179.01GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259990 ID=DY259990; Name=DY259990; organism=Citrus clementina; type=EST; length=1143bp
CGACACTGACCCCTTTCTCACTTAAATTCAAAATCCCAACGCAACAAATC
CACTCATGGCTCTGCCGAATCAGCGAACTGTTGATTATCCCAGCTTCAAA
CTTGTAATTGTCGGCGATAGGTGGCACTGGGAAGACTACCTTTGTGAAAA
GGCATCTTACTGGTGAATTCAAGAAAAAATATGAACCGACCATTGGTGTG
GAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATACGATTCTA
TTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGAGATGGAT
ACTACATCCATGGGCAATGTGCTATCATCATGTTTGATGTTACTGCCCGC
TTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCAGGGTGTG
TGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGTCGATGTGAAGAACA
GGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCCG
TACTATGAGATCTCAGCCAAGAGCAATTACAACTTTGAAAAGCCTTTTCT
TTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTTTGATTTTGTCCAGT
CCCCTGCCCCTGCTCCCCCAAAGGTGCAAAATCATTTTGGCTGCCCAGCA
ACAACAATGAAACTAAACCTCCTGCCGCTCGCATCCACCCCCCCCCCTCA
TGAAAATGACCACCCCTCCCACTCAAACAAAACATGGCCTCCGGCGATCT
TTGGGACTTAAAAATCCCCATTCGATTGCTCTCAGATATTCGTGAGGGTT
CTTTGCACGCCACCCTTGCATTTTACCTTACCTGACCCCACCACCCACGC
CACCTCCTCCCCACCCCGACTCGTGTCCCCCCCACCCCCCCCCCCCATCC
CCGCCCTCCCTCCTCGCACGCACACCCCGAATCAACCCCTCTCCTTCCAC
AAACATCTTCCCTCCCAACTGTCCCGAACACCCTCTCCTGTCATTCACAT
CCACCCCACTTTAGCTCGCTTCCTCATCACCCACTCCCCCTGCCACTGTT
CCACCACTCTCATATCATTACCATCCCACCCAACTCCTCCCCACCAACAC
CCTCTCCTCTCCTCCTCTCCAAACCTCTTCGCTCCTCGCACTC
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