DY259990

Overview
NameDY259990
Unique NameDY259990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1143
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1387 contig Ccv1_Contig1387:1..1143. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RALB_HUMAN (Ras-related protein Ral-B OS=Homo sapiens GN=RALB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.039e-11
Identity = 43/155 (27.74%), Postives = 80/155 (51.61%), Query Frame = 3 
Query:  120 GGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDV-KNRQVKAKQVTFHRKK-NLPYYEISAKSNYNFEKPFLYLARKL 569
            GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  +++F +T   ++     +   + RV    + IP+++ GNK D+ + RQV  ++     ++  + Y E SAK+  N +K F  L R++
Sbjct:   23 GGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 176
The following BLAST results are available for this feature:
BLAST of DY259990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
RALB_HUMAN8.039e-1127.74Ras-related protein Ral-B OS=Homo sapiens GN=RALB ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259990 ID=DY259990; Name=DY259990; organism=Citrus clementina; type=EST; length=1143bp
CGACACTGACCCCTTTCTCACTTAAATTCAAAATCCCAACGCAACAAATC
CACTCATGGCTCTGCCGAATCAGCGAACTGTTGATTATCCCAGCTTCAAA
CTTGTAATTGTCGGCGATAGGTGGCACTGGGAAGACTACCTTTGTGAAAA
GGCATCTTACTGGTGAATTCAAGAAAAAATATGAACCGACCATTGGTGTG
GAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATACGATTCTA
TTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGAGATGGAT
ACTACATCCATGGGCAATGTGCTATCATCATGTTTGATGTTACTGCCCGC
TTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCAGGGTGTG
TGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGTCGATGTGAAGAACA
GGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCCG
TACTATGAGATCTCAGCCAAGAGCAATTACAACTTTGAAAAGCCTTTTCT
TTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTTTGATTTTGTCCAGT
CCCCTGCCCCTGCTCCCCCAAAGGTGCAAAATCATTTTGGCTGCCCAGCA
ACAACAATGAAACTAAACCTCCTGCCGCTCGCATCCACCCCCCCCCCTCA
TGAAAATGACCACCCCTCCCACTCAAACAAAACATGGCCTCCGGCGATCT
TTGGGACTTAAAAATCCCCATTCGATTGCTCTCAGATATTCGTGAGGGTT
CTTTGCACGCCACCCTTGCATTTTACCTTACCTGACCCCACCACCCACGC
CACCTCCTCCCCACCCCGACTCGTGTCCCCCCCACCCCCCCCCCCCATCC
CCGCCCTCCCTCCTCGCACGCACACCCCGAATCAACCCCTCTCCTTCCAC
AAACATCTTCCCTCCCAACTGTCCCGAACACCCTCTCCTGTCATTCACAT
CCACCCCACTTTAGCTCGCTTCCTCATCACCCACTCCCCCTGCCACTGTT
CCACCACTCTCATATCATTACCATCCCACCCAACTCCTCCCCACCAACAC
CCTCTCCTCTCCTCCTCTCCAAACCTCTTCGCTCCTCGCACTC
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