DY259990

Overview
NameDY259990
Unique NameDY259990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1143
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1387 contig Ccv1_Contig1387:1..1143. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.281e-16
Identity = 58/171 (33.92%), Postives = 88/171 (51.46%), Query Frame = 3
Query:  129 GKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLPYYEISAKSNYNFEKPFLYLARKLAGDPNFDFVQSPAPAPPKVQN 632
            GKT+ VKR     F +    TIGVE    +   +  K+    WDTAGQEKF  L   YY      I+ +DVT R ++ N+  W  ++       N+  +L GNK+D +NR+V  ++   F +KK + + E SAKS    ++ F  LA+K+   P     Q+ + + PK +N
Sbjct:   18 GKTSIVKRFSDDTFDEDLLCTIGVEFKMKEVKVDGKKVDLCIWDTAGQEKFRALISSYYRGAHGIILTYDVTKRESFDNLNYWLNEVENFANRSNLVKLLVGNKIDKENREVTREEGAEFAKKKAMLFIECSAKSKIGIQQAFEELAQKIIEIP-----QNTSSSQPKQRN 183          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.672e-16
Identity = 59/185 (31.89%), Postives = 89/185 (48.11%), Query Frame = 3
Query:  123 GTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK------NLPYYEISAKSNYNFEKPFLYLARKLAG-----------DPNFDFVQSPAPAPPK 623
            G GK+  + R     + + +  TIGV+        N   I+   WDTAGQE+F  +   YY      I+++DVT +LT++NV  W +++ R  CEN+  +L GNK D+    V  K V F+  K       +P+ E SAK + N E+ F+ +A ++             D N     S AP  PK
Sbjct:   18 GVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDL----VAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQTVDKNKVVPGSSAPISPK 198          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: YPTC5_CHLRE (GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.853e-16
Identity = 47/157 (29.94%), Postives = 80/157 (50.96%), Query Frame = 3
Query:  123 GTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLPYYEISAKSNYNFEKPFLYLAR 563
            G GKT+ + +++  +F K+Y+ TIG +    +   +  K+    WDTAGQE+F  L   +Y    C +++FDV    ++ ++  W  +          +N P ++ GNK+D     +RQV  K+       K ++PY+E SAK + N E  F  + R
Sbjct:   18 GVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCVLVFDVNNAKSFDDLDNWRDEFIIQAGPPDPDNFPFMVLGNKIDENGGSSRQVSEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITR 174          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB7_ARATH (Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.853e-16
Identity = 51/172 (29.65%), Postives = 88/172 (51.16%), Query Frame = 3
Query:  123 GTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVCEN----IPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLPYYEISAKSNYNFEKPFLYLAR-KLAGDPNFDFVQSP 605
            G GKT+ + +++  +F ++Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C ++++DV    +++++  WH + L R         P +L GNKVD+    +R V  K+       K N+ Y+E SAK +YN +  FL + +  LA + + D    P
Sbjct:   18 GVGKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPFILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSFLCITKLALANERDQDIYFQP 189          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.853e-16
Identity = 58/197 (29.44%), Postives = 97/197 (49.24%), Query Frame = 3
Query:  129 GKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN--LPYYEISAKSNYNFEKPFLYLARKLAGDPNFDFVQSPAPAPPKVQNHFGCPATTMKLNLLPLASTPPPHEN 707
            GKT  V R  +G F    + TIGV+        N  K++   WDTAGQE+F  +   YY     AII +D+T R ++++VP W  +  +    N+ ++L GNK D+ + RQ+  ++     +K+  L   E SAK ++N ++ FL +A++L     F +             H   P  +  L+  P+ + P P ++
Sbjct:   27 GKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAGKYGAANLMLMLMGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKELIARNTFHY-------------HNESPRNSFILDSKPVLAPPEPDKS 210          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RB27B_BOVIN (Ras-related protein Rab-27B OS=Bos taurus GN=RAB27B PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 3.726e-16
Identity = 55/161 (34.16%), Postives = 82/161 (50.93%), Query Frame = 3
Query:  108 LSAIG--GTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLPYYEISAKSNYNFEK 542
            L A+G  G GKTTF+ R+   +F  K+  T+G++        N            K+    WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IVL GNK D+ + R+V  +Q      K ++PY+E SA +  N EK
Sbjct:   12 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVAYNTQGPNGPTGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARDLAEKYSIPYFETSAATGQNVEK 172          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RB27B_HUMAN (Ras-related protein Rab-27B OS=Homo sapiens GN=RAB27B PE=1 SV=4)

HSP 1 Score: 85.8853 bits (211), Expect = 4.866e-16
Identity = 55/161 (34.16%), Postives = 81/161 (50.31%), Query Frame = 3
Query:  108 LSAIG--GTGKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLPYYEISAKSNYNFEK 542
            L A+G  G GKTTF+ R+   +F  K+  T+G++        N            K+    WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IVL GNK D+ + R+V  +Q      K  +PY+E SA +  N EK
Sbjct:   12 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 172          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.866e-16
Identity = 53/150 (35.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  129 GKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LPYYEISAKSNYNFEKPFLYLARKL 569
            GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+ N R V+ ++   +   N L + E SAK+  N    FL +A+KL
Sbjct:   32 GKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.866e-16
Identity = 53/150 (35.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  129 GKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LPYYEISAKSNYNFEKPFLYLARKL 569
            GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+ N R V+ ++   +   N L + E SAK+  N    FL +A+KL
Sbjct:   32 GKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181          
BLAST of DY259990 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.866e-16
Identity = 53/150 (35.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  129 GKTTFVKRHLTGEFKKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LPYYEISAKSNYNFEKPFLYLARKL 569
            GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+ N R V+ ++   +   N L + E SAK+  N    FL +A+KL
Sbjct:   32 GKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181          
The following BLAST results are available for this feature:
BLAST of DY259990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
RAB18_DICDI1.281e-1633.92Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]
RAB1A_DICDI1.672e-1631.89Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
YPTC5_CHLRE2.853e-1629.94GTP-binding protein YPTC5 OS=Chlamydomonas reinhar... [more]
RAB7_ARATH2.853e-1629.65Ras-related protein Rab7 OS=Arabidopsis thaliana G... [more]
RAB19_XENLA2.853e-1629.44Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]
RB27B_BOVIN3.726e-1634.16Ras-related protein Rab-27B OS=Bos taurus GN=RAB27... [more]
RB27B_HUMAN4.866e-1634.16Ras-related protein Rab-27B OS=Homo sapiens GN=RAB... [more]
RAB5B_PONAB4.866e-1635.33Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE4.866e-1635.33Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]
RAB5B_HUMAN4.866e-1635.33Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259990 ID=DY259990; Name=DY259990; organism=Citrus clementina; type=EST; length=1143bp
CGACACTGACCCCTTTCTCACTTAAATTCAAAATCCCAACGCAACAAATC
CACTCATGGCTCTGCCGAATCAGCGAACTGTTGATTATCCCAGCTTCAAA
CTTGTAATTGTCGGCGATAGGTGGCACTGGGAAGACTACCTTTGTGAAAA
GGCATCTTACTGGTGAATTCAAGAAAAAATATGAACCGACCATTGGTGTG
GAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATACGATTCTA
TTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGAGATGGAT
ACTACATCCATGGGCAATGTGCTATCATCATGTTTGATGTTACTGCCCGC
TTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCAGGGTGTG
TGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGTCGATGTGAAGAACA
GGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCCG
TACTATGAGATCTCAGCCAAGAGCAATTACAACTTTGAAAAGCCTTTTCT
TTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTTTGATTTTGTCCAGT
CCCCTGCCCCTGCTCCCCCAAAGGTGCAAAATCATTTTGGCTGCCCAGCA
ACAACAATGAAACTAAACCTCCTGCCGCTCGCATCCACCCCCCCCCCTCA
TGAAAATGACCACCCCTCCCACTCAAACAAAACATGGCCTCCGGCGATCT
TTGGGACTTAAAAATCCCCATTCGATTGCTCTCAGATATTCGTGAGGGTT
CTTTGCACGCCACCCTTGCATTTTACCTTACCTGACCCCACCACCCACGC
CACCTCCTCCCCACCCCGACTCGTGTCCCCCCCACCCCCCCCCCCCATCC
CCGCCCTCCCTCCTCGCACGCACACCCCGAATCAACCCCTCTCCTTCCAC
AAACATCTTCCCTCCCAACTGTCCCGAACACCCTCTCCTGTCATTCACAT
CCACCCCACTTTAGCTCGCTTCCTCATCACCCACTCCCCCTGCCACTGTT
CCACCACTCTCATATCATTACCATCCCACCCAACTCCTCCCCACCAACAC
CCTCTCCTCTCCTCCTCTCCAAACCTCTTCGCTCCTCGCACTC
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