DY259992

Overview
NameDY259992
Unique NameDY259992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1107
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METM6 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.411e-31
Identity = 56/145 (38.62%), Postives = 83/145 (57.24%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            M  Y YV E W+   +  ++ LQ  R  ++R+ PS++RV RPTR D+AR LGYKAKQ                         KP+  G+ ++   +S + +AEERA +K   L+VLNSYW+ +D   K++EVILVD+ H +I++D
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSD 143          

HSP 2 Score: 46.2098 bits (108), Expect = 8.411e-31
Identity = 21/30 (70.00%), Postives = 22/30 (73.33%), Query Frame = 2
Query:  479 NWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            NW+CK  HK R  RGLTSAGKK RGL  KG
Sbjct:  147 NWLCKGTHKGRATRGLTSAGKKGRGLMYKG 176          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_PYRFU (50S ribosomal protein L15e OS=Pyrococcus furiosus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.426e-30
Identity = 57/147 (38.78%), Postives = 83/147 (56.46%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            MG YKY+ E W+  +   +  L + R  ++R+ P +VR+ RPTR D+AR LGY+AKQ                         KP+  G  +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRVRKGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPK 145          

HSP 2 Score: 45.4394 bits (106), Expect = 1.426e-30
Identity = 22/33 (66.67%), Postives = 23/33 (69.70%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            P+I WI    HK R  RGLTSAGKK RGLR KG
Sbjct:  144 PKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKG 176          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METM5 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.101e-30
Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            M  Y YV E W+   +  ++ LQ  R  ++R+ PS++R+ RPTR D+AR LGYKAKQ                         KP   G+ ++   +S + +AEERA +K   ++VLNSYW+ +D   K++EVILVD    +I+ND
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWARMQDWRKEPSVIRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPATMGINKITMAKSIQRIAEERAAKKYPNMEVLNSYWVGQDGKQKWYEVILVDPCQPSIKND 143          

HSP 2 Score: 45.8246 bits (107), Expect = 4.101e-30
Identity = 21/30 (70.00%), Postives = 22/30 (73.33%), Query Frame = 2
Query:  479 NWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            NW+CK  HK R  RGLTSAGKK RGL  KG
Sbjct:  147 NWLCKGTHKGRVTRGLTSAGKKGRGLMYKG 176          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_DESK1 (50S ribosomal protein L15e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 9.026e-30
Identity = 61/143 (42.66%), Postives = 81/143 (56.64%), Query Frame = 1
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDP 471
            Y Y++E W++K  + +  L R R  E+R+ PS+VR+ +PTR DKAR LGYKAK                          +P   GV      +S R +AEERA RK  GL+VLNSY++ ED  YK++EVILVD  H +I NDP
Sbjct:    6 YHYIAEAWKEKSRE-LEALIRQRLIEWRREPSVVRLEKPTRLDKARALGYKAKVGFIIVRVRVRKGGQRKPRPDS--GRRPKRMGVYGYAPAKSLRLIAEERAARKFPGLEVLNSYYVAEDGRYKWYEVILVDPHHPSICNDP 145          

HSP 2 Score: 47.3654 bits (111), Expect = 9.026e-30
Identity = 20/30 (66.67%), Postives = 24/30 (80.00%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLR 559
            P +NWIC+P ++ R  RGLTSAGKK RGLR
Sbjct:  145 PDVNWICEPQNRGRVFRGLTSAGKKMRGLR 174          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_PYRKO (50S ribosomal protein L15e OS=Pyrococcus kodakaraensis GN=rpl15e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.535e-29
Identity = 56/147 (38.10%), Postives = 83/147 (56.46%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            MG YKY+ E W+  +   +  L + R  ++R+ P + R+ RPTR D+AR LGY+AKQ                         KP+  G+ +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKKRMIQWRRDPVVKRIERPTRLDRARSLGYQAKQGYVVVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPK 145          

HSP 2 Score: 43.1282 bits (100), Expect = 1.535e-29
Identity = 20/33 (60.61%), Postives = 22/33 (66.67%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            P+I WI    HK R  RGLTSAGK+ RGL  KG
Sbjct:  144 PKIAWIAGKAHKGRVFRGLTSAGKRSRGLLNKG 176          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_AERPE (50S ribosomal protein L15e OS=Aeropyrum pernix GN=rpl15e PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.395e-29
Identity = 60/147 (40.82%), Postives = 80/147 (54.42%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            +  Y Y++  W+K    +   L + R  E+R+ PSI+RV +PTR D+AR LGYKAKQ                         +P   GV      +S R +AEERA RK   L VLNSY++ ED  YK++EVILVD  H AI+NDP+
Sbjct:    3 LSMYHYIAREWKKPYEGLHGELMKARLLEWRRQPSILRVEKPTRLDRARALGYKAKQGVIVARVRVRKGGRRKPRPNK--GRRPKRMGVYGFAPAKSLRLIAEERAQRKYPNLVVLNSYYVGEDGRYKWYEVILVDPNHPAIKNDPE 147          

HSP 2 Score: 43.5134 bits (101), Expect = 4.395e-29
Identity = 19/30 (63.33%), Postives = 21/30 (70.00%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLR 559
            P +NW+    HK R  RGLTSAGKK RGLR
Sbjct:  146 PELNWVTTGKHKGRPFRGLTSAGKKMRGLR 175          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METTH (50S ribosomal protein L15e OS=Methanobacterium thermoautotrophicum GN=rpl15e PE=3 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 9.756e-29
Identity = 56/144 (38.89%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            Y+YV + W+  +   +R L   R  ++R+ P I R+ RPTR D+AR LGY+AK                          +PT  GV ++   +S + +AEER  RK   ++VLNSYW+ ED  YK++EVILVD  H AI+NDP+
Sbjct:    3 YRYVKDAWKNPKDSYVRELMWERAPKWRRDPVIKRIERPTRIDRARALGYRAKPGYIVVRTRVRRGSQRKTRFK--AGRRPTRMGVKKITTAKSIKRIAEERVARKYPNMEVLNSYWVWEDGKYKFYEVILVDPNHLAIKNDPK 144          

HSP 2 Score: 43.1282 bits (100), Expect = 9.756e-29
Identity = 19/33 (57.58%), Postives = 22/33 (66.67%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            P+I WIC   H+ R  RGL S GKK RGLR +G
Sbjct:  143 PKIYWICVKQHRGRVFRGLISEGKKNRGLRNRG 175          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METST (50S ribosomal protein L15e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.364e-27
Identity = 55/143 (38.46%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            YKY+ E W+      ++ L R R  ++R+ P I+R+ +PTR D+ARRLGYKAK                         G+ P   GV ++  ++S + +AEER  RK   L+VLNSYW+ ED   KY+EVILVD    +I++D
Sbjct:    7 YKYMKEAWKNPDESYVKELMRERLPKWRRQPVIIRIDKPTRIDRARRLGYKAKTGYVVARIRVRRGSRRKSRFKN---GRDPKRMGVNKISGEKSIQRMAEERVARKYPNLEVLNSYWVWEDGKAKYYEVILVDPQCPSIQHD 146          

HSP 2 Score: 46.595 bits (109), Expect = 1.364e-27
Identity = 21/32 (65.62%), Postives = 22/32 (68.75%), Query Frame = 2
Query:  473 RINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            +INWIC   H  R  RGLTSAGKK RGL  KG
Sbjct:  148 KINWICSKKHTRRAFRGLTSAGKKGRGLNKKG 179          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METMP (50S ribosomal protein L15e OS=Methanococcus maripaludis GN=rpl15e PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.006e-27
Identity = 53/145 (36.55%), Postives = 81/145 (55.86%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            M  Y YV E W+   +  ++ LQ  R  ++R+ PS++R+ RPTR D+AR LGYKAKQ                         KP   G+ ++   +S + +AEERA ++   ++VLNSYW+ +D   K++E+ILVD  H +I+ND
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWARMQDWRKEPSVLRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPATLGINKITMAKSIQRIAEERAAKRYPNMEVLNSYWVGQDGKQKWYEIILVDPCHPSIKND 143          

HSP 2 Score: 36.1946 bits (82), Expect = 3.006e-27
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 2
Query:  479 NWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            +W+    HK R  RGLTSAGKK RGL  KG
Sbjct:  147 SWLSTGNHKGRANRGLTSAGKKGRGLMYKG 176          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METKA (50S ribosomal protein L15e OS=Methanopyrus kandleri GN=rpl15e PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 5.092e-27
Identity = 54/142 (38.03%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            YKY  E W++ +   +  L + R  ++R+ PS+ R+ RPTR ++ARRLGY+AK                          +P   G  +    +SK+ +AEERA RK   L+VLNSYW+ ED  YKY+EVI+VD  H  I++D
Sbjct:    7 YKYQREAWKRPKDSYVGELLKERLPKWRKGPSVQRIKRPTRIERARRLGYRAKPGYVVVRVRVPKGGRRKSRPKK--GRRPKRMGKNKFSPGKSKQWIAEERAQRKYPNLEVLNSYWVGEDGQYKYYEVIMVDPYHPQIKSD 146          

HSP 2 Score: 43.5134 bits (101), Expect = 5.092e-27
Identity = 20/32 (62.50%), Postives = 22/32 (68.75%), Query Frame = 2
Query:  473 RINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            RINWIC+   K R  RG T AGKK RGLR +G
Sbjct:  148 RINWICQKSQKGRVFRGKTGAGKKARGLRKRG 179          
The following BLAST results are available for this feature:
BLAST of DY259992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL15E_METM68.411e-3138.6250S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_PYRFU1.426e-3038.7850S ribosomal protein L15e OS=Pyrococcus furiosus ... [more]
RL15E_METM54.101e-3037.2450S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_DESK19.026e-3042.6650S ribosomal protein L15e OS=Desulfurococcus kamc... [more]
RL15E_PYRKO1.535e-2938.1050S ribosomal protein L15e OS=Pyrococcus kodakarae... [more]
RL15E_AERPE4.395e-2940.8250S ribosomal protein L15e OS=Aeropyrum pernix GN=... [more]
RL15E_METTH9.756e-2938.8950S ribosomal protein L15e OS=Methanobacterium the... [more]
RL15E_METST1.364e-2738.4650S ribosomal protein L15e OS=Methanosphaera stadt... [more]
RL15E_METMP3.006e-2736.5550S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METKA5.092e-2738.0350S ribosomal protein L15e OS=Methanopyrus kandler... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259992 ID=DY259992; Name=DY259992; organism=Citrus clementina; type=EST; length=1107bp
CATCACAGCACCCTTTAGCTCGACGATCGAACAATGGGTGCATACAAGTA
CGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTCTTGC
AGAGGGTGAGGTGCTGGGAGTACCGTCAGCACCCTTCCATCGTCCGCGTC
ACCCGTCCCACTCGCCCCGACAAGGCTCGCCGCTTGGGCTACAAGGCCAA
GCAGGGTTATGTCGTTTATCGTGTGCGTGTAAGACGTGGAGGACGAAAGA
GACCAGTTCCCAAGGGTATTGTATATGGTAAACCGACAAACCAGGGTGTC
ACTCAGCTTAAATTCCAGCGCAGCAAGCGTTCAGTTGCTGAGGAACGTGC
CGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCAACTCATACTGGATCAATG
AGGATTCAACTTACAAGTACTTTGAGGTAATCCTGGTGGATGCTGCCCAC
AATGCTATCCGCAATGACCCCCAGGATCAACTGGATCTGTAAGCCTGTCC
ACAAGCACAGGGAGCTTCGTGGACTCACTTCTGCTGGGAAGAAGTACAGA
GGTCTCCGAGGAAAGGGGTCACCTTGCACCACAAGGCACGACCTTCAAGA
AGGGCAACCCTGGAAGAGGAACCAGACTCCTCTCTCTCAGGCGTTACCGT
TAAACCTTCTGGATTGGTTACTTGGTGTTTTTTCACATTTATCAACCTAG
TTTAAATTCCGTTGGAGTTTGGAACCCCGAAAACAAGGTGTTTTTGGTTA
GTTTTTTGCTGCCACACGGGTCTAATTTTTGATTTCACTTGGGCCAATTG
AAATTTTGTAAATTCCAAAGGATTTGTTTTATCCAAAAAAATACACTCCA
GAATTGTGGGGGGGACACGTTCCCTGCCCGGCCCAAAAAAAATAAAAAAA
AAAACCGCCCTTTTTCTTGCGCACATTTTGGTTCATAAAAATAAAACCAT
ATACAGACGAAGTTGTGGAGCGACGGGTCAGGGGCACTATGCGATGTGAT
ACTAGAACAGACTTGATTTTTGCTTCCCGCGCGCAACCGGGCAGCTATTG
GCGTGTCACGCATATACGATGGAATATGCTAACGGTTCTGCCTCAGCCAG
CGCTACA
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