DY259992

Overview
NameDY259992
Unique NameDY259992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1107
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_SULIA (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.236e-26
Identity = 54/147 (36.73%), Postives = 78/147 (53.06%), Query Frame = 1
Query:   31 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDP 471
            T+  Y Y+   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP
Sbjct:    2 TLSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDP 144          

HSP 2 Score: 43.1282 bits (100), Expect = 9.236e-26
Identity = 24/53 (45.28%), Postives = 29/53 (54.72%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLR-GKGSPCTTRHDLQEGQPWKRNQ 625
            P   W+  P +++R  RGLTSAGKK RGLR  KG   T +H       W R Q
Sbjct:  144 PNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKH------KWSRKQ 190          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_SULAC (50S ribosomal protein L15e OS=Sulfolobus acidocaldarius GN=rpl15e PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.202e-25
Identity = 58/148 (39.19%), Postives = 80/148 (54.05%), Query Frame = 1
Query:   31 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            T+  Y Y+ + W+ K  D  R + R R  E+R+ P+I R+ RPTR ++AR LGYKAKQ                         +P   GV      +  R +AEERA RK   L+VL SY++ ED  YKY+EVI+VD +H  IR+DP+
Sbjct:    2 TLSMYHYIEQTWQNK--DWRRSILRKRLIEWRRQPAITRIDRPTRLNRARALGYKAKQGFVMVRVRVRRGGLNKPRPNS--GRRPKRMGVYGYGPSKGYRWIAEERAARKFPNLEVLGSYYVAEDGMYKYYEVIMVDYSHPVIRSDPE 145          

HSP 2 Score: 36.5798 bits (83), Expect = 1.202e-25
Identity = 20/53 (37.74%), Postives = 30/53 (56.60%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGL-RGKGSPCTTRHDLQEGQPWKRNQ 625
            P + W+   V++ R  RGLTSAG+K RGL + +G   T +      + WK+ Q
Sbjct:  144 PELKWLQDSVNRKRVFRGLTSAGQKSRGLTKSRGLKGTVQ------RKWKKKQ 190          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METHJ (50S ribosomal protein L15e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.043e-25
Identity = 58/147 (39.46%), Postives = 78/147 (53.06%), Query Frame = 1
Query:   31 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPT-NQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            T   Y YV + W+      ++ L   R  ++R+  SIVRV RPTR D+AR LGYKAKQ                      V G+ T   GV +    +S + +AEERA RK   ++VLNSYW+ ED   K++EVIL+D  H +I ND
Sbjct:    2 TKSMYAYVRDAWKIPDDTGVKALLWERMQDWRREGSIVRVRRPTRIDRARALGYKAKQGIVVVRVKVRRGGRRASRY---VRGRRTARMGVNRKTMGKSIQRIAEERACRKYPNMEVLNSYWVGEDGRQKWYEVILLDPHHPSIIND 145          

HSP 2 Score: 43.1282 bits (100), Expect = 2.043e-25
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 2
Query:  446 PTMLSAMTPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            P++++  T  +NWI KP H+ R  RGLTSAG K RG+R +G
Sbjct:  140 PSIINDKT--LNWISKPGHRGRSERGLTSAGVKGRGMRRRG 178          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_NATPD (50S ribosomal protein L15e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.863e-25
Identity = 57/142 (40.14%), Postives = 79/142 (55.63%), Query Frame = 1
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            Y ++ E W+  +   +  LQ  R  E+R   +I R+ RPTR DKAR LGYKAKQ                         K   QGV ++  +++ + +AEER+GRK   L+VLNSYW+ ED + K+FEVIL+D  H AI+ND
Sbjct:    6 YSHIREAWKTPKEGKLAELQWQRQQEWRDQGAIERIERPTRLDKARSLGYKAKQGVVVARVSVRKGTARKQRFKAGRRSK--RQGVNKITRRKNLQRIAEERSGRKFRNLRVLNSYWVGEDGSQKWFEVILLDPEHGAIQND 145          

HSP 2 Score: 33.113 bits (74), Expect = 5.863e-25
Identity = 17/37 (45.95%), Postives = 23/37 (62.16%), Query Frame = 2
Query:  476 INWICKPVHKHRELRGLTSAGKKYRG--LRGKGSPCT 580
            ++WIC    + R  RG TSAG++ RG   RGKG+  T
Sbjct:  148 LSWICDDSQRGRAYRGRTSAGQRGRGQQKRGKGTEHT 184          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_SULTO (50S ribosomal protein L15e OS=Sulfolobus tokodaii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.607e-25
Identity = 52/147 (35.37%), Postives = 77/147 (52.38%), Query Frame = 1
Query:   31 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDP 471
            T   Y Y+ + W   QSD  + + R R  E+R+ P++ R+ +PTR ++AR +GYKAKQ                         +P   GV      +  R +AEE+A RK   L+VL SY++ ED  YKY+E+I+VD  H  I++DP
Sbjct:    2 TSSMYNYIEQTW---QSDEWKKVLRQRLIEWRKSPAVERIDKPTRLNRARAIGYKAKQGFVVVRVRVRRGGLNKPRPNS--GRRPKRMGVYGYSPAKGYRWIAEEKAARKFPNLEVLGSYYVGEDGMYKYYEIIMVDPNHPVIKSDP 143          

HSP 2 Score: 41.9726 bits (97), Expect = 7.607e-25
Identity = 22/58 (37.93%), Postives = 31/58 (53.45%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRG-LRGKGSPCTTRHDLQEGQPWKRNQTPLSQ 640
            P + W+  P ++ R  RGLTSAGKK RG L+ +G   T +H       WK+ +    Q
Sbjct:  143 PNLKWLQDPANRKRVFRGLTSAGKKARGLLKSRGLKGTVKH------KWKKKEKEREQ 194          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_ARCFU (50S ribosomal protein L15e OS=Archaeoglobus fulgidus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.931e-25
Identity = 55/144 (38.19%), Postives = 79/144 (54.86%), Query Frame = 1
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            Y Y+ E W++     +  L   R  ++R+ P++VR+ RPTR D+AR LGYKAK+                         K     V +   +++ + +AEERA RK   ++VLNSYW+ ED  YK+FEVILVD  H AI++DPQ
Sbjct:    5 YAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNK--GRKSKGLMVNRRTPKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQ 146          

HSP 2 Score: 36.1946 bits (82), Expect = 9.931e-25
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            P+++W+ +   + R  RGLTSAG+K RGLR KG
Sbjct:  145 PQLSWVSRT--RGRVYRGLTSAGRKARGLRRKG 175          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_SULSO (50S ribosomal protein L15e OS=Sulfolobus solfataricus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.677e-24
Identity = 52/147 (35.37%), Postives = 76/147 (51.70%), Query Frame = 1
Query:   34 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            +  Y Y+   W  ++       QR+  W  R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  R +AEERA RK   L+VL SY++ ED  YKY+E+++VD +H  I++DP+
Sbjct:    3 LSMYHYIENTWNSEEWKKSVLRQRLIKW--RKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYSPAKGYRWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIVMVDPSHPVIKSDPK 145          

HSP 2 Score: 41.2022 bits (95), Expect = 1.677e-24
Identity = 23/53 (43.40%), Postives = 30/53 (56.60%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLR-GKGSPCTTRHDLQEGQPWKRNQ 625
            P+  W+  P +++R  RGLTSAGKK RGLR  +G   T R+       W R Q
Sbjct:  144 PKHKWLQDPSNRNRVFRGLTSAGKKVRGLRKSRGLKGTVRY------KWNRKQ 190          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_THEAC (50S ribosomal protein L15e OS=Thermoplasma acidophilum GN=rpl15e PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.848e-24
Identity = 57/146 (39.04%), Postives = 79/146 (54.11%), Query Frame = 1
Query:   37 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDP 471
            G Y+ V E W+  +   +  L + R  E+R  PSIVR+  PTR D+AR LG+K+K                      I+ G+ P      +L  ++S + +AEERA  K   ++VLNSY++ ED  YKYFEVILVD +H  I NDP
Sbjct:    5 GLYQAVREEWKSLKKSEIYDLVKKRMIEWRHGPSIVRLEHPTRIDRARALGFKSKDGFIVVRSRVRRGGSNREK---IMGGRRPRRMAYNKLTRKKSLKLIAEERAADKYPNMEVLNSYYVGEDGLYKYFEVILVDRSHPNIFNDP 147          

HSP 2 Score: 38.5058 bits (88), Expect = 2.848e-24
Identity = 18/30 (60.00%), Postives = 21/30 (70.00%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGLR 559
            P I+WI +P +  R  RGLTSAG K RGLR
Sbjct:  147 PHISWISEPQNTGRVYRGLTSAGYKVRGLR 176          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METBU (50S ribosomal protein L15e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.823e-24
Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = 1
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            Y Y+ + W+      +R L+  R   +R+  S+ RV RPTR D+AR LGYKAKQ                      + G+ T   G  ++   +S + ++EERA RK   ++VLNSYW+ ED   K++EVILVD +H  I++D
Sbjct:    6 YGYIRDAWKNPDETYVRDLRWERLQVWRKEGSVTRVERPTRIDRARSLGYKAKQGIVVARVKVRRGSMRKSRY---IRGRRTQHTGKNKITVGKSIQRISEERAARKYPNMEVLNSYWVGEDGKQKWYEVILVDPSHPVIKSD 145          

HSP 2 Score: 39.6614 bits (91), Expect = 4.823e-24
Identity = 16/32 (50.00%), Postives = 22/32 (68.75%), Query Frame = 2
Query:  476 INWICKPVHKHRELRGLTSAGKKYRGLRGKGS 571
            +NWIC   H  R  RG TSAG+K RG++ +G+
Sbjct:  148 LNWICGKAHSGRVFRGKTSAGRKGRGMQTRGT 179          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_UNCMA (50S ribosomal protein L15e OS=Uncultured methanogenic archaeon RC-I GN=rpl15e PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.280e-24
Identity = 50/143 (34.97%), Postives = 76/143 (53.15%), Query Frame = 1
Query:   40 AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            AY Y+ + W+      +  L   R  E+R+ P++V++ RPTR D+AR LGYKAKQ                         K  + G+  L  + S + +AE RA RK   ++VLNSYW+ +D  +K++E+ILVD  H +I +D
Sbjct:    5 AYSYIRDAWKNPSKTYVGELFWERLQEWRKEPTVVKIDRPTRLDRARALGYKAKQGIIVARAHVRRGGRRKSRYSR--GRKSKHMGLRTLTRRTSIQRMAEVRASRKFPNMEVLNSYWVGQDGKHKWYEIILVDPHHPSIASD 145          

HSP 2 Score: 41.2022 bits (95), Expect = 6.280e-24
Identity = 23/50 (46.00%), Postives = 26/50 (52.00%), Query Frame = 2
Query:  461 AMTPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGS------PCTTRHD 592
            A    ++WI K  H+ R  RGLTSAGKK RG R KG       P    HD
Sbjct:  143 ASDKNLSWITKGTHRGRAERGLTSAGKKGRGQRRKGKGTEKNYPSVQAHD 192          
The following BLAST results are available for this feature:
BLAST of DY259992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL15E_SULIA9.236e-2636.7350S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULAC1.202e-2539.1950S ribosomal protein L15e OS=Sulfolobus acidocald... [more]
RL15E_METHJ2.043e-2539.4650S ribosomal protein L15e OS=Methanospirillum hun... [more]
RL15E_NATPD5.863e-2540.1450S ribosomal protein L15e OS=Natronomonas pharaon... [more]
RL15E_SULTO7.607e-2535.3750S ribosomal protein L15e OS=Sulfolobus tokodaii ... [more]
RL15E_ARCFU9.931e-2538.1950S ribosomal protein L15e OS=Archaeoglobus fulgid... [more]
RL15E_SULSO1.677e-2435.3750S ribosomal protein L15e OS=Sulfolobus solfatari... [more]
RL15E_THEAC2.848e-2439.0450S ribosomal protein L15e OS=Thermoplasma acidoph... [more]
RL15E_METBU4.823e-2436.3650S ribosomal protein L15e OS=Methanococcoides bur... [more]
RL15E_UNCMA6.280e-2434.9750S ribosomal protein L15e OS=Uncultured methanoge... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259992 ID=DY259992; Name=DY259992; organism=Citrus clementina; type=EST; length=1107bp
CATCACAGCACCCTTTAGCTCGACGATCGAACAATGGGTGCATACAAGTA
CGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTCTTGC
AGAGGGTGAGGTGCTGGGAGTACCGTCAGCACCCTTCCATCGTCCGCGTC
ACCCGTCCCACTCGCCCCGACAAGGCTCGCCGCTTGGGCTACAAGGCCAA
GCAGGGTTATGTCGTTTATCGTGTGCGTGTAAGACGTGGAGGACGAAAGA
GACCAGTTCCCAAGGGTATTGTATATGGTAAACCGACAAACCAGGGTGTC
ACTCAGCTTAAATTCCAGCGCAGCAAGCGTTCAGTTGCTGAGGAACGTGC
CGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCAACTCATACTGGATCAATG
AGGATTCAACTTACAAGTACTTTGAGGTAATCCTGGTGGATGCTGCCCAC
AATGCTATCCGCAATGACCCCCAGGATCAACTGGATCTGTAAGCCTGTCC
ACAAGCACAGGGAGCTTCGTGGACTCACTTCTGCTGGGAAGAAGTACAGA
GGTCTCCGAGGAAAGGGGTCACCTTGCACCACAAGGCACGACCTTCAAGA
AGGGCAACCCTGGAAGAGGAACCAGACTCCTCTCTCTCAGGCGTTACCGT
TAAACCTTCTGGATTGGTTACTTGGTGTTTTTTCACATTTATCAACCTAG
TTTAAATTCCGTTGGAGTTTGGAACCCCGAAAACAAGGTGTTTTTGGTTA
GTTTTTTGCTGCCACACGGGTCTAATTTTTGATTTCACTTGGGCCAATTG
AAATTTTGTAAATTCCAAAGGATTTGTTTTATCCAAAAAAATACACTCCA
GAATTGTGGGGGGGACACGTTCCCTGCCCGGCCCAAAAAAAATAAAAAAA
AAAACCGCCCTTTTTCTTGCGCACATTTTGGTTCATAAAAATAAAACCAT
ATACAGACGAAGTTGTGGAGCGACGGGTCAGGGGCACTATGCGATGTGAT
ACTAGAACAGACTTGATTTTTGCTTCCCGCGCGCAACCGGGCAGCTATTG
GCGTGTCACGCATATACGATGGAATATGCTAACGGTTCTGCCTCAGCCAG
CGCTACA
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