DY259992

Overview
NameDY259992
Unique NameDY259992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1107
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_HALSA (50S ribosomal protein L15e OS=Halobacterium salinarium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.200e-26
Identity = 56/143 (39.16%), Postives = 76/143 (53.15%), Query Frame = 1 
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTN-QGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            Y ++ E W       +  LQ  R  ++R+  +I RV RPTR DKAR LGYKAKQ                        G+ T  QGV ++   ++ + +AEERA RK   L+ LNSYW+ ED + K+FE IL+D  H AI+ND
Sbjct:    6 YSHIKEAWEDPDDGKLAELQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKA---GRRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQND 145

HSP 2 Score: 43.1282 bits (100), Expect = 4.200e-26
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 2 
Query:  476 INWICKPVHKHRELRGLTSAGKKYRGL--RGKGS 571
            +NWIC   HK+R  RG TSAG++ RGL  RGKG+
Sbjct:  148 LNWICDDSHKNRVFRGKTSAGRRARGLQNRGKGT 181
[Close]
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_HALS3 (50S ribosomal protein L15e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.200e-26
Identity = 56/143 (39.16%), Postives = 76/143 (53.15%), Query Frame = 1 
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTN-QGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            Y ++ E W       +  LQ  R  ++R+  +I RV RPTR DKAR LGYKAKQ                        G+ T  QGV ++   ++ + +AEERA RK   L+ LNSYW+ ED + K+FE IL+D  H AI+ND
Sbjct:    6 YSHIKEAWEDPDDGKLAELQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKA---GRRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQND 145

HSP 2 Score: 43.1282 bits (100), Expect = 4.200e-26
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 2 
Query:  476 INWICKPVHKHRELRGLTSAGKKYRGL--RGKGS 571
            +NWIC   HK+R  RG TSAG++ RGL  RGKG+
Sbjct:  148 LNWICDDSHKNRVFRGKTSAGRRARGLQNRGKGT 181
[Close]
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_HALWD (50S ribosomal protein L15e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.200e-26
Identity = 56/142 (39.44%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            Y ++ E W++     +  LQ  R  E+R   +IVR+ RPTR DKAR LGYKAKQ                         K   QGV +L  + S + +AEERA RK   L+ L SYW+ ED + K+ E+IL+D  H AI ND
Sbjct:    6 YSHIKEAWKQPGDGKLAELQWQRKQEWRDQGAIVRIDRPTRLDKARELGYKAKQGVIIARVAVRKGGARKKRFTSGRRSK--RQGVNRLGRRTSIQRIAEERAARKYPNLRTLASYWVGEDGSQKWHEIILIDPEHAAIEND 145

HSP 2 Score: 43.8986 bits (102), Expect = 4.200e-26
Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 2 
Query:  476 INWICKPVHKHRELRGLTSAGKKYRGL--RGKGSPCT 580
            +NWIC   HK R  RGLT+AG+  RGL  RGKG+  T
Sbjct:  148 LNWICDDTHKGRAFRGLTNAGRSNRGLQNRGKGAEHT 184
[Close]
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_META3 (50S ribosomal protein L15e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.467e-26
Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = 1 
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            M  YK+V E W+K     ++ LQ  R  ++R+ P++VRV +PTR D+AR LGYKAKQ                         KP    + ++   +S + +AEERA ++   L+VLNSY + ED   K++EVIL+D  H +I+ND
Sbjct:    1 MSMYKHVKEAWKKPSESYVKGLQWARMQDWRKEPTVVRVEKPTRIDRARSLGYKAKQGVIVARVAVRRGGLRKPRPKH--SKKPATMAMNKITMSKSIQRIAEERAAKRYPNLEVLNSYSVGEDGKRKWYEVILIDVNHPSIKND 143

HSP 2 Score: 36.5798 bits (83), Expect = 5.467e-26
Identity = 17/28 (60.71%), Postives = 19/28 (67.86%), Query Frame = 2 
Query:  485 ICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            +C   H +R  RGLTSAGKK RGL  KG
Sbjct:  149 LCTGKHTNRVFRGLTSAGKKGRGLMNKG 176
[Close]
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_HALLT (50S ribosomal protein L15e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.117e-26
Identity = 59/142 (41.55%), Postives = 76/142 (53.52%), Query Frame = 1 
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            Y ++ E WR  +   +  LQ  R  E+R   +I R+ RPTR DKAR LGYKAKQ                         K   QGV +L  ++S + ++EERA RK   L+VLNSYW+ ED + K+ EVILVD  H AI ND
Sbjct:    6 YSHIKEAWRSPKEGKLAELQWQRKQEWRDEGAIERIERPTRLDKARELGYKAKQGVVVARVSVRKGGSRKQRHKAGRRSK--RQGVNRLSRRKSIQRISEERASRKYRNLRVLNSYWVGEDGSQKWHEVILVDPNHPAIEND 145

HSP 2 Score: 37.7354 bits (86), Expect = 7.117e-26
Identity = 21/47 (44.68%), Postives = 25/47 (53.19%), Query Frame = 2 
Query:  476 INWICKPVHKHRELRGLTSAGKKYRGLRGKGS------PCTTRHDLQ 598
            + WI    HK R  RGLTSAG K RG R +G+      P  T +D Q
Sbjct:  148 LGWIASDDHKGRAFRGLTSAGTKGRGQRTRGTGTEKTRPSVTGNDRQ 194
[Close]
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_SULIY (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.236e-26
Identity = 54/147 (36.73%), Postives = 78/147 (53.06%), Query Frame = 1 
Query:   31 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDP 471
            T+  Y Y+   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP
Sbjct:    2 TLSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDP 144

HSP 2 Score: 43.1282 bits (100), Expect = 9.236e-26
Identity = 24/53 (45.28%), Postives = 29/53 (54.72%), Query Frame = 2 
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLR-GKGSPCTTRHDLQEGQPWKRNQ 625
            P   W+  P +++R  RGLTSAGKK RGLR  KG   T +H       W R Q
Sbjct:  144 PNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKH------KWSRKQ 190
[Close]
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_SULIN (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.236e-26
Identity = 54/147 (36.73%), Postives = 78/147 (53.06%), Query Frame = 1 
Query:   31 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDP 471
            T+  Y Y+   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP
Sbjct:    2 TLSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDP 144

HSP 2 Score: 43.1282 bits (100), Expect = 9.236e-26
Identity = 24/53 (45.28%), Postives = 29/53 (54.72%), Query Frame = 2 
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLR-GKGSPCTTRHDLQEGQPWKRNQ 625
            P   W+  P +++R  RGLTSAGKK RGLR  KG   T +H       W R Q
Sbjct:  144 PNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKH------KWSRKQ 190
[Close]
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_SULIM (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.236e-26
Identity = 54/147 (36.73%), Postives = 78/147 (53.06%), Query Frame = 1 
Query:   31 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDP 471
            T+  Y Y+   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP
Sbjct:    2 TLSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDP 144

HSP 2 Score: 43.1282 bits (100), Expect = 9.236e-26
Identity = 24/53 (45.28%), Postives = 29/53 (54.72%), Query Frame = 2 
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLR-GKGSPCTTRHDLQEGQPWKRNQ 625
            P   W+  P +++R  RGLTSAGKK RGLR  KG   T +H       W R Q
Sbjct:  144 PNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKH------KWSRKQ 190
[Close]
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_SULIL (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.236e-26
Identity = 54/147 (36.73%), Postives = 78/147 (53.06%), Query Frame = 1 
Query:   31 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDP 471
            T+  Y Y+   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP
Sbjct:    2 TLSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDP 144

HSP 2 Score: 43.1282 bits (100), Expect = 9.236e-26
Identity = 24/53 (45.28%), Postives = 29/53 (54.72%), Query Frame = 2 
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLR-GKGSPCTTRHDLQEGQPWKRNQ 625
            P   W+  P +++R  RGLTSAGKK RGLR  KG   T +H       W R Q
Sbjct:  144 PNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKH------KWSRKQ 190
[Close]
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_SULIK (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.236e-26
Identity = 54/147 (36.73%), Postives = 78/147 (53.06%), Query Frame = 1 
Query:   31 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDP 471
            T+  Y Y+   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP
Sbjct:    2 TLSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDP 144

HSP 2 Score: 43.1282 bits (100), Expect = 9.236e-26
Identity = 24/53 (45.28%), Postives = 29/53 (54.72%), Query Frame = 2 
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLR-GKGSPCTTRHDLQEGQPWKRNQ 625
            P   W+  P +++R  RGLTSAGKK RGLR  KG   T +H       W R Q
Sbjct:  144 PNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKH------KWSRKQ 190
The following BLAST results are available for this feature:
BLAST of DY259992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL15E_HALSA4.200e-2639.1650S ribosomal protein L15e OS=Halobacterium salina... [more]
RL15E_HALS34.200e-2639.1650S ribosomal protein L15e OS=Halobacterium salina... [more]
RL15E_HALWD4.200e-2639.4450S ribosomal protein L15e OS=Haloquadratum walsby... [more]
RL15E_META35.467e-2637.2450S ribosomal protein L15e OS=Methanococcus aeolic... [more]
RL15E_HALLT7.117e-2641.5550S ribosomal protein L15e OS=Halorubrum lacusprof... [more]
RL15E_SULIY9.236e-2636.7350S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIN9.236e-2636.7350S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIM9.236e-2636.7350S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIL9.236e-2636.7350S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIK9.236e-2636.7350S ribosomal protein L15e OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259992 ID=DY259992; Name=DY259992; organism=Citrus clementina; type=EST; length=1107bp
CATCACAGCACCCTTTAGCTCGACGATCGAACAATGGGTGCATACAAGTA
CGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTCTTGC
AGAGGGTGAGGTGCTGGGAGTACCGTCAGCACCCTTCCATCGTCCGCGTC
ACCCGTCCCACTCGCCCCGACAAGGCTCGCCGCTTGGGCTACAAGGCCAA
GCAGGGTTATGTCGTTTATCGTGTGCGTGTAAGACGTGGAGGACGAAAGA
GACCAGTTCCCAAGGGTATTGTATATGGTAAACCGACAAACCAGGGTGTC
ACTCAGCTTAAATTCCAGCGCAGCAAGCGTTCAGTTGCTGAGGAACGTGC
CGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCAACTCATACTGGATCAATG
AGGATTCAACTTACAAGTACTTTGAGGTAATCCTGGTGGATGCTGCCCAC
AATGCTATCCGCAATGACCCCCAGGATCAACTGGATCTGTAAGCCTGTCC
ACAAGCACAGGGAGCTTCGTGGACTCACTTCTGCTGGGAAGAAGTACAGA
GGTCTCCGAGGAAAGGGGTCACCTTGCACCACAAGGCACGACCTTCAAGA
AGGGCAACCCTGGAAGAGGAACCAGACTCCTCTCTCTCAGGCGTTACCGT
TAAACCTTCTGGATTGGTTACTTGGTGTTTTTTCACATTTATCAACCTAG
TTTAAATTCCGTTGGAGTTTGGAACCCCGAAAACAAGGTGTTTTTGGTTA
GTTTTTTGCTGCCACACGGGTCTAATTTTTGATTTCACTTGGGCCAATTG
AAATTTTGTAAATTCCAAAGGATTTGTTTTATCCAAAAAAATACACTCCA
GAATTGTGGGGGGGACACGTTCCCTGCCCGGCCCAAAAAAAATAAAAAAA
AAAACCGCCCTTTTTCTTGCGCACATTTTGGTTCATAAAAATAAAACCAT
ATACAGACGAAGTTGTGGAGCGACGGGTCAGGGGCACTATGCGATGTGAT
ACTAGAACAGACTTGATTTTTGCTTCCCGCGCGCAACCGGGCAGCTATTG
GCGTGTCACGCATATACGATGGAATATGCTAACGGTTCTGCCTCAGCCAG
CGCTACA
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