DY259991

Overview
NameDY259991
Unique NameDY259991
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length917
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1388 contig Ccv1_Contig1388:1..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_PARDP (Imidazoleglycerol-phosphate dehydratase OS=Paracoccus denitrificans (strain Pd 1222) GN=hisB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.177e-43
Identity = 83/168 (49.40%), Postives = 117/168 (69.64%), Query Frame = 3 
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKA 815
            R  ++ R T ET + V++++DG+G  D+ T + F DHMLDQLA H L D+ VRA GD+HIDDHHT ED G+AIG AL QALGD++GI R+G F   +D+AL+  +LDLS RP+L +++  P QK+GT++T+LV   FQ+L    G+   + ++ G N+ HI EA  KA
Sbjct:    2 RRAKITRETAETQIEVELDLDGTGRYDNRTGVGFFDHMLDQLARHSLIDLTVRAKGDLHIDDHHTVEDTGIAIGQALTQALGDKRGIRRYGSFHLAMDDALVRAALDLSARPYLVWNVDFPAQKIGTFDTELVREFFQALSTHGGITLHVDRIHGLNAHHIAEAAFKA 169
[Close]
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_ACIAC (Imidazoleglycerol-phosphate dehydratase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=hisB PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.498e-43
Identity = 85/176 (48.30%), Postives = 112/176 (63.64%), Query Frame = 3 
Query:  291 SSAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            S+A +  RI EV R T ET + V++N+DG+G A  S+ I F DHMLDQ+A HGL D+ +   GD+HID HHT EDVG+ +G A  +A+GD+KGI R+G    PLDEAL  V +D SGRP L+ D++     +G  +TQLV   FQ  VN +G+   I  L G N+ H  E   KAF
Sbjct:    9 STASEGDRIAEVARNTAETRIRVRVNLDGTGNARLSSGIGFFDHMLDQIARHGLIDLDIECEGDLHIDGHHTVEDVGITLGQAFARAVGDKKGIRRYGHAYVPLDEALSRVVVDFSGRPGLHMDVKFTAGSIGQLDTQLVYEFFQGFVNHAGVTLHIDNLKGFNAHHQCETIFKAF 184

HSP 2 Score: 29.6462 bits (65), Expect = 1.498e-43
Identity = 15/26 (57.69%), Postives = 16/26 (61.54%), Query Frame = 1 
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K FARALR A    PR  G IP+ KG
Sbjct:  182 KAFARALRAALARDPRSAGVIPSTKG 207
[Close]
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURCH (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia cenocepacia (strain HI2424) GN=hisB PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.501e-43
Identity = 82/169 (48.52%), Postives = 110/169 (65.09%), Query Frame = 3 
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ EV R T ET + VK+++DG+G    +T +PFLDHMLDQ+A HGL D+ V A GD HIDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RVAEVVRNTSETQIRVKLDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLEVEAHGDTHIDDHHTVEDVGITLGQAVAKAIGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGINAHHQLETVFKAF 170

HSP 2 Score: 29.6462 bits (65), Expect = 1.501e-43
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1 
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L  R  G IP+ KG
Sbjct:  168 KAFGRALRAAVELDERAAGQIPSTKG 193
[Close]
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURCA (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia cenocepacia (strain AU 1054) GN=hisB PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.501e-43
Identity = 82/169 (48.52%), Postives = 110/169 (65.09%), Query Frame = 3 
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ EV R T ET + VK+++DG+G    +T +PFLDHMLDQ+A HGL D+ V A GD HIDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RVAEVVRNTSETQIRVKLDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLEVEAHGDTHIDDHHTVEDVGITLGQAVAKAIGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGINAHHQLETVFKAF 170

HSP 2 Score: 29.6462 bits (65), Expect = 1.501e-43
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1 
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L  R  G IP+ KG
Sbjct:  168 KAFGRALRAAVELDERAAGQIPSTKG 193
[Close]
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_RALEJ (Imidazoleglycerol-phosphate dehydratase OS=Ralstonia eutropha (strain JMP134) GN=hisB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.501e-43
Identity = 80/169 (47.34%), Postives = 109/169 (64.50%), Query Frame = 3 
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ EV R T ET + V +N+DG+G    ++ +PFLDHMLDQ+A HG+FD+ V ATGD HIDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDE L  V +D SGRP L + +     +VG+++  L    F+  VN +G+   I  L G N+ H  E   KAF
Sbjct:    2 RVAEVTRNTSETQIRVSLNLDGTGRQKLASGVPFLDHMLDQIARHGMFDLEVEATGDTHIDDHHTVEDVGITLGQAVAKAIGDKKGITRYGHSYVPLDECLSRVVIDFSGRPGLEFHVPFTRARVGSFDVDLTIEFFRGFVNHAGVTLHIDNLRGINAHHQCETVFKAF 170

HSP 2 Score: 30.4166 bits (67), Expect = 1.501e-43
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1 
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L PR    IP+ KG
Sbjct:  168 KAFGRALRMAVELDPRAANTIPSTKG 193
[Close]
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_METSB (Imidazoleglycerol-phosphate dehydratase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=hisB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.955e-43
Identity = 79/168 (47.02%), Postives = 111/168 (66.07%), Query Frame = 3 
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKA 815
            R   + R TKET ++V +++DG+G A  ST + F DHML+QLA H L D+ V ATGD+HID HHT ED G+A+G AL QALGDR GI R+ +   P+DE L   ++D+SGRP L +  +    K+G ++T+LV   FQ+ V  +G+   I+ L G+N+ HI E+  KA
Sbjct:    2 RAATISRKTKETEIAVSVDLDGTGAATVSTGVGFFDHMLEQLARHSLIDISVAATGDLHIDQHHTVEDTGIALGQALRQALGDRAGIARYANALLPMDETLTRAAIDVSGRPFLVFKTEFRRAKIGEFDTELVREFFQAFVMNAGLTVHIETLYGENAHHIAESCFKA 169

HSP 2 Score: 31.187 bits (69), Expect = 1.955e-43
Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 1 
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K  ARALR A ++ PR++G IP+ KG
Sbjct:  168 KALARALRLAIEVDPRQKGAIPSTKG 193
[Close]
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BEII9 (Imidazoleglycerol-phosphate dehydratase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=hisB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.956e-43
Identity = 80/167 (47.90%), Postives = 111/167 (66.47%), Query Frame = 3 
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLK 812
            R G V R TKET + V +++DG G A  ST I F DHML+QLA H L D+ ++A GD+HIDDHHT ED G+A+G A+ QALGDR GI R+ D   P+DE L  V++D+SGRP+L +       K+GT++T+LV   FQ+     G +  ++ L G+N+ HI E++ K
Sbjct:    2 RTGAVSRKTKETEIEVAVDLDGRGTAHISTGIGFFDHMLEQLARHSLIDMTIKAKGDLHIDDHHTVEDTGIALGQAVRQALGDRAGITRYADVLLPMDETLTRVAVDVSGRPYLVFRTHFLRDKIGTFDTELVREFFQAFTTHLGANIHVETLYGENAHHISESSFK 168

HSP 2 Score: 29.6462 bits (65), Expect = 1.956e-43
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 1 
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K  ARALR A  L PR+ G IP+ KG
Sbjct:  168 KGLARALRVALTLDPRQLGEIPSTKG 193
[Close]
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURCM (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=hisB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.548e-43
Identity = 81/169 (47.93%), Postives = 110/169 (65.09%), Query Frame = 3 
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ EV R T ET + VK+++DG+G    +T +PFLDHMLDQ+A HGL D+ V A GD HIDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RVAEVVRNTSETQIRVKLDLDGTGRQKLATGVPFLDHMLDQIARHGLIDLEVEAHGDTHIDDHHTVEDVGITLGQAVAKAIGDKKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGINAHHQLETVFKAF 170

HSP 2 Score: 29.6462 bits (65), Expect = 2.548e-43
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1 
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L  R  G IP+ KG
Sbjct:  168 KAFGRALRAAVELDERAAGQIPSTKG 193
[Close]
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_BURA4 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia ambifaria (strain MC40-6) GN=hisB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.548e-43
Identity = 81/169 (47.93%), Postives = 110/169 (65.09%), Query Frame = 3 
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ EV R T ET + VK+++DG+G    +T +PFLDHMLDQ+A HGL D+ V A GD HIDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDEAL  V +D SGRP L + +     ++GT++  L    F+  VN +G+   I  L G N+ H +E   KAF
Sbjct:    2 RVAEVVRNTSETQIRVKLDLDGTGRQKLATGVPFLDHMLDQIARHGLIDLEVEAHGDTHIDDHHTVEDVGITLGQAVAKAIGDKKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGINAHHQLETVFKAF 170

HSP 2 Score: 29.6462 bits (65), Expect = 2.548e-43
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1 
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L  R  G IP+ KG
Sbjct:  168 KAFGRALRAAVELDERAAGQIPSTKG 193
[Close]
BLAST of DY259991 vs. ExPASy Swiss-Prot
Match: HIS7_RALME (Imidazoleglycerol-phosphate dehydratase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=hisB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.548e-43
Identity = 79/169 (46.75%), Postives = 109/169 (64.50%), Query Frame = 3 
Query:  312 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQKVGTYNTQLVEPLFQSLVNTSGMDPSIQQLAGKNSSHIIEATLKAF 818
            R+ EV R T ET + V +N+DG+G    ++ +PFLDHMLDQ+A HG+FD+ V ATGD HIDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDE L  V +D SGRP L + +     +VG+++  L    F+  VN +G+   I  + G N+ H  E   KAF
Sbjct:    2 RVAEVTRNTSETQIRVSLNLDGTGRQKLASGVPFLDHMLDQIARHGMFDLEVEATGDTHIDDHHTVEDVGITLGQAVARAIGDKKGITRYGHSYVPLDECLSRVVIDFSGRPGLEFHVPFTRARVGSFDVDLTIEFFRGFVNHAGVTLHIDNIRGINAHHQCETVFKAF 170

HSP 2 Score: 30.4166 bits (67), Expect = 2.548e-43
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1 
Query:  811 KLFARALRKATKLGPRRRGNIPNLKG 888
            K F RALR A +L PR    IP+ KG
Sbjct:  168 KAFGRALRMAVELDPRAANTIPSTKG 193
The following BLAST results are available for this feature:
BLAST of DY259991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS7_PARDP1.177e-4349.40Imidazoleglycerol-phosphate dehydratase OS=Paracoc... [more]
HIS7_ACIAC1.498e-4348.30Imidazoleglycerol-phosphate dehydratase OS=Acidovo... [more]
HIS7_BURCH1.501e-4348.52Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_BURCA1.501e-4348.52Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_RALEJ1.501e-4347.34Imidazoleglycerol-phosphate dehydratase OS=Ralston... [more]
HIS7_METSB1.955e-4347.02Imidazoleglycerol-phosphate dehydratase OS=Methylo... [more]
HIS7_BEII91.956e-4347.90Imidazoleglycerol-phosphate dehydratase OS=Beijeri... [more]
HIS7_BURCM2.548e-4347.93Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_BURA42.548e-4347.93Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_RALME2.548e-4346.75Imidazoleglycerol-phosphate dehydratase OS=Ralston... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259991 ID=DY259991; Name=DY259991; organism=Citrus clementina; type=EST; length=917bp
GCTGCGTTTTGGCATATAGCCGTGTTGGCGTTGCTACTCTCTCTGCGACA
TTGGAAACGATAGTGTGTAAAATGGAGCTCTCGGTCCCAGCTCGCCTTGT
TCACCTTTCAATCTCGTCCACGTCCTCACGCCGGCTCCTCGTTAAACCAA
AAACCAATCTCTCTCGTAAACTTCTCCCCATCTCCACACAATACTGCTCC
TCAACGCGCCGCATGAACTCCCTCACAACACCACGCGCCTCTCTAAACCC
AGACGGCGACAGCAAACACAACAACGGGTCCGCCTCAACTTCCTCTGCCG
TCGATTCTGGTCGAATTGGGGAAGTGAAAAGAGTCACGAAAGAGACCAAC
GTTTCTGTGAAGATTAACGTCGATGGCTCTGGCGTTGCTGATTCATCCAC
TTGCATTCCCTTCCTAGATCACATGCTTGATCAACTGGCTTCGCACGGGC
TATTTGATGTGCACGTGAGGGCAACCGGAGACATTCACATTGATGATCAT
CATACCAATGAAGACGTTGGGCTTGCCATTGGCACGGCATTGCTGCAAGC
TCTTGGTGATAGGAAAGGAATTAATCGGTTTGGTGATTTTACAGCTCCTC
TTGATGAAGCTTTGATTCATGTTTCATTGGATTTATCTGGACGGCCACAT
TTAAATTATGATTTGCAAATTCCCACACAGAAAGTTGGAACTTACAACAC
TCAATTGGTGGAACCACTTTTCCAATCCTTGGTGAACACTTCTGGGATGG
ACCCTTCCATTCAACAGCTTGCTGGAAAAAATTCCTCTCACATTATTGAG
GCAACCCTCAAAGCTTTTTGCTAGGGCTCTCCGAAAAGCAACAAAATTAG
GACCCCGTCGCCGTGGAAATATACCCAACCTCAAAGGGGGTTCTCCAACA
TCTTGGAATCTCGACGG
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