DY259992

Overview
NameDY259992
Unique NameDY259992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1107
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_NEUCR (60S ribosomal protein L15 OS=Neurospora crassa GN=rpl-15 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.098e-55
Identity = 92/147 (62.59%), Postives = 103/147 (70.07%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            MGA KY+ EL +KKQSDV+RFL RVRCWE RQ   I R +RP+RPDKARRLGYKAKQ                       YGKPTNQGV QLK+QRS +S AEER GR+   L+VLNSYWIN+DSTYKYFEVILVD  H AIR DP+
Sbjct:    1 MGALKYLEELQKKKQSDVVRFLLRVRCWELRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRARVRRGGRKKPVPKGATYGKPTNQGVNQLKYQRSLKSTAEERVGRRCANLRVLNSYWINQDSTYKYFEVILVDPQHKAIRRDPR 147          

HSP 2 Score: 55.4546 bits (132), Expect = 2.098e-55
Identity = 29/53 (54.72%), Postives = 33/53 (62.26%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            PRINWI  PVHKHRE RGLTS GK+ RGL        TR   +  + WKR+ T
Sbjct:  146 PRINWIVNPVHKHRESRGLTSTGKRSRGLNKGHRYNKTRAGRR--KTWKRHNT 196          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_DROME (60S ribosomal protein L15 OS=Drosophila melanogaster GN=RpL15 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.590e-54
Identity = 84/147 (57.14%), Postives = 103/147 (70.07%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            MGAY+Y+ EL+RKKQSDVMR+L R+R W+YRQ   + R  RPTRPDKARRLGY+AKQ                       YGKP + GV QLK  R  +S+AEER GR+LGGL+VLNSYWI +D++YKYFEVIL+D  H+AIR DP+
Sbjct:    1 MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFVIYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDTHHSAIRRDPK 147          

HSP 2 Score: 59.3066 bits (142), Expect = 8.590e-54
Identity = 30/50 (60.00%), Postives = 33/50 (66.00%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKR 619
            P+INWICK VHKHRELRGLTSAGK  RG+ GKG   +          WKR
Sbjct:  146 PKINWICKHVHKHRELRGLTSAGKSSRGI-GKGYRYSQTIGGSRRAAWKR 194          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_ANOGA (60S ribosomal protein L15 OS=Anopheles gambiae GN=RpL15 PE=2 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 2.481e-53
Identity = 86/146 (58.90%), Postives = 101/146 (69.18%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDP 471
            MGAY+YV EL+RKKQSDVMR+L R+R W+YRQ     R  RP+RPDKARRLGYKAKQ                       YGKP + GV QLK  R  +SVAEER GR+LGGL+VLNSYW+ +D+ +KYFEVI+VD AHNAIR DP
Sbjct:    1 MGAYRYVQELYRKKQSDVMRYLLRIRVWQYRQMTRFHRAPRPSRPDKARRLGYKAKQGFSIFRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRCLQSVAEERVGRRLGGLRVLNSYWVAQDAAHKYFEVIMVDPAHNAIRRDP 146          

HSP 2 Score: 56.6102 bits (135), Expect = 2.481e-53
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            P +NWIC  VHKHRELRGLTSAGK  RGL GKG
Sbjct:  146 PNVNWICNAVHKHRELRGLTSAGKSSRGL-GKG 177          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_ASPNG (60S ribosomal protein L15 OS=Aspergillus niger GN=rpl15 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.234e-53
Identity = 88/145 (60.69%), Postives = 101/145 (69.66%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            MGA KYV E+ +KKQSDV+RFL RVRCWE RQ  +I R +RP+RPDKARRLGYKAKQ                       YGKPTN G+ QLK+QR+ R+ AEER GR+   L+VLNSYWIN+DSTYKYFEVILVD  H AIR D
Sbjct:    1 MGALKYVEEIQKKKQSDVIRFLLRVRCWELRQLNAIHRASRPSRPDKARRLGYKAKQGYVVYRIRVRRGGRKRPAPKGATYGKPTNMGINQLKYQRALRATAEERVGRRCANLRVLNSYWINQDSTYKYFEVILVDPQHKAIRRD 145          

HSP 2 Score: 53.1434 bits (126), Expect = 3.234e-53
Identity = 27/52 (51.92%), Postives = 30/52 (57.69%), Query Frame = 2
Query:  473 RINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            RINWIC  VHKHRE RGLT+ GKK RG+        TR   +    WKR  T
Sbjct:  147 RINWICNAVHKHREARGLTATGKKSRGINKGHRYNNTRSGRR--HTWKRQNT 196          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_CHITE (60S ribosomal protein L15 OS=Chironomus tentans GN=RpL15 PE=3 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 5.496e-53
Identity = 83/147 (56.46%), Postives = 103/147 (70.07%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            MGAY+YV EL+RKKQSDV+R+L RVRCW+YRQ   + R  RP+RPDKARRLGYKAKQ                       YGKP + GV QLK  R+ +SVAEER GR++GGL+VLNSYW+ +D+ +KY+EVI VD  HNA+R DP+
Sbjct:    1 MGAYRYVQELYRKKQSDVLRYLLRVRCWQYRQLTKLHRAPRPSRPDKARRLGYKAKQGFLIYRIRVRRGGRKRPVHKGCTYGKPKSHGVNQLKPYRNLQSVAEERVGRRMGGLRVLNSYWVAQDAAFKYYEVICVDPFHNAVRRDPK 147          

HSP 2 Score: 55.8398 bits (133), Expect = 5.496e-53
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            P++NW+C  VHKHRELRGLTSAGK  RG+ GKG
Sbjct:  146 PKVNWVCNAVHKHRELRGLTSAGKSSRGV-GKG 177          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_CAEEL (60S ribosomal protein L15 OS=Caenorhabditis elegans GN=rpl-15 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.587e-52
Identity = 81/149 (54.36%), Postives = 102/149 (68.46%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            MGAYKY+ E+WRKKQSD +R+L R+R W YRQ  ++ RV RPTRP+KARRLGY+AKQ                       YGKP   GV +LK  +SK++VAE RAGR+LG L+VLNSYW+ EDSTYK++EV+L+D  H AIR +P  Q
Sbjct:    1 MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFVVYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYEVVLIDPFHKAIRRNPDTQ 149          

HSP 2 Score: 57.3806 bits (137), Expect = 1.587e-52
Identity = 29/53 (54.72%), Postives = 33/53 (62.26%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI KPVHKHRE RGLTSAG+K RGL GKG   +      + + WKR  T
Sbjct:  146 PDTQWITKPVHKHREQRGLTSAGRKSRGL-GKGWRFSATRGGSQAKNWKRKNT 197          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15B_SCHPO (60S ribosomal protein L15-B OS=Schizosaccharomyces pombe GN=rpl15b PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.975e-52
Identity = 86/147 (58.50%), Postives = 99/147 (67.35%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            MGAYKY+ EL +KKQSDV  FL RVR WEYRQ   I R +RP+RPDKARRLGYKAKQ                       YGKP +QGV  LK+QRS R  AEER GR    L+VLNSYW+N+D+TYK+FEVILVD +H AIR DP+
Sbjct:    1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDPSHKAIRRDPR 147          

HSP 2 Score: 55.0694 bits (131), Expect = 5.975e-52
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            PRINWI  PVHKHRE RGLTS GKK RG+ GKG
Sbjct:  146 PRINWIVNPVHKHRESRGLTSIGKKSRGI-GKG 177          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15A_SCHPO (60S ribosomal protein L15-A OS=Schizosaccharomyces pombe GN=rpl15a PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.975e-52
Identity = 86/147 (58.50%), Postives = 99/147 (67.35%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            MGAYKY+ EL +KKQSDV  FL RVR WEYRQ   I R +RP+RPDKARRLGYKAKQ                       YGKP +QGV  LK+QRS R  AEER GR    L+VLNSYW+N+D+TYK+FEVILVD +H AIR DP+
Sbjct:    1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDPSHKAIRRDPR 147          

HSP 2 Score: 55.0694 bits (131), Expect = 5.975e-52
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            PRINWI  PVHKHRE RGLTS GKK RG+ GKG
Sbjct:  146 PRINWIVNPVHKHRESRGLTSIGKKSRGI-GKG 177          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_ORCLI (60S ribosomal protein L15 OS=Orconectes limosus GN=RPL15 PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 5.410e-50
Identity = 84/143 (58.74%), Postives = 99/143 (69.23%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIR 462
            MGAYKY+ E++RKKQSDVMRFL R+R W+YR    + R  RPTRP+KARRLGYKAKQ                       YGKP + GV QLK  R+ +S+AEER GR+LGGL+VLNSYW+ +DSTYKYFEVILVD  HN IR
Sbjct:    1 MGAYKYMQEIYRKKQSDVMRFLLRIRAWQYRHLNKLHRAPRPTRPEKARRLGYKAKQGFVIYRIRIRRGGRKRPVPKGATYGKPKSHGVNQLKPTRNLQSLAEERTGRRLGGLRVLNSYWVAQDSTYKYFEVILVDIRHNVIR 143          

HSP 2 Score: 49.2914 bits (116), Expect = 5.410e-50
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 2
Query:  476 INWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            +NWICK   KHRE+RG TSAG+K+RGL G+G   +          W R+ T
Sbjct:  148 LNWICKHTQKHREMRGKTSAGRKHRGL-GRGFHYSQTKGGSRRSCWLRHNT 197          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_DICDI (60S ribosomal protein L15 OS=Dictyostelium discoideum GN=rpl15-1 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.451e-41
Identity = 94/191 (49.21%), Postives = 113/191 (59.16%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQLDL*ACPQAQGASWTHFCWEEVQRSPRKGVTLHHKARPSRRA 606
            MGAYKY+ EL++KKQSD +RFL RVRCWEYR  P   R + PTR DKARRLGYKA Q                        GKP   GV +LK  R+ RSVAEER GR+   L+VLNSYW+N+DSTYKY+EVILVD +HNAIRNDP+         + +          + +   RKG     K RPSR+A
Sbjct:    1 MGAYKYLQELYKKKQSDAVRFLLRVRCWEYRNLPVCHRASHPTRVDKARRLGYKATQGFVVYRIRVRRGGRKRQVPGGRTGGKPKTHGVNELKPSRNLRSVAEERVGRRCPNLRVLNSYWVNQDSTYKYYEVILVDNSHNAIRNDPRYNWICKPVHKHRELRGLTSAGIKARGLRRKGTHRASKTRPSRQA 191          
The following BLAST results are available for this feature:
BLAST of DY259992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL15_NEUCR2.098e-5562.5960S ribosomal protein L15 OS=Neurospora crassa GN=... [more]
RL15_DROME8.590e-5457.1460S ribosomal protein L15 OS=Drosophila melanogast... [more]
RL15_ANOGA2.481e-5358.9060S ribosomal protein L15 OS=Anopheles gambiae GN=... [more]
RL15_ASPNG3.234e-5360.6960S ribosomal protein L15 OS=Aspergillus niger GN=... [more]
RL15_CHITE5.496e-5356.4660S ribosomal protein L15 OS=Chironomus tentans GN... [more]
RL15_CAEEL1.587e-5254.3660S ribosomal protein L15 OS=Caenorhabditis elegan... [more]
RL15B_SCHPO5.975e-5258.5060S ribosomal protein L15-B OS=Schizosaccharomyces... [more]
RL15A_SCHPO5.975e-5258.5060S ribosomal protein L15-A OS=Schizosaccharomyces... [more]
RL15_ORCLI5.410e-5058.7460S ribosomal protein L15 OS=Orconectes limosus GN... [more]
RL15_DICDI1.451e-4149.2160S ribosomal protein L15 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259992 ID=DY259992; Name=DY259992; organism=Citrus clementina; type=EST; length=1107bp
CATCACAGCACCCTTTAGCTCGACGATCGAACAATGGGTGCATACAAGTA
CGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTCTTGC
AGAGGGTGAGGTGCTGGGAGTACCGTCAGCACCCTTCCATCGTCCGCGTC
ACCCGTCCCACTCGCCCCGACAAGGCTCGCCGCTTGGGCTACAAGGCCAA
GCAGGGTTATGTCGTTTATCGTGTGCGTGTAAGACGTGGAGGACGAAAGA
GACCAGTTCCCAAGGGTATTGTATATGGTAAACCGACAAACCAGGGTGTC
ACTCAGCTTAAATTCCAGCGCAGCAAGCGTTCAGTTGCTGAGGAACGTGC
CGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCAACTCATACTGGATCAATG
AGGATTCAACTTACAAGTACTTTGAGGTAATCCTGGTGGATGCTGCCCAC
AATGCTATCCGCAATGACCCCCAGGATCAACTGGATCTGTAAGCCTGTCC
ACAAGCACAGGGAGCTTCGTGGACTCACTTCTGCTGGGAAGAAGTACAGA
GGTCTCCGAGGAAAGGGGTCACCTTGCACCACAAGGCACGACCTTCAAGA
AGGGCAACCCTGGAAGAGGAACCAGACTCCTCTCTCTCAGGCGTTACCGT
TAAACCTTCTGGATTGGTTACTTGGTGTTTTTTCACATTTATCAACCTAG
TTTAAATTCCGTTGGAGTTTGGAACCCCGAAAACAAGGTGTTTTTGGTTA
GTTTTTTGCTGCCACACGGGTCTAATTTTTGATTTCACTTGGGCCAATTG
AAATTTTGTAAATTCCAAAGGATTTGTTTTATCCAAAAAAATACACTCCA
GAATTGTGGGGGGGACACGTTCCCTGCCCGGCCCAAAAAAAATAAAAAAA
AAAACCGCCCTTTTTCTTGCGCACATTTTGGTTCATAAAAATAAAACCAT
ATACAGACGAAGTTGTGGAGCGACGGGTCAGGGGCACTATGCGATGTGAT
ACTAGAACAGACTTGATTTTTGCTTCCCGCGCGCAACCGGGCAGCTATTG
GCGTGTCACGCATATACGATGGAATATGCTAACGGTTCTGCCTCAGCCAG
CGCTACA
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