DY259991

Overview
NameDY259991
Unique NameDY259991
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length917
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1388 contig Ccv1_Contig1388:1..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_RHOS4 (Imidazoleglycerol-phosphate dehydratase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=hisB PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 4.799e-45
Identity = 82/168 (48.81%), Postives = 116/168 (69.05%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKA 815
            R  E+ R T ET++SV +++DG+G  D  T + F DHM+DQLA H L D+ +R  GD+HIDDHHT ED G+A+G AL +ALGD++GI R+G F   +D+AL+  +LDLSGRP L ++L  PT+K+G+++T+LV   FQ+L    G+   +  + G NS HI EA  KA
Sbjct:    2 RKAEISRKTAETDISVTVDLDGTGRYDIRTGVGFFDHMMDQLARHALIDITLRCEGDLHIDDHHTVEDCGIALGQALTRALGDKRGIRRYGSFHLAMDDALVRAALDLSGRPFLVWNLPFPTEKIGSFDTELVREFFQALATHGGITLHVDLIHGVNSHHIAEAAFKA 169          

HSP 2 Score: 27.335 bits (59), Expect = 4.799e-45
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K  AR+LR+A +  PRR   IP+ KG
Sbjct:  168 KAVARSLREAVEPDPRRADAIPSTKG 193          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURP8 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=hisB PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.151e-45
Identity = 83/169 (49.11%), Postives = 110/169 (65.09%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ EV R T ET + VKIN+DGSG    +T +PFLDHMLDQ+A HGL D+ + A GD HIDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RLAEVVRNTSETQIRVKINLDGSGQQKLATGVPFLDHMLDQIARHGLIDLDIEAHGDTHIDDHHTVEDVGITLGQAIAKAVGDKKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGLNAHHQMETVFKAF 170          

HSP 2 Score: 31.5722 bits (70), Expect = 8.151e-45
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR AT+L  R  G IP+ KG
Sbjct:  168 KAFGRALRMATELDERAAGQIPSTKG 193          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_RHOS1 (Imidazoleglycerol-phosphate dehydratase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=hisB PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.384e-44
Identity = 81/168 (48.21%), Postives = 115/168 (68.45%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKA 815
            R  E+ R T ET++SV +++DG+G  D  T + F DHM+DQLA H L D+ +R  GD+HIDDHHT ED G+A+G AL +ALGD++GI R+G F   +D+AL+  +LDLSGRP L ++L  PT+K+G+++T+LV   FQ+     G+   +  + G NS HI EA  KA
Sbjct:    2 RKAEISRKTAETDISVTVDLDGTGRYDIRTGVGFFDHMMDQLARHALIDITLRCEGDLHIDDHHTVEDCGIALGQALTRALGDKRGIRRYGSFHLAMDDALVRAALDLSGRPFLVWNLPFPTEKIGSFDTELVREFFQAFATHGGITLHVDLIHGVNSHHIAEAAFKA 169          

HSP 2 Score: 27.335 bits (59), Expect = 1.384e-44
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K  AR+LR+A +  PRR   IP+ KG
Sbjct:  168 KAVARSLREAVEPDPRRADAIPSTKG 193          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_POLNA (Imidazoleglycerol-phosphate dehydratase OS=Polaromonas naphthalenivorans (strain CJ2) GN=hisB PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.060e-44
Identity = 84/180 (46.67%), Postives = 118/180 (65.56%), Query Frame = 3
Query:  279 SASTSSAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            + ST++++ + R  EV R T ET ++VK+N+DG+G A  ST I F DHMLDQ+A HGL D+ + A GD+HID HHT EDVG+ +G A+ QA+GD+KG+ R+G    PLDEAL  V +D SGRP L  ++   +  +GT+++QL    FQ  VN + +   I  L G+N+ H  E   KAF
Sbjct:    2 TTSTAASLPAPRTAEVSRNTAETKITVKLNLDGTGQASLSTGIGFFDHMLDQIARHGLIDLDIHAVGDLHIDGHHTVEDVGITLGQAVAQAVGDKKGLRRYGHAYVPLDEALSRVVVDFSGRPGLVMNVPFKSGMIGTFDSQLAYEFFQGFVNHAFVTLHIDNLKGENAHHQAETVFKAF 181          

HSP 2 Score: 29.6462 bits (65), Expect = 3.060e-44
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K FARALR A ++ PR    IP+ KG
Sbjct:  179 KAFARALRMALEIDPRAANVIPSTKG 204          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURS3 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia sp. (strain 383) GN=hisB PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.064e-44
Identity = 83/169 (49.11%), Postives = 110/169 (65.09%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ EV R T ET + VK+N+DG+G    +T +PFLDHMLDQ+A HGL D+ V A GD HIDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RVAEVVRNTSETQIRVKLNLDGTGQQKLATGVPFLDHMLDQIARHGLVDLEVEAHGDTHIDDHHTVEDVGITLGQAVAKAIGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGINAHHQLETVFKAF 170          

HSP 2 Score: 29.6462 bits (65), Expect = 3.064e-44
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L  R  G IP+ KG
Sbjct:  168 KAFGRALRAAVELDERAAGQIPSTKG 193          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_GEOSL (Imidazoleglycerol-phosphate dehydratase OS=Geobacter sulfurreducens GN=hisB PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.046e-44
Identity = 83/169 (49.11%), Postives = 116/169 (68.64%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R   ++RVTKET + + + +DG+G A   T +PFLDHMLD  A HGLF++ V ATGDI ID HHT ED+G+ +G AL +ALGD+KGI R+G  T P+DE L  V++D+SGRP+L Y + +P  K+G ++ +LV   FQ++VN  G +  +  + G N  HI+EA  KAF
Sbjct:    3 RKATIERVTKETQIKLSLEIDGTGEAKICTSVPFLDHMLDLFARHGLFNLQVDATGDIDIDFHHTVEDIGIVLGQALKEALGDKKGIRRYGQATVPMDETLASVAVDISGRPYLVYHVSLPKVKIGEFDVELVREFFQAVVNNLGANIHVNVMYGDNVHHIVEACFKAF 171          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_ROSDO (Imidazoleglycerol-phosphate dehydratase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=hisB PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 5.203e-44
Identity = 82/168 (48.81%), Postives = 114/168 (67.86%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKA 815
            R   + R T ET++ V + +DG+G  D+ T + F DHMLDQLA H L D+ VRA GD+H+DDHHT ED G+A+G AL  ALGD++GI R+G    P+D+AL+  +LDLS RP+L +++ +PT K+GT++T+LV   F +L    G+   I  L G NS HI EAT K+
Sbjct:    2 RSHSITRSTAETDIEVSVQLDGTGRYDNQTGVGFFDHMLDQLARHSLIDLSVRAKGDLHVDDHHTVEDTGIALGQALAGALGDKRGIVRYGSCLLPMDDALVRCALDLSARPYLIWNVDMPTAKIGTFDTELVREFFTALATHGGITLHIDLLHGINSHHIAEATFKS 169          

HSP 2 Score: 27.7202 bits (60), Expect = 5.203e-44
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K  ARALR+A +  PR+   IP+ KG
Sbjct:  168 KSVARALRQAVETDPRKSDAIPSTKG 193          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURP1 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia pseudomallei (strain 1710b) GN=hisB PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.203e-44
Identity = 82/169 (48.52%), Postives = 111/169 (65.68%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD HIDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEANGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAF 170          

HSP 2 Score: 29.6462 bits (65), Expect = 5.203e-44
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L  R  G IP+ KG
Sbjct:  168 KAFGRALRMAVELDERAAGQIPSTKG 193          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_RALEH (Imidazoleglycerol-phosphate dehydratase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hisB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.781e-44
Identity = 81/169 (47.93%), Postives = 109/169 (64.50%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ EV R T ET + V +N+DGSG    ++ +PFLDHMLDQ+A HG+FD+ V ATGD HIDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDE L  V +D SGRP L + +     +VG+++  L    F+  VN +G+   I  L G N+ H  E   KAF
Sbjct:    2 RVAEVTRNTSETQIRVSLNLDGSGRQKLASGVPFLDHMLDQIARHGMFDLEVEATGDTHIDDHHTVEDVGITLGQAVARAIGDKKGITRYGHSYVPLDECLSRVVIDFSGRPGLEFHVPFTRARVGSFDVDLTIEFFRGFVNHAGVTLHIDNLRGINAHHQCETVFKAF 170          

HSP 2 Score: 30.4166 bits (67), Expect = 6.781e-44
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L PR    IP+ KG
Sbjct:  168 KAFGRALRMAVELDPRAANTIPSTKG 193          
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_CUPTR (Imidazoleglycerol-phosphate dehydratase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=hisB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.781e-44
Identity = 81/169 (47.93%), Postives = 109/169 (64.50%), Query Frame = 3
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ EV R T ET + V +N+DGSG    ++ +PFLDHMLDQ+A HG+FD+ V ATGD HIDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDE L  V +D SGRP L + +     +VG+++  L    F+  VN +G+   I  L G N+ H  E   KAF
Sbjct:    2 RVAEVTRNTSETQIRVSLNLDGSGRQKLASGVPFLDHMLDQIARHGMFDLEVEATGDTHIDDHHTVEDVGITLGQAVARAIGDKKGITRYGHSYVPLDECLSRVVIDFSGRPGLEFHVPFTRARVGSFDVDLTIEFFRGFVNHAGVTLHIDNLRGINAHHQCETVFKAF 170          

HSP 2 Score: 30.4166 bits (67), Expect = 6.781e-44
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L PR    IP+ KG
Sbjct:  168 KAFGRALRMAVELDPRAANTIPSTKG 193          
The following BLAST results are available for this feature:
BLAST of DY259991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS7_RHOS44.799e-4548.81Imidazoleglycerol-phosphate dehydratase OS=Rhodoba... [more]
HIS7_BURP88.151e-4549.11Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_RHOS11.384e-4448.21Imidazoleglycerol-phosphate dehydratase OS=Rhodoba... [more]
HIS7_POLNA3.060e-4446.67Imidazoleglycerol-phosphate dehydratase OS=Polarom... [more]
HIS7_BURS33.064e-4449.11Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_GEOSL4.046e-4449.11Imidazoleglycerol-phosphate dehydratase OS=Geobact... [more]
HIS7_ROSDO5.203e-4448.81Imidazoleglycerol-phosphate dehydratase OS=Roseoba... [more]
HIS7_BURP15.203e-4448.52Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_RALEH6.781e-4447.93Imidazoleglycerol-phosphate dehydratase OS=Ralston... [more]
HIS7_CUPTR6.781e-4447.93Imidazoleglycerol-phosphate dehydratase OS=Cupriav... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259991 ID=DY259991; Name=DY259991; organism=Citrus clementina; type=EST; length=917bp
GCTGCGTTTTGGCATATAGCCGTGTTGGCGTTGCTACTCTCTCTGCGACA
TTGGAAACGATAGTGTGTAAAATGGAGCTCTCGGTCCCAGCTCGCCTTGT
TCACCTTTCAATCTCGTCCACGTCCTCACGCCGGCTCCTCGTTAAACCAA
AAACCAATCTCTCTCGTAAACTTCTCCCCATCTCCACACAATACTGCTCC
TCAACGCGCCGCATGAACTCCCTCACAACACCACGCGCCTCTCTAAACCC
AGACGGCGACAGCAAACACAACAACGGGTCCGCCTCAACTTCCTCTGCCG
TCGATTCTGGTCGAATTGGGGAAGTGAAAAGAGTCACGAAAGAGACCAAC
GTTTCTGTGAAGATTAACGTCGATGGCTCTGGCGTTGCTGATTCATCCAC
TTGCATTCCCTTCCTAGATCACATGCTTGATCAACTGGCTTCGCACGGGC
TATTTGATGTGCACGTGAGGGCAACCGGAGACATTCACATTGATGATCAT
CATACCAATGAAGACGTTGGGCTTGCCATTGGCACGGCATTGCTGCAAGC
TCTTGGTGATAGGAAAGGAATTAATCGGTTTGGTGATTTTACAGCTCCTC
TTGATGAAGCTTTGATTCATGTTTCATTGGATTTATCTGGACGGCCACAT
TTAAATTATGATTTGCAAATTCCCACACAGAAAGTTGGAACTTACAACAC
TCAATTGGTGGAACCACTTTTCCAATCCTTGGTGAACACTTCTGGGATGG
ACCCTTCCATTCAACAGCTTGCTGGAAAAAATTCCTCTCACATTATTGAG
GCAACCCTCAAAGCTTTTTGCTAGGGCTCTCCGAAAAGCAACAAAATTAG
GACCCCGTCGCCGTGGAAATATACCCAACCTCAAAGGGGGTTCTCCAACA
TCTTGGAATCTCGACGG
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