DY259992

Overview
NameDY259992
Unique NameDY259992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1107
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_CHICK (60S ribosomal protein L15 (Fragment) OS=Gallus gallus GN=RPL15 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 6.459e-38
Identity = 63/109 (57.80%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  154 RPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H  IR +P  Q
Sbjct:    2 RPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKRIRRNPDTQ 110          

HSP 2 Score: 53.9138 bits (128), Expect = 6.459e-38
Identity = 28/53 (52.83%), Postives = 31/53 (58.49%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI KPVHKHRE+RGLTSAG+K RGL GKG              W+R  T
Sbjct:  107 PDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 158          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_QUESU (60S ribosomal protein L15 OS=Quercus suber GN=RPL15 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 5.904e-35
Identity = 73/123 (59.35%), Postives = 85/123 (69.11%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINE 402
            MGAYKYV+E+ R+KQSDV+RFL RVRCWEYRQ   I R +RP+RPDKARRLGYKAKQ                       +GKP NQG+ QLKFQRS RS AEER  R+ GGL++LNSYWI +
Sbjct:    1 MGAYKYVAEMERRKQSDVLRFLLRVRCWEYRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRVRVRRGNRKRPAPKGATFGKPVNQGINQLKFQRSLRSTAEERVARRCGGLRILNSYWITK 123          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METJA (50S ribosomal protein L15e OS=Methanocaldococcus jannaschii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.484e-33
Identity = 60/147 (40.82%), Postives = 84/147 (57.14%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            MG YKY+ E W++ +   +R L   R  ++R+ P++VR+ RPTR D+AR LGYK KQ                         KP   GV ++   +S + +AEERA RK   ++VLNSYW+ ED  +K++EVILVD  H AI+ DPQ
Sbjct:    1 MGIYKYIREAWKRPKESYVRQLLWERLQQWRREPAVVRIERPTRLDRARALGYKPKQGIIVVRVRVRRGGLRKPRPKNSK--KPATLGVNKITMGKSIQRIAEERAARKYPNMEVLNSYWVGEDGKHKWYEVILVDPYHPAIKADPQ 145          

HSP 2 Score: 49.6766 bits (117), Expect = 1.484e-33
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            P++NW+C   H+ R  RGLTSAGKK RGLR KG
Sbjct:  144 PQLNWLCTGKHRGRAFRGLTSAGKKGRGLRNKG 176          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_STAMF (50S ribosomal protein L15e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.239e-31
Identity = 59/145 (40.69%), Postives = 81/145 (55.86%), Query Frame = 1
Query:   37 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDP 471
            G Y Y+++LW++     M  L R R  ++R+ P+I+R+ +PTR D+AR LGYKAKQ                         +P   G+      +S R +AEERA RK   L+VLNSY++ ED  YK++EVILVD  H AI NDP
Sbjct:    4 GMYHYIAQLWKRPYEGDMLTLMRQRLIKWRREPAIIRIEKPTRLDRARALGYKAKQGFIIVRVRVRKGGLRKQRPNK--GRRPKRMGIYGFAPSKSLRLIAEERAARKYPNLEVLNSYYVGEDGNYKWYEVILVDPHHPAICNDP 146          

HSP 2 Score: 48.521 bits (114), Expect = 2.239e-31
Identity = 26/53 (49.06%), Postives = 31/53 (58.49%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLR-GKGSPCTTRHDLQEGQPWKRNQ 625
            P I WIC+  H+ R  RGLTSAGKK RGLR  +G   T ++       WKR Q
Sbjct:  146 PDIKWICEKQHRRRVFRGLTSAGKKMRGLRKSRGLKYTIKY------KWKRKQ 192          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_PYRHO (50S ribosomal protein L15e OS=Pyrococcus horikoshii GN=rpl15e PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.925e-31
Identity = 58/147 (39.46%), Postives = 84/147 (57.14%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            MG YKY+ E W+  +   +  L + R  ++R+ PS+VR+ RPTR D+AR LGY+AKQ                         KP+  G  +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKQRMIKWRREPSVVRIERPTRLDRARALGYQAKQGYIIVRVRVRRGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPK 145          

HSP 2 Score: 45.4394 bits (106), Expect = 2.925e-31
Identity = 22/33 (66.67%), Postives = 23/33 (69.70%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            P+I WI    HK R  RGLTSAGKK RGLR KG
Sbjct:  144 PKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKG 176          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15_PIG (60S ribosomal protein L15 (Fragment) OS=Sus scrofa GN=RPL15 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.949e-31
Identity = 52/98 (53.06%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  187 GYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQ 480
            GYKAKQ                       YGKP + GV QLKF RS +SV EERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P  Q
Sbjct:    1 GYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVXEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQ 98          

HSP 2 Score: 53.9138 bits (128), Expect = 2.949e-31
Identity = 28/53 (52.83%), Postives = 31/53 (58.49%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGSPCTTRHDLQEGQPWKRNQT 628
            P   WI KPVHKHRE+RGLTSAG+K RGL GKG              W+R  T
Sbjct:   95 PDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 146          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_THEON (50S ribosomal protein L15e OS=Thermococcus onnurineus (strain NA1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.809e-31
Identity = 58/147 (39.46%), Postives = 84/147 (57.14%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            MG YKY+ E W+  +   +  L + R  ++R+ P +VRV RPTR D+AR LGY+AKQ                         KP+  G+ +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKKRMIKWRREPVVVRVERPTRLDRARSLGYQAKQGYVIVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPK 145          

HSP 2 Score: 45.8246 bits (107), Expect = 3.809e-31
Identity = 21/33 (63.64%), Postives = 23/33 (69.70%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            P+I WI    HK R  RGLTSAG+K RGLR KG
Sbjct:  144 PKIAWIAGKAHKGRVFRGLTSAGRKSRGLRNKG 176          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_THEGJ (50S ribosomal protein L15e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.809e-31
Identity = 57/147 (38.78%), Postives = 84/147 (57.14%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            MG YKY+ E W+  +   +  L + R  ++R+ P +VR+ RPTR D+AR LGY+AKQ                         KP+  G+ +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKKRMIKWRREPVVVRIERPTRLDRARSLGYQAKQGYVVVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPK 145          

HSP 2 Score: 46.2098 bits (108), Expect = 3.809e-31
Identity = 22/33 (66.67%), Postives = 23/33 (69.70%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            P+I WI    HK R  RGLTSAGKK RGLR KG
Sbjct:  144 PKIAWITGKAHKGRVFRGLTSAGKKGRGLRNKG 176          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_PYRAB (50S ribosomal protein L15e OS=Pyrococcus abyssi GN=rpl15e PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.459e-31
Identity = 57/147 (38.78%), Postives = 84/147 (57.14%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            MG YKY+ E W+  +   +  L + R  ++R+ P++VR+ RPTR D+AR LGY+AKQ                         KP+  G  +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKQRMIKWRREPAVVRIERPTRLDRARALGYQAKQGYVIVRVRVRRGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPK 145          

HSP 2 Score: 45.4394 bits (106), Expect = 6.459e-31
Identity = 22/33 (66.67%), Postives = 23/33 (69.70%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            P+I WI    HK R  RGLTSAGKK RGLR KG
Sbjct:  144 PKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKG 176          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METM7 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.411e-31
Identity = 56/145 (38.62%), Postives = 83/145 (57.24%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            M  Y YV E W+   +  ++ LQ  R  ++R+ PS++RV RPTR D+AR LGYKAKQ                         KP+  G+ ++   +S + +AEERA +K   L+VLNSYW+ +D   K++EVILVD+ H +I++D
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSD 143          

HSP 2 Score: 46.2098 bits (108), Expect = 8.411e-31
Identity = 21/30 (70.00%), Postives = 22/30 (73.33%), Query Frame = 2
Query:  479 NWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            NW+CK  HK R  RGLTSAGKK RGL  KG
Sbjct:  147 NWLCKGTHKGRATRGLTSAGKKGRGLMYKG 176          
The following BLAST results are available for this feature:
BLAST of DY259992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL15_CHICK6.459e-3857.8060S ribosomal protein L15 (Fragment) OS=Gallus gal... [more]
RL15_QUESU5.904e-3559.3560S ribosomal protein L15 OS=Quercus suber GN=RPL1... [more]
RL15E_METJA1.484e-3340.8250S ribosomal protein L15e OS=Methanocaldococcus j... [more]
RL15E_STAMF2.239e-3140.6950S ribosomal protein L15e OS=Staphylothermus mari... [more]
RL15E_PYRHO2.925e-3139.4650S ribosomal protein L15e OS=Pyrococcus horikoshi... [more]
RL15_PIG2.949e-3153.0660S ribosomal protein L15 (Fragment) OS=Sus scrofa... [more]
RL15E_THEON3.809e-3139.4650S ribosomal protein L15e OS=Thermococcus onnurin... [more]
RL15E_THEGJ3.809e-3138.7850S ribosomal protein L15e OS=Thermococcus gammato... [more]
RL15E_PYRAB6.459e-3138.7850S ribosomal protein L15e OS=Pyrococcus abyssi GN... [more]
RL15E_METM78.411e-3138.6250S ribosomal protein L15e OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259992 ID=DY259992; Name=DY259992; organism=Citrus clementina; type=EST; length=1107bp
CATCACAGCACCCTTTAGCTCGACGATCGAACAATGGGTGCATACAAGTA
CGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTCTTGC
AGAGGGTGAGGTGCTGGGAGTACCGTCAGCACCCTTCCATCGTCCGCGTC
ACCCGTCCCACTCGCCCCGACAAGGCTCGCCGCTTGGGCTACAAGGCCAA
GCAGGGTTATGTCGTTTATCGTGTGCGTGTAAGACGTGGAGGACGAAAGA
GACCAGTTCCCAAGGGTATTGTATATGGTAAACCGACAAACCAGGGTGTC
ACTCAGCTTAAATTCCAGCGCAGCAAGCGTTCAGTTGCTGAGGAACGTGC
CGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCAACTCATACTGGATCAATG
AGGATTCAACTTACAAGTACTTTGAGGTAATCCTGGTGGATGCTGCCCAC
AATGCTATCCGCAATGACCCCCAGGATCAACTGGATCTGTAAGCCTGTCC
ACAAGCACAGGGAGCTTCGTGGACTCACTTCTGCTGGGAAGAAGTACAGA
GGTCTCCGAGGAAAGGGGTCACCTTGCACCACAAGGCACGACCTTCAAGA
AGGGCAACCCTGGAAGAGGAACCAGACTCCTCTCTCTCAGGCGTTACCGT
TAAACCTTCTGGATTGGTTACTTGGTGTTTTTTCACATTTATCAACCTAG
TTTAAATTCCGTTGGAGTTTGGAACCCCGAAAACAAGGTGTTTTTGGTTA
GTTTTTTGCTGCCACACGGGTCTAATTTTTGATTTCACTTGGGCCAATTG
AAATTTTGTAAATTCCAAAGGATTTGTTTTATCCAAAAAAATACACTCCA
GAATTGTGGGGGGGACACGTTCCCTGCCCGGCCCAAAAAAAATAAAAAAA
AAAACCGCCCTTTTTCTTGCGCACATTTTGGTTCATAAAAATAAAACCAT
ATACAGACGAAGTTGTGGAGCGACGGGTCAGGGGCACTATGCGATGTGAT
ACTAGAACAGACTTGATTTTTGCTTCCCGCGCGCAACCGGGCAGCTATTG
GCGTGTCACGCATATACGATGGAATATGCTAACGGTTCTGCCTCAGCCAG
CGCTACA
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