DY259991 | Citrus Genome Database

Overview


Name	DY259991
Unique Name	DY259991
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	917

Libraries


Library Name	Type
Fruit-TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig1388	contig	Ccv1_Contig1388:1..916.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURPS (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia pseudomallei GN=hisB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.837e-44
Identity = 82/169 (48.52%), Postives = 111/169 (65.68%), Query Frame = 3

Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD HIDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEAHGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAF 170

HSP 2 Score: 29.6462 bits (65), Expect = 8.837e-44
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L  R  G IP+ KG
Sbjct:  168 KAFGRALRMAVELDERAAGQIPSTKG 193

BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURP6 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia pseudomallei (strain 668) GN=hisB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.837e-44
Identity = 82/169 (48.52%), Postives = 111/169 (65.68%), Query Frame = 3

Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD HIDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEAHGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAF 170

HSP 2 Score: 29.6462 bits (65), Expect = 8.837e-44
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L  R  G IP+ KG
Sbjct:  168 KAFGRALRMAVELDERAAGQIPSTKG 193

BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURP0 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia pseudomallei (strain 1106a) GN=hisB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.837e-44
Identity = 82/169 (48.52%), Postives = 111/169 (65.68%), Query Frame = 3

Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD HIDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEAHGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAF 170

HSP 2 Score: 29.6462 bits (65), Expect = 8.837e-44
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L  R  G IP+ KG
Sbjct:  168 KAFGRALRMAVELDERAAGQIPSTKG 193

BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURMS (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia mallei (strain SAVP1) GN=hisB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.837e-44
Identity = 82/169 (48.52%), Postives = 111/169 (65.68%), Query Frame = 3

Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD HIDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEAHGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAF 170

HSP 2 Score: 29.6462 bits (65), Expect = 8.837e-44
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L  R  G IP+ KG
Sbjct:  168 KAFGRALRMAVELDERAAGQIPSTKG 193

BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURMA (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia mallei GN=hisB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.837e-44
Identity = 82/169 (48.52%), Postives = 111/169 (65.68%), Query Frame = 3

Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD HIDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEAHGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAF 170

HSP 2 Score: 29.6462 bits (65), Expect = 8.837e-44
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L  R  G IP+ KG
Sbjct:  168 KAFGRALRMAVELDERAAGQIPSTKG 193

BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURM9 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia mallei (strain NCTC 10229) GN=hisB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.837e-44
Identity = 82/169 (48.52%), Postives = 111/169 (65.68%), Query Frame = 3

Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD HIDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEAHGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAF 170

HSP 2 Score: 29.6462 bits (65), Expect = 8.837e-44
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L  R  G IP+ KG
Sbjct:  168 KAFGRALRMAVELDERAAGQIPSTKG 193

BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURM7 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia mallei (strain NCTC 10247) GN=hisB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.837e-44
Identity = 82/169 (48.52%), Postives = 111/169 (65.68%), Query Frame = 3

Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD HIDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEAHGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAF 170

HSP 2 Score: 29.6462 bits (65), Expect = 8.837e-44
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L  R  G IP+ KG
Sbjct:  168 KAFGRALRMAVELDERAAGQIPSTKG 193

BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_RHIE6 (Imidazoleglycerol-phosphate dehydratase OS=Rhizobium etli (strain CIAT 652) GN=hisB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.151e-43
Identity = 79/170 (46.47%), Postives = 110/170 (64.71%), Query Frame = 3

Query:  306 SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKA 815
            + R G V R T ET++SV +N+DG+G +  ST + F DHMLDQLA H L D+ + A GD+HIDDHHT ED G+AIG A+ +ALGDR+GI R+      +DE +   ++DLSGRP L +++     K+GT++T+LV   FQ+L   +G+   I    G N+ HI E   KA
Sbjct:    6 ASRTGSVSRKTNETSISVSVNLDGTGKSKISTGVGFFDHMLDQLARHSLIDMEIDAKGDLHIDDHHTVEDTGIAIGQAISKALGDRRGITRYASIDLAMDETMTKAAVDLSGRPFLVWNVAFSAPKIGTFDTELVREFFQALAQNAGITLHILNHYGANNHHIAETCFKA 175

HSP 2 Score: 33.113 bits (74), Expect = 1.151e-43
Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 1

Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K  ARALR AT++ PR+ G +P+ KG
Sbjct:  174 KAVARALRTATEIDPRQAGRVPSTKG 199

BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURCJ (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=hisB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.152e-43
Identity = 82/169 (48.52%), Postives = 110/169 (65.09%), Query Frame = 3

Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ EV R T ET + VK+++DG+G    +T +PFLDHMLDQ+A HGL D+ V A GD HIDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RVAEVVRNTSETQIRVKLDLDGTGQQKLATGVPFLDHMLDQIARHGLVDLEVEAHGDTHIDDHHTVEDVGITLGQAVAKAIGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGINAHHQLETVFKAF 170

HSP 2 Score: 29.6462 bits (65), Expect = 1.152e-43
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L  R  G IP+ KG
Sbjct:  168 KAFGRALRAAVELDERAAGQIPSTKG 193

BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURCC (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia cenocepacia (strain MC0-3) GN=hisB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.152e-43
Identity = 82/169 (48.52%), Postives = 110/169 (65.09%), Query Frame = 3

Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ EV R T ET + VK+++DG+G    +T +PFLDHMLDQ+A HGL D+ V A GD HIDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RVAEVVRNTSETQIRVKLDLDGTGQQKLATGVPFLDHMLDQIARHGLVDLEVEAHGDTHIDDHHTVEDVGITLGQAVAKAIGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGINAHHQLETVFKAF 170

HSP 2 Score: 29.6462 bits (65), Expect = 1.152e-43
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L  R  G IP+ KG
Sbjct:  168 KAFGRALRAAVELDERAAGQIPSTKG 193

The following BLAST results are available for this feature:

BLAST of DY259991 vs. ExPASy Swiss-Prot

BLAST of DY259991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
HIS7_BURPS	8.837e-44	48.52	Imidazoleglycerol-phosphate dehydratase OS=Burkhol...	[more]
HIS7_BURP6	8.837e-44	48.52	Imidazoleglycerol-phosphate dehydratase OS=Burkhol...	[more]
HIS7_BURP0	8.837e-44	48.52	Imidazoleglycerol-phosphate dehydratase OS=Burkhol...	[more]
HIS7_BURMS	8.837e-44	48.52	Imidazoleglycerol-phosphate dehydratase OS=Burkhol...	[more]
HIS7_BURMA	8.837e-44	48.52	Imidazoleglycerol-phosphate dehydratase OS=Burkhol...	[more]
HIS7_BURM9	8.837e-44	48.52	Imidazoleglycerol-phosphate dehydratase OS=Burkhol...	[more]
HIS7_BURM7	8.837e-44	48.52	Imidazoleglycerol-phosphate dehydratase OS=Burkhol...	[more]
HIS7_RHIE6	1.151e-43	46.47	Imidazoleglycerol-phosphate dehydratase OS=Rhizobi...	[more]
HIS7_BURCJ	1.152e-43	48.52	Imidazoleglycerol-phosphate dehydratase OS=Burkhol...	[more]
HIS7_BURCC	1.152e-43	48.52	Imidazoleglycerol-phosphate dehydratase OS=Burkhol...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAP10YN21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY259991 ID=DY259991; Name=DY259991; organism=Citrus clementina; type=EST; length=917bp
GCTGCGTTTTGGCATATAGCCGTGTTGGCGTTGCTACTCTCTCTGCGACA
TTGGAAACGATAGTGTGTAAAATGGAGCTCTCGGTCCCAGCTCGCCTTGT
TCACCTTTCAATCTCGTCCACGTCCTCACGCCGGCTCCTCGTTAAACCAA
AAACCAATCTCTCTCGTAAACTTCTCCCCATCTCCACACAATACTGCTCC
TCAACGCGCCGCATGAACTCCCTCACAACACCACGCGCCTCTCTAAACCC
AGACGGCGACAGCAAACACAACAACGGGTCCGCCTCAACTTCCTCTGCCG
TCGATTCTGGTCGAATTGGGGAAGTGAAAAGAGTCACGAAAGAGACCAAC
GTTTCTGTGAAGATTAACGTCGATGGCTCTGGCGTTGCTGATTCATCCAC
TTGCATTCCCTTCCTAGATCACATGCTTGATCAACTGGCTTCGCACGGGC
TATTTGATGTGCACGTGAGGGCAACCGGAGACATTCACATTGATGATCAT
CATACCAATGAAGACGTTGGGCTTGCCATTGGCACGGCATTGCTGCAAGC
TCTTGGTGATAGGAAAGGAATTAATCGGTTTGGTGATTTTACAGCTCCTC
TTGATGAAGCTTTGATTCATGTTTCATTGGATTTATCTGGACGGCCACAT
TTAAATTATGATTTGCAAATTCCCACACAGAAAGTTGGAACTTACAACAC
TCAATTGGTGGAACCACTTTTCCAATCCTTGGTGAACACTTCTGGGATGG
ACCCTTCCATTCAACAGCTTGCTGGAAAAAATTCCTCTCACATTATTGAG
GCAACCCTCAAAGCTTTTTGCTAGGGCTCTCCGAAAAGCAACAAAATTAG
GACCCCGTCGCCGTGGAAATATACCCAACCTCAAAGGGGGTTCTCCAACA
TCTTGGAATCTCGACGG