DY259991

Overview
NameDY259991
Unique NameDY259991
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length917
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_RHISN (Imidazoleglycerol-phosphate dehydratase OS=Rhizobium sp. (strain NGR234) GN=hisB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.206e-41
Identity = 76/172 (44.19%), Postives = 114/172 (66.28%), Query Frame = 3
Query:  300 VDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKA 815
            V   R G+V R T ET VSV +N+DG+GV+  +T + F DHMLDQLA H L D+ ++  GD+H+DDHHT ED G+AIG A+ +ALGDR+GI R+      +DE +   ++D+SGRP L +++   + K+GT++T+LV   FQ+L   +G+   +Q + G N+ H+ E   K+
Sbjct:    4 VTLSRTGQVSRKTNETAVSVSVNIDGTGVSKIATGVGFFDHMLDQLARHSLIDMEIKTEGDLHVDDHHTVEDTGIAIGQAIAKALGDRRGITRYASLDLAMDETMTRAAVDVSGRPFLVWNVTFSSPKIGTFDTELVREFFQALAQHAGITLHVQNIYGANNHHVAETCFKS 175          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_GEOLS (Imidazoleglycerol-phosphate dehydratase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=hisB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.206e-41
Identity = 81/169 (47.93%), Postives = 110/169 (65.09%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R  E+ R T ET + +K+ +DG+G++   T +PFLDHML   A HGLFD+ V A GDI ID HHT ED+G+ +G A  QALGD+KGI R+G    P+DE L  V++DLSGRP+L Y++ +P  KVG ++ +L    FQ+  N  G +  +  L G+N  HIIEA  K F
Sbjct:    3 RTAEIDRSTSETRIHLKLTIDGTGLSAIRTTVPFLDHMLHLFARHGLFDLTVEAQGDIDIDFHHTVEDIGIVLGEAFRQALGDKKGIVRYGTARIPMDETLADVTVDLSGRPYLVYNVDLPKVKVGEFDAELAREFFQAFANNCGCNLHLNLLYGENVHHIIEACFKGF 171          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_DECAR (Imidazoleglycerol-phosphate dehydratase OS=Dechloromonas aromatica (strain RCB) GN=hisB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.206e-41
Identity = 82/169 (48.52%), Postives = 109/169 (64.50%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R  E+ R T ET ++V++N+DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD+HID HHT ED+G+  G AL +A GD+KG+ R+G    PLDEAL  V +DLSGRP L   ++     +GT++  LV   F  LVN +GM   I  L GKN+ H  E   KAF
Sbjct:    2 RQAEITRNTLETQITVRLNLDGTGQGKYATGVPFLDHMLDQIARHGLIDLDIEAKGDLHIDAHHTVEDIGITFGQALAKAWGDKKGLTRYGHSYVPLDEALSRVVIDLSGRPGLELHVEFTRAVIGTFDVDLVGEFFHGLVNHAGMTLHIDNLRGKNAHHQAETIFKAF 170          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_GEOSF (Imidazoleglycerol-phosphate dehydratase OS=Geobacter sp. (strain FRC-32) GN=hisB PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.187e-41
Identity = 78/164 (47.56%), Postives = 112/164 (68.29%), Query Frame = 3
Query:  324 VKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKA 815
            V+R+TKET + + +++DG+G A   T +PFLDHML+  A HGLF++ V A GDI ID HHT ED+G+ +G AL QALGD+ GI R+G  + P+DE L  V++DLSGRP+L Y++++P  K+G ++ +L    FQ+L N    +  I  + G N  HI+EA  KA
Sbjct:    7 VERITKETQIKLSLDIDGAGEAKVCTSVPFLDHMLNLFARHGLFNLEVEAKGDIDIDFHHTVEDIGIVLGEALKQALGDKSGIRRYGQASVPMDETLASVAVDLSGRPYLAYNVRLPKVKIGDFDVELAREFFQALTNNLAANIHINVMYGDNVHHILEACFKA 170          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_NITEU (Imidazoleglycerol-phosphate dehydratase OS=Nitrosomonas europaea GN=hisB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.076e-41
Identity = 78/169 (46.15%), Postives = 110/169 (65.09%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R  +V R T+ET ++V IN+DG G A+  + +PFLDHMLDQ+A HG+FD+ V A GD+H+D HHT ED+G+ +G AL +A+ D+KG+ R+G    PLDEAL  V +DLSGRP L ++       +G ++  L++  FQ  VN + +   I  L GKN+ H  E   KAF
Sbjct:    4 RTAQVTRNTQETQITVTINLDGQGKAELDSGVPFLDHMLDQIARHGMFDLSVAAKGDLHVDAHHTVEDIGITLGQALNRAVADKKGLVRYGHAYVPLDEALSRVVIDLSGRPGLQFNTTFTRAVIGNFDVDLIQEFFQGFVNHAMVTLHIDNLTGKNAHHQAETIFKAF 172          

HSP 2 Score: 25.409 bits (54), Expect = 5.076e-41
Identity = 13/26 (50.00%), Postives = 14/26 (53.85%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A    PR    IP+ KG
Sbjct:  170 KAFGRALRMAVTTDPRCDNLIPSTKG 195          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_SYMTH (Imidazoleglycerol-phosphate dehydratase OS=Symbiobacterium thermophilum GN=hisB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.468e-41
Identity = 79/169 (46.75%), Postives = 114/169 (67.46%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+G+V R T+ET+++V   +DG+G AD  T +PF DHMLDQ+A H L D+  RA GD+ ID HHT ED G+A+G AL +ALGD + I R+G    P DE L   ++D+SGRP+L +D  +P QKVG ++T+L E  F++L   +G+   ++   G+N+ H+IE   KAF
Sbjct:   15 RVGQVARKTRETDIAVTWRLDGAGRADVDTGVPFFDHMLDQIARHSLTDLTARAVGDLEIDAHHTVEDTGIALGQALRRALGDGRSIRRYGSAFVPFDETLAFAAVDVSGRPYLVFDAALPAQKVGNFDTELAEEFFRALAMNAGITLHLKVHYGRNTHHMIEGLFKAF 183          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_CELJU (Imidazoleglycerol-phosphate dehydratase OS=Cellvibrio japonicus (strain Ueda107) GN=hisB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.468e-41
Identity = 80/171 (46.78%), Postives = 112/171 (65.50%), Query Frame = 3
Query:  306 SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            S RI +V R T ET +SV +N+DG+G    +T +PFL+HM+DQ+A HG+ D+ V   GD HIDDHH+ ED+G+ IG A+ +A+GD+KGI R+G    PLDEAL  V +D SGRP L  D+    +++G ++T+L    FQ  VN +G+   +  L G N+ H IE   KAF
Sbjct:    2 SDRIAQVTRNTLETKISVSLNLDGAGKGVFNTGVPFLEHMMDQIARHGMIDLDVTCDGDTHIDDHHSVEDIGITIGQAIAKAVGDKKGIRRYGHAYVPLDEALSRVVIDFSGRPGLVMDIPFTQKRIGQFDTELFWEFFQGFVNHAGVTLHVDNLRGHNAHHQIETVFKAF 172          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_RHORT (Imidazoleglycerol-phosphate dehydratase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=hisB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.617e-41
Identity = 80/168 (47.62%), Postives = 111/168 (66.07%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKA 815
            R   V R TKET ++V +++DG+G  + ST I FLDHML+Q++ H L D+ V A GD HID HHT ED GLAIG A+ QALGDRKGI R+G    P+DEAL  V++DLS RP+L + +     K+G  +T+L +  FQ+   T+G+   +    G+N+ HI+E+  KA
Sbjct:    2 RQATVTRATKETEITVWLDLDGTGQYEVSTGIGFLDHMLEQVSRHSLMDLRVHAKGDTHIDFHHTTEDTGLAIGQAVTQALGDRKGIQRYGSALIPMDEALTQVAVDLSNRPYLIWKVDFSRDKLGDMDTELFKEWFQAFSQTAGVTLHVANHYGENNHHIVESCYKA 169          

HSP 2 Score: 28.4906 bits (62), Expect = 8.617e-41
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K  ARALR+A ++ PR+   +P+ KG
Sbjct:  168 KALARALRQAWEIDPRKADAVPSTKG 193          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_STRGG (Imidazoleglycerol-phosphate dehydratase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=hisB PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 9.327e-41
Identity = 85/171 (49.71%), Postives = 116/171 (67.84%), Query Frame = 3
Query:  306 SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHL-NYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKA 815
            S R+G V+R TKET+V V+IN+DG+G  D +T + F DHMLDQL  HGLFD+ V+  GD+HID HHT ED  LA+G A  QALGD+ GI RFG+ T PLDE+L  V++DLSGRP+L + + +     +GTY+T +   +F+S V  + +   I    G+N+ HI+E   KA
Sbjct:    2 SPRVGRVERTTKETSVLVEINLDGTGKVDVATGVGFYDHMLDQLGRHGLFDLTVKTEGDLHIDTHHTIEDTALALGAAFKQALGDKVGIYRFGNCTVPLDESLAQVTVDLSGRPYLVHTEPENMAPMIGTYDTTMTRHIFESFVAQAQIALHIHVPYGRNAHHIVECQFKA 172          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_MARAV (Imidazoleglycerol-phosphate dehydratase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=hisB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.218e-40
Identity = 83/169 (49.11%), Postives = 109/169 (64.50%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R   V+R T ET ++V+IN+DG+G A+  T +PFL+HM+DQ+A HGL D+ +   GD+HIDDHHT ED+G+ +G A  QA+GD+KGI R+G    PLDEAL  V +DLSGRP L  D+      VG ++  L    FQ  VN S +   I  L GKN+ H IE   KAF
Sbjct:    4 RKARVERNTLETQITVEINLDGTGKANFDTGVPFLEHMMDQIARHGLVDLDITCKGDLHIDDHHTVEDIGITLGQAFKQAVGDKKGIRRYGHAYVPLDEALSRVVIDLSGRPGLLMDVPYTRASVGGFDVDLFAEFFQGFVNHSMVTLHIDNLKGKNTHHQIETVFKAF 172          
The following BLAST results are available for this feature:
BLAST of DY259991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS7_RHISN3.206e-4144.19Imidazoleglycerol-phosphate dehydratase OS=Rhizobi... [more]
HIS7_GEOLS3.206e-4147.93Imidazoleglycerol-phosphate dehydratase OS=Geobact... [more]
HIS7_DECAR3.206e-4148.52Imidazoleglycerol-phosphate dehydratase OS=Dechlor... [more]
HIS7_GEOSF4.187e-4147.56Imidazoleglycerol-phosphate dehydratase OS=Geobact... [more]
HIS7_NITEU5.076e-4146.15Imidazoleglycerol-phosphate dehydratase OS=Nitroso... [more]
HIS7_SYMTH5.468e-4146.75Imidazoleglycerol-phosphate dehydratase OS=Symbiob... [more]
HIS7_CELJU5.468e-4146.78Imidazoleglycerol-phosphate dehydratase OS=Cellvib... [more]
HIS7_RHORT8.617e-4147.62Imidazoleglycerol-phosphate dehydratase OS=Rhodosp... [more]
HIS7_STRGG9.327e-4149.71Imidazoleglycerol-phosphate dehydratase OS=Strepto... [more]
HIS7_MARAV1.218e-4049.11Imidazoleglycerol-phosphate dehydratase OS=Marinob... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259991 ID=DY259991; Name=DY259991; organism=Citrus clementina; type=EST; length=917bp
GCTGCGTTTTGGCATATAGCCGTGTTGGCGTTGCTACTCTCTCTGCGACA
TTGGAAACGATAGTGTGTAAAATGGAGCTCTCGGTCCCAGCTCGCCTTGT
TCACCTTTCAATCTCGTCCACGTCCTCACGCCGGCTCCTCGTTAAACCAA
AAACCAATCTCTCTCGTAAACTTCTCCCCATCTCCACACAATACTGCTCC
TCAACGCGCCGCATGAACTCCCTCACAACACCACGCGCCTCTCTAAACCC
AGACGGCGACAGCAAACACAACAACGGGTCCGCCTCAACTTCCTCTGCCG
TCGATTCTGGTCGAATTGGGGAAGTGAAAAGAGTCACGAAAGAGACCAAC
GTTTCTGTGAAGATTAACGTCGATGGCTCTGGCGTTGCTGATTCATCCAC
TTGCATTCCCTTCCTAGATCACATGCTTGATCAACTGGCTTCGCACGGGC
TATTTGATGTGCACGTGAGGGCAACCGGAGACATTCACATTGATGATCAT
CATACCAATGAAGACGTTGGGCTTGCCATTGGCACGGCATTGCTGCAAGC
TCTTGGTGATAGGAAAGGAATTAATCGGTTTGGTGATTTTACAGCTCCTC
TTGATGAAGCTTTGATTCATGTTTCATTGGATTTATCTGGACGGCCACAT
TTAAATTATGATTTGCAAATTCCCACACAGAAAGTTGGAACTTACAACAC
TCAATTGGTGGAACCACTTTTCCAATCCTTGGTGAACACTTCTGGGATGG
ACCCTTCCATTCAACAGCTTGCTGGAAAAAATTCCTCTCACATTATTGAG
GCAACCCTCAAAGCTTTTTGCTAGGGCTCTCCGAAAAGCAACAAAATTAG
GACCCCGTCGCCGTGGAAATATACCCAACCTCAAAGGGGGTTCTCCAACA
TCTTGGAATCTCGACGG
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