DY259990

Overview
NameDY259990
Unique NameDY259990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1143
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.154e-15
Identity = 50/145 (34.48%), Postives = 75/145 (51.72%), Query Frame = 3
Query:  123 GTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLPYYEISAKSNYNFEKPF 548
            G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K NL + E SA  + N E+ F
Sbjct:   21 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 165          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 3.154e-15
Identity = 50/145 (34.48%), Postives = 75/145 (51.72%), Query Frame = 3
Query:  123 GTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLPYYEISAKSNYNFEKPF 548
            G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K NL + E SA  + N E+ F
Sbjct:   21 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 165          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.154e-15
Identity = 60/198 (30.30%), Postives = 93/198 (46.97%), Query Frame = 3
Query:  123 GTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLPYYEISAKSNYNFEKPFLYLARKLAGDPNFDFVQSPAPAPPKVQNHFGCPATTMKLN----LLPLASTPP 695
            G GK+  + R    EF  + + TIGVE       T    I+   WDTAGQE++  +   YY     A++++D+  + TYK+V  W  +L    + NI I+L GNK D+++ R+V   +   F  K  L + E SA  + N E  F  +  ++     +  +  P        +H   P TT+  N    +LP  S PP
Sbjct:   23 GVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQI-----YHIMSRP--------SHSTGPQTTIDSNTETIILPTTSEPP 207          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB7_CENCI (Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.154e-15
Identity = 48/152 (31.58%), Postives = 74/152 (48.68%), Query Frame = 3
Query:  123 GTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLPYYEISAKSNYNFEKPF 548
            G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV +  ++ N+  W  +          +N P VL GNKVDV    +R V  K+       K N+PY+E SAK   N E  F
Sbjct:   18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVLLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGTNVEDAF 169          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.119e-15
Identity = 51/150 (34.00%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  129 GKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN-LPYYEISAKSNYNFEKPFLYLARKL 569
            GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+   R V+ ++   + + N L + E SAK+  N  + F+ +A+KL
Sbjct:   33 GKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKL 182          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.119e-15
Identity = 49/150 (32.67%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  129 GKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLPYYEISAKSNYNFEKPFLYLARKL 569
            GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N++    Q   ++    +L + E SAK++ N  + F+ +A+KL
Sbjct:   32 GKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.119e-15
Identity = 49/150 (32.67%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  129 GKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLPYYEISAKSNYNFEKPFLYLARKL 569
            GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N++    Q   ++    +L + E SAK++ N  + F+ +A+KL
Sbjct:   32 GKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.119e-15
Identity = 49/150 (32.67%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  129 GKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLPYYEISAKSNYNFEKPFLYLARKL 569
            GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N++    Q   ++    +L + E SAK++ N  + F+ +A+KL
Sbjct:   32 GKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 4.119e-15
Identity = 49/150 (32.67%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  129 GKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLPYYEISAKSNYNFEKPFLYLARKL 569
            GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N++    Q   ++    +L + E SAK++ N  + F+ +A+KL
Sbjct:   32 GKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.119e-15
Identity = 49/150 (32.67%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  129 GKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLPYYEISAKSNYNFEKPFLYLARKL 569
            GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N++    Q   ++    +L + E SAK++ N  + F+ +A+KL
Sbjct:   32 GKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
The following BLAST results are available for this feature:
BLAST of DY259990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
RB11B_DISOM3.154e-1534.48Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RB11B_BOVIN3.154e-1534.48Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11A_DICDI3.154e-1530.30Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RAB7_CENCI3.154e-1531.58Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2... [more]
RAB5C_BOVIN4.119e-1534.00Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB5A_PIG4.119e-1532.67Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE4.119e-1532.67Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA4.119e-1532.67Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN4.119e-1532.67Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA4.119e-1532.67Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259990 ID=DY259990; Name=DY259990; organism=Citrus clementina; type=EST; length=1143bp
CGACACTGACCCCTTTCTCACTTAAATTCAAAATCCCAACGCAACAAATC
CACTCATGGCTCTGCCGAATCAGCGAACTGTTGATTATCCCAGCTTCAAA
CTTGTAATTGTCGGCGATAGGTGGCACTGGGAAGACTACCTTTGTGAAAA
GGCATCTTACTGGTGAATTCAAGAAAAAATATGAACCGACCATTGGTGTG
GAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATACGATTCTA
TTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGAGATGGAT
ACTACATCCATGGGCAATGTGCTATCATCATGTTTGATGTTACTGCCCGC
TTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCAGGGTGTG
TGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGTCGATGTGAAGAACA
GGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCCG
TACTATGAGATCTCAGCCAAGAGCAATTACAACTTTGAAAAGCCTTTTCT
TTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTTTGATTTTGTCCAGT
CCCCTGCCCCTGCTCCCCCAAAGGTGCAAAATCATTTTGGCTGCCCAGCA
ACAACAATGAAACTAAACCTCCTGCCGCTCGCATCCACCCCCCCCCCTCA
TGAAAATGACCACCCCTCCCACTCAAACAAAACATGGCCTCCGGCGATCT
TTGGGACTTAAAAATCCCCATTCGATTGCTCTCAGATATTCGTGAGGGTT
CTTTGCACGCCACCCTTGCATTTTACCTTACCTGACCCCACCACCCACGC
CACCTCCTCCCCACCCCGACTCGTGTCCCCCCCACCCCCCCCCCCCATCC
CCGCCCTCCCTCCTCGCACGCACACCCCGAATCAACCCCTCTCCTTCCAC
AAACATCTTCCCTCCCAACTGTCCCGAACACCCTCTCCTGTCATTCACAT
CCACCCCACTTTAGCTCGCTTCCTCATCACCCACTCCCCCTGCCACTGTT
CCACCACTCTCATATCATTACCATCCCACCCAACTCCTCCCCACCAACAC
CCTCTCCTCTCCTCCTCTCCAAACCTCTTCGCTCCTCGCACTC
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