DY259990

Overview
NameDY259990
Unique NameDY259990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1143
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1387 contig Ccv1_Contig1387:1..1143. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB9A_HUMAN (Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9A PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.401e-17
Identity = 49/157 (31.21%), Postives = 79/157 (50.32%), Query Frame = 3
Query:  120 GGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LPYYEISAKSNYNFEKPFLYLARKL 569
            GG GK++ + R++T +F  +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK+D+  RQV  ++     + N   PY+E SAK   N    F    R++
Sbjct:   16 GGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB9A_CANFA (Ras-related protein Rab-9A OS=Canis familiaris GN=RAB9A PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 4.401e-17
Identity = 49/157 (31.21%), Postives = 79/157 (50.32%), Query Frame = 3
Query:  120 GGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LPYYEISAKSNYNFEKPFLYLARKL 569
            GG GK++ + R++T +F  +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK+D+  RQV  ++     + N   PY+E SAK   N    F    R++
Sbjct:   16 GGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 7.507e-17
Identity = 54/153 (35.29%), Postives = 79/153 (51.63%), Query Frame = 3
Query:  129 GKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VKNRQVKAKQVTFHRKK-NLPYYEISAKSNYNFEKPFLYLARKLAG 575
            GKT+ + R +  +F   Y+PTIG++      +     +R   WDTAGQE+F  L   Y      AI+++DV+ R T+ N   W  D+ R     N+ IVL GNK D V+ RQV   +     K+  + + E SAK N+N +  F  +A  L G
Sbjct:   21 GKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPG 173          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB9B_PONAB (Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9B PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 7.507e-17
Identity = 51/157 (32.48%), Postives = 80/157 (50.96%), Query Frame = 3
Query:  120 GGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LPYYEISAKSNYNFEKPFLYLARKL 569
            GG GK++ + R++T +F  +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V  R +++N+  W ++          E+ P V+ GNKVD ++RQV  ++      +N   PY E SAK + N    F    R++
Sbjct:   16 GGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQAWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB9B_MOUSE (Ras-related protein Rab-9B OS=Mus musculus GN=Rab9b PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 7.507e-17
Identity = 51/157 (32.48%), Postives = 79/157 (50.32%), Query Frame = 3
Query:  120 GGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLPYYEISAKSNYNFEKPFLYLARKL 569
            GG GK++ + R++T +F  +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V  R +++N+  W ++          ++ P V+ GNKVD ++RQV  +  Q       N PY E SAK + N    F    R++
Sbjct:   16 GGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPDHFPFVVLGNKVDKEDRQVTTEEAQAWCMENGNYPYLETSAKDDTNVTVAFEEAVRQV 172          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB9B_HUMAN (Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9B PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 7.507e-17
Identity = 51/157 (32.48%), Postives = 80/157 (50.96%), Query Frame = 3
Query:  120 GGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LPYYEISAKSNYNFEKPFLYLARKL 569
            GG GK++ + R++T +F  +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V  R +++N+  W ++          E+ P V+ GNKVD ++RQV  ++      +N   PY E SAK + N    F    R++
Sbjct:   16 GGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB23_MOUSE (Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 7.507e-17
Identity = 47/155 (30.32%), Postives = 76/155 (49.03%), Query Frame = 3
Query:  120 GGTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD------VKNRQVKAKQVTFHRKKNLPYYEISAKSNYNFEKPFLYLARK 566
            G  GK++ ++R+  G F K Y+ TIGV+        N   +R   WDTAGQE+F  +   YY   Q  +++F  T R +++ + +W   +     +IP  L  NK+D      +KN + +       ++  L +Y  S K + N  + F YLA K
Sbjct:   18 GAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEG----LAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 168          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: YPTV5_VOLCA (GTP-binding protein yptV5 OS=Volvox carteri GN=YPTV5 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 9.805e-17
Identity = 49/156 (31.41%), Postives = 80/156 (51.28%), Query Frame = 3
Query:  123 GTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV--KNRQVKAKQVT--FHRKKNLPYYEISAKSNYNFEKPFLYLAR 563
            G GKT+ + +++  +F K+Y+ TIG +    +   +  K+    WDTAGQE+F  L   +Y    C +++FDV    ++ ++  W  +          +N P V+ GNK+D    NRQV  K+       K ++PY+E SAK + N E  F  + R
Sbjct:   18 GVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCMLVFDVNNAKSFDDLDNWRDEFIIQAGPSDPDNFPFVVLGNKIDEVGVNRQVTEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITR 173          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: YPT53_YEAST (GTP-binding protein YPT53 OS=Saccharomyces cerevisiae GN=YPT53 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.281e-16
Identity = 56/156 (35.90%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  129 GKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDV-------KNRQVKAKQV-TFHRKKNLPYYEISAKSNYNFEKPFLYLARKL 569
            GK++ V R ++ +FK+  EPTIG          +   I+F  WDTAGQE+F  L   YY + Q A+++FDVT   ++     W  +L  +V  +I I L GNK+D+       +NR +KA  V     ++NL Y+E SAK+  N  + F  L  K+
Sbjct:   24 GKSSIVLRFVSDDFKESKEPTIGAAFLTKRITRDGKVIKFEIWDTAGQERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEELHEKVGHDIVIALVGNKMDLLNNDDENENRAMKAPAVQNLCERENLLYFEASAKTGENIYQIFQTLGEKV 179          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB7_NEUCR (Probable Ras-related protein Rab7 OS=Neurospora crassa GN=17E5.300 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.281e-16
Identity = 48/156 (30.77%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  123 GTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVK--NRQVKAKQ-VTFHRKK-NLPYYEISAKSNYNFEKPFLYLAR 563
            G GKT+ + +++  +F   Y+ TIG +    +   +  ++    WDTAGQE+F  L   +Y    C ++++DV    ++  + +W  +       R  +N P V+ GNK+D++   R +  K+ +TF + K N+PY+E SAK   N E+ F  +AR
Sbjct:   18 GVGKTSLMNQYVNKKFSASYKATIGADFLTREVLVDDRQVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNFPFVVLGNKIDMEESKRVISTKRAMTFCQSKGNIPYFETSAKEAINVEQAFEVIAR 173          
The following BLAST results are available for this feature:
BLAST of DY259990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
RAB9A_HUMAN4.401e-1731.21Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9... [more]
RAB9A_CANFA4.401e-1731.21Ras-related protein Rab-9A OS=Canis familiaris GN=... [more]
RBH1C_ARATH7.507e-1735.29Ras-related protein RABH1C OS=Arabidopsis thaliana... [more]
RAB9B_PONAB7.507e-1732.48Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9... [more]
RAB9B_MOUSE7.507e-1732.48Ras-related protein Rab-9B OS=Mus musculus GN=Rab9... [more]
RAB9B_HUMAN7.507e-1732.48Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9... [more]
RAB23_MOUSE7.507e-1730.32Ras-related protein Rab-23 OS=Mus musculus GN=Rab2... [more]
YPTV5_VOLCA9.805e-1731.41GTP-binding protein yptV5 OS=Volvox carteri GN=YPT... [more]
YPT53_YEAST1.281e-1635.90GTP-binding protein YPT53 OS=Saccharomyces cerevis... [more]
RAB7_NEUCR1.281e-1630.77Probable Ras-related protein Rab7 OS=Neurospora cr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259990 ID=DY259990; Name=DY259990; organism=Citrus clementina; type=EST; length=1143bp
CGACACTGACCCCTTTCTCACTTAAATTCAAAATCCCAACGCAACAAATC
CACTCATGGCTCTGCCGAATCAGCGAACTGTTGATTATCCCAGCTTCAAA
CTTGTAATTGTCGGCGATAGGTGGCACTGGGAAGACTACCTTTGTGAAAA
GGCATCTTACTGGTGAATTCAAGAAAAAATATGAACCGACCATTGGTGTG
GAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATACGATTCTA
TTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGAGATGGAT
ACTACATCCATGGGCAATGTGCTATCATCATGTTTGATGTTACTGCCCGC
TTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCAGGGTGTG
TGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGTCGATGTGAAGAACA
GGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCCG
TACTATGAGATCTCAGCCAAGAGCAATTACAACTTTGAAAAGCCTTTTCT
TTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTTTGATTTTGTCCAGT
CCCCTGCCCCTGCTCCCCCAAAGGTGCAAAATCATTTTGGCTGCCCAGCA
ACAACAATGAAACTAAACCTCCTGCCGCTCGCATCCACCCCCCCCCCTCA
TGAAAATGACCACCCCTCCCACTCAAACAAAACATGGCCTCCGGCGATCT
TTGGGACTTAAAAATCCCCATTCGATTGCTCTCAGATATTCGTGAGGGTT
CTTTGCACGCCACCCTTGCATTTTACCTTACCTGACCCCACCACCCACGC
CACCTCCTCCCCACCCCGACTCGTGTCCCCCCCACCCCCCCCCCCCATCC
CCGCCCTCCCTCCTCGCACGCACACCCCGAATCAACCCCTCTCCTTCCAC
AAACATCTTCCCTCCCAACTGTCCCGAACACCCTCTCCTGTCATTCACAT
CCACCCCACTTTAGCTCGCTTCCTCATCACCCACTCCCCCTGCCACTGTT
CCACCACTCTCATATCATTACCATCCCACCCAACTCCTCCCCACCAACAC
CCTCTCCTCTCCTCCTCTCCAAACCTCTTCGCTCCTCGCACTC
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