DY259992 | Citrus Genome Database

Overview


Name	DY259992
Unique Name	DY259992
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1107

Libraries


Library Name	Type
Fruit-TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_RAT (60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 3.926e-57
Identity = 93/149 (62.42%), Postives = 104/149 (69.80%), Query Frame = 1

Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P  Q
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQ 149

HSP 2 Score: 53.9138 bits (128), Expect = 3.926e-57
Identity = 28/53 (52.83%), Postives = 31/53 (58.49%), Query Frame = 2

Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI KPVHKHRE+RGLTSAG+K RGL GKG              W+R  T
Sbjct:  146 PDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197

BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_PONAB (60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 3.926e-57
Identity = 93/149 (62.42%), Postives = 104/149 (69.80%), Query Frame = 1

Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P  Q
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQ 149

HSP 2 Score: 53.9138 bits (128), Expect = 3.926e-57
Identity = 28/53 (52.83%), Postives = 31/53 (58.49%), Query Frame = 2

Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI KPVHKHRE+RGLTSAG+K RGL GKG              W+R  T
Sbjct:  146 PDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197

BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_MOUSE (60S ribosomal protein L15 OS=Mus musculus GN=Rpl15 PE=2 SV=4)

HSP 1 Score: 189.889 bits (481), Expect = 3.926e-57
Identity = 93/149 (62.42%), Postives = 104/149 (69.80%), Query Frame = 1

Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P  Q
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQ 149

HSP 2 Score: 53.9138 bits (128), Expect = 3.926e-57
Identity = 28/53 (52.83%), Postives = 31/53 (58.49%), Query Frame = 2

Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI KPVHKHRE+RGLTSAG+K RGL GKG              W+R  T
Sbjct:  146 PDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197

BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_MACFA (60S ribosomal protein L15 OS=Macaca fascicularis GN=RPL15 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.926e-57
Identity = 93/149 (62.42%), Postives = 104/149 (69.80%), Query Frame = 1

Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P  Q
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQ 149

HSP 2 Score: 53.9138 bits (128), Expect = 3.926e-57
Identity = 28/53 (52.83%), Postives = 31/53 (58.49%), Query Frame = 2

Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI KPVHKHRE+RGLTSAG+K RGL GKG              W+R  T
Sbjct:  146 PDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197

BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_HUMAN (60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 3.926e-57
Identity = 93/149 (62.42%), Postives = 104/149 (69.80%), Query Frame = 1

Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P  Q
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQ 149

HSP 2 Score: 53.9138 bits (128), Expect = 3.926e-57
Identity = 28/53 (52.83%), Postives = 31/53 (58.49%), Query Frame = 2

Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI KPVHKHRE+RGLTSAG+K RGL GKG              W+R  T
Sbjct:  146 PDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197

BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_BOVIN (60S ribosomal protein L15 OS=Bos taurus GN=RPL15 PE=2 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 3.926e-57
Identity = 93/149 (62.42%), Postives = 104/149 (69.80%), Query Frame = 1

Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P  Q
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQ 149

HSP 2 Score: 53.9138 bits (128), Expect = 3.926e-57
Identity = 28/53 (52.83%), Postives = 31/53 (58.49%), Query Frame = 2

Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI KPVHKHRE+RGLTSAG+K RGL GKG              W+R  T
Sbjct:  146 PDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197

BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_HYDAT (60S ribosomal protein L15 OS=Hydra attenuata GN=RPL15 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 8.701e-57
Identity = 92/149 (61.74%), Postives = 105/149 (70.47%), Query Frame = 1

Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VL+SYW+ EDSTYK+FEV+LVD  H AIR +P  Q
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLSSYWVGEDSTYKFFEVVLVDTFHKAIRRNPDTQ 149

HSP 2 Score: 53.5286 bits (127), Expect = 8.701e-57
Identity = 29/53 (54.72%), Postives = 30/53 (56.60%), Query Frame = 2

Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI K VHKHRE+RGLTSAGKK RGL GKG              WKR  T
Sbjct:  146 PDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNT 197

BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_CARAU (60S ribosomal protein L15 OS=Carassius auratus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 8.701e-57
Identity = 92/149 (61.74%), Postives = 105/149 (70.47%), Query Frame = 1

Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VL+SYW+ EDSTYK+FEV+LVD  H AIR +P  Q
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLSSYWVGEDSTYKFFEVVLVDTFHKAIRRNPDTQ 149

HSP 2 Score: 53.5286 bits (127), Expect = 8.701e-57
Identity = 29/53 (54.72%), Postives = 30/53 (56.60%), Query Frame = 2

Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI K VHKHRE+RGLTSAGKK RGL GKG              WKR  T
Sbjct:  146 PDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNT 197

BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_MEGAM (60S ribosomal protein L15 OS=Megalobrama amblycephala GN=rpl15 PE=2 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 1.134e-56
Identity = 92/149 (61.74%), Postives = 105/149 (70.47%), Query Frame = 1

Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ +LWRKKQS+VMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P  Q
Sbjct:    1 MGAYKYMQKLWRKKQSNVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQ 149

HSP 2 Score: 53.5286 bits (127), Expect = 1.134e-56
Identity = 29/53 (54.72%), Postives = 30/53 (56.60%), Query Frame = 2

Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI K VHKHRE+RGLTSAGKK RGL GKG              WKR  T
Sbjct:  146 PDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNT 197

BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_HYPMO (60S ribosomal protein L15 OS=Hypophthalmichthys molitrix GN=rpl15 PE=2 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 3.277e-56
Identity = 93/149 (62.42%), Postives = 105/149 (70.47%), Query Frame = 1

Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ ELWRKKQS+VMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P  Q
Sbjct:    1 MGAYKYMQELWRKKQSNVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQ 149

HSP 2 Score: 50.447 bits (119), Expect = 3.277e-56
Identity = 28/53 (52.83%), Postives = 29/53 (54.72%), Query Frame = 2

Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI K V KHRE+RGLTSAGKK RGL GKG              WKR  T
Sbjct:  146 PDTQWITKAVRKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNT 197

The following BLAST results are available for this feature:

BLAST of DY259992 vs. ExPASy Swiss-Prot

BLAST of DY259992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92


Match Name	E-value	Identity	Description
RL15_RAT	3.926e-57	62.42	60S ribosomal protein L15 OS=Rattus norvegicus GN=...	[more]
RL15_PONAB	3.926e-57	62.42	60S ribosomal protein L15 OS=Pongo abelii GN=RPL15...	[more]
RL15_MOUSE	3.926e-57	62.42	60S ribosomal protein L15 OS=Mus musculus GN=Rpl15...	[more]
RL15_MACFA	3.926e-57	62.42	60S ribosomal protein L15 OS=Macaca fascicularis G...	[more]
RL15_HUMAN	3.926e-57	62.42	60S ribosomal protein L15 OS=Homo sapiens GN=RPL15...	[more]
RL15_BOVIN	3.926e-57	62.42	60S ribosomal protein L15 OS=Bos taurus GN=RPL15 P...	[more]
RL15_HYDAT	8.701e-57	61.74	60S ribosomal protein L15 OS=Hydra attenuata GN=RP...	[more]
RL15_CARAU	8.701e-57	61.74	60S ribosomal protein L15 OS=Carassius auratus GN=...	[more]
RL15_MEGAM	1.134e-56	61.74	60S ribosomal protein L15 OS=Megalobrama amblyceph...	[more]
RL15_HYPMO	3.277e-56	62.42	60S ribosomal protein L15 OS=Hypophthalmichthys mo...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAP10YN22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY259992 ID=DY259992; Name=DY259992; organism=Citrus clementina; type=EST; length=1107bp
CATCACAGCACCCTTTAGCTCGACGATCGAACAATGGGTGCATACAAGTA
CGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTCTTGC
AGAGGGTGAGGTGCTGGGAGTACCGTCAGCACCCTTCCATCGTCCGCGTC
ACCCGTCCCACTCGCCCCGACAAGGCTCGCCGCTTGGGCTACAAGGCCAA
GCAGGGTTATGTCGTTTATCGTGTGCGTGTAAGACGTGGAGGACGAAAGA
GACCAGTTCCCAAGGGTATTGTATATGGTAAACCGACAAACCAGGGTGTC
ACTCAGCTTAAATTCCAGCGCAGCAAGCGTTCAGTTGCTGAGGAACGTGC
CGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCAACTCATACTGGATCAATG
AGGATTCAACTTACAAGTACTTTGAGGTAATCCTGGTGGATGCTGCCCAC
AATGCTATCCGCAATGACCCCCAGGATCAACTGGATCTGTAAGCCTGTCC
ACAAGCACAGGGAGCTTCGTGGACTCACTTCTGCTGGGAAGAAGTACAGA
GGTCTCCGAGGAAAGGGGTCACCTTGCACCACAAGGCACGACCTTCAAGA
AGGGCAACCCTGGAAGAGGAACCAGACTCCTCTCTCTCAGGCGTTACCGT
TAAACCTTCTGGATTGGTTACTTGGTGTTTTTTCACATTTATCAACCTAG
TTTAAATTCCGTTGGAGTTTGGAACCCCGAAAACAAGGTGTTTTTGGTTA
GTTTTTTGCTGCCACACGGGTCTAATTTTTGATTTCACTTGGGCCAATTG
AAATTTTGTAAATTCCAAAGGATTTGTTTTATCCAAAAAAATACACTCCA
GAATTGTGGGGGGGACACGTTCCCTGCCCGGCCCAAAAAAAATAAAAAAA
AAAACCGCCCTTTTTCTTGCGCACATTTTGGTTCATAAAAATAAAACCAT
ATACAGACGAAGTTGTGGAGCGACGGGTCAGGGGCACTATGCGATGTGAT
ACTAGAACAGACTTGATTTTTGCTTCCCGCGCGCAACCGGGCAGCTATTG
GCGTGTCACGCATATACGATGGAATATGCTAACGGTTCTGCCTCAGCCAG
CGCTACA