DY259992

Overview
NameDY259992
Unique NameDY259992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1107
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METMJ (50S ribosomal protein L15e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.344e-23
Identity = 54/142 (38.03%), Postives = 74/142 (52.11%), Query Frame = 1
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            Y YV E W++     ++ L   R   +R+  SIVRV  PTR D+AR LGYKAKQ                         +    G+ +L   +S + +AEERA RK   ++ LNSYW+ ED   K+FEVILVD  H +I++D
Sbjct:    6 YAYVREAWKRPDRSEVKALLWERLQTWRREGSIVRVEHPTRIDRARSLGYKAKQGIVVVRVKIRRGGRRKPRYTR--GRRSARMGMRRLTPAKSLQRMAEERASRKFPNMEALNSYWVGEDGRSKWFEVILVDGHHPSIKSD 145          

HSP 2 Score: 37.7354 bits (86), Expect = 2.344e-23
Identity = 16/29 (55.17%), Postives = 20/29 (68.97%), Query Frame = 2
Query:  482 WICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            W+  PVH+ R  RG TSAG K RG+R +G
Sbjct:  150 WLANPVHRGRAERGKTSAGMKGRGMRTRG 178          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METAC (50S ribosomal protein L15e OS=Methanosarcina acetivorans GN=rpl15e PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.481e-22
Identity = 52/143 (36.36%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            Y YV + W+      +  L+  R   +R+  S+ R+ RPTR D+AR LGYKAKQ                        G+ T + G  ++    S + +AE RA R+   L+VLNSYW+ ED  +K+FEVILVD  H  I++D
Sbjct:    6 YGYVRDAWKNPDETYVNELRWERLQVWRKQGSVTRIERPTRIDRARSLGYKAKQGIVVVRVNVRRGGLGHVRPNR---GRRTQKMGKNKVSGGMSIQRIAEVRADRRYPNLEVLNSYWVGEDGKHKWFEVILVDPHHPVIKSD 145          

HSP 2 Score: 40.4318 bits (93), Expect = 1.481e-22
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 2
Query:  476 INWICKPVHKHRELRGLTSAGKKYRGL--RGKGSPCT 580
            +NW+C P  + R  RG TSAG+K RG+  RGKG+  T
Sbjct:  148 LNWVCDPSSRGRATRGKTSAGRKGRGMATRGKGTEKT 184          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_HALMA (50S ribosomal protein L15e OS=Haloarcula marismortui GN=rpl15e PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.507e-22
Identity = 54/143 (37.76%), Postives = 73/143 (51.05%), Query Frame = 1
Query:   40 AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            AY Y+ + W+      +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ                         K   QGVT++  ++  + VAEERA R    L+VLNSY + +D   K+ EVIL+D  H AI+ND
Sbjct:    5 AYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQND 145          

HSP 2 Score: 37.7354 bits (86), Expect = 2.507e-22
Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 2
Query:  476 INWICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            ++WIC      R  RGLT AG++ RGL GKG
Sbjct:  148 LSWICADDQADRVFRGLTGAGRRNRGLSGKG 178          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METMA (50S ribosomal protein L15e OS=Methanosarcina mazei GN=rpl15e PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.521e-22
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            Y YV + W+      +  L+  R   +R+  S+ R+ RPTR D+AR LGYKAKQ                        G+ T + G  ++    S + +AE RA RK   L+VLNSYW+ ED  +K+FEVILVD  H  I++D
Sbjct:    6 YGYVRDAWKNPDETYVNELRWERLQVWRKQGSVTRIERPTRIDRARSLGYKAKQGIVVVRVNVRRGGLGHVRPNR---GRRTQKMGKNKVSGGMSIQRIAEARADRKYPNLEVLNSYWVGEDGKHKWFEVILVDPHHPVIKSD 145          

HSP 2 Score: 36.965 bits (84), Expect = 5.521e-22
Identity = 19/37 (51.35%), Postives = 24/37 (64.86%), Query Frame = 2
Query:  476 INWICKPVHKHRELRGLTSAGKKYRGL--RGKGSPCT 580
            +NWIC    + R  RG TSAG+K RG+  RGKG+  T
Sbjct:  148 LNWICDASIRGRATRGKTSAGRKGRGMSTRGKGTEKT 184          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METS5 (50S ribosomal protein L15e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.159e-22
Identity = 52/145 (35.86%), Postives = 76/145 (52.41%), Query Frame = 1
Query:   40 AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQ 474
            AY +++  W  ++    + + R R  E+R   ++ R+ +PTR D+AR LGYKAKQ                         +P   GV      +S + +AEE+A RK  GL+VL SY++ ED  YKY+EVILVD  +  I +DPQ
Sbjct:    5 AYSFMASTWASEEWK--KTVIRQRLVEWRNQNTVTRIEKPTRLDRARALGYKAKQGIIVARVKVEKGGMDKQRPNS--GRRPKRMGVYGFSPAKSLQFIAEEKAARKFPGLEVLGSYYVAEDGKYKYYEVILVDPHNPVIMSDPQ 145          

HSP 2 Score: 37.7354 bits (86), Expect = 7.159e-22
Identity = 15/29 (51.72%), Postives = 21/29 (72.41%), Query Frame = 2
Query:  470 PRINWICKPVHKHRELRGLTSAGKKYRGL 556
            P+ NW+  P ++ R  RGLTSAG++ RGL
Sbjct:  144 PQFNWLKNPANRGRVFRGLTSAGRRTRGL 172          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METB6 (50S ribosomal protein L15e OS=Methanoregula boonei (strain 6A8) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.678e-21
Identity = 54/144 (37.50%), Postives = 75/144 (52.08%), Query Frame = 1
Query:   43 YKYVSELW-RKKQSDVMRFL-QRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            Y YV E W R  +SDV   L  R++ W  R+  S+ R+ RPTR D+AR LGYKAKQ                     +   +    G       +S + +AEERA  +   ++VLNSYW+ +D   KY+EVILVD  H +I++D
Sbjct:    6 YAYVREAWARPDKSDVKALLWDRMQVW--RREGSVTRIDRPTRIDRARALGYKAKQGIAVVRVHVRRGGRRASRY--VRARRSARMGKNSSTPGKSIQRIAEERASVRYPNMEVLNSYWVGQDGKLKYYEVILVDGHHPSIQSD 145          

HSP 2 Score: 37.3502 bits (85), Expect = 2.678e-21
Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = 2
Query:  482 WICKPVHKHRELRGLTSAGKKYRGLRGKG 568
            W+  P H+ R  RG TSAG+K RG+R +G
Sbjct:  150 WLANPTHRGRAERGKTSAGRKGRGMRTRG 178          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_PICTO (50S ribosomal protein L15e OS=Picrophilus torridus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.298e-20
Identity = 53/147 (36.05%), Postives = 83/147 (56.46%), Query Frame = 1
Query:   34 MGAYKYVSELWRK-KQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 468
            + +Y  + + W+K K+SD+   +Q+ R   +R+  S+VR+  PTR D+AR LGYKAKQ                     I+ G+ P      +L  ++S + +AEERA  K   ++VLNSY++ ED  YKY+EVIL+D +  A+ +D
Sbjct:    2 LSSYSMIRDSWKKLKKSDIYP-VQKARMVSWRKSGSVVRLDYPTRLDRARSLGYKAKQGFIIVRSRVRKGGQHRPK---IMGGRRPRRLAYNKLTVKKSIQLIAEERAADKYPNMEVLNSYYVGEDGLYKYYEVILIDRSSPAVLSD 144          

HSP 2 Score: 33.4982 bits (75), Expect = 1.298e-20
Identity = 18/37 (48.65%), Postives = 22/37 (59.46%), Query Frame = 2
Query:  446 PTMLSAMTPRINWICKPVHKHRELRGLTSAGKKYRGL 556
            P +LS     ++WI    +K R  RGLTSAG K RGL
Sbjct:  139 PAVLS--DKNVSWIANSANKGRVYRGLTSAGYKSRGL 173          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_PYRAE (50S ribosomal protein L15e OS=Pyrobaculum aerophilum GN=rpl15e PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.408e-20
Identity = 60/144 (41.67%), Postives = 79/144 (54.86%), Query Frame = 1
Query:   40 AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDP 471
            AY Y++  +RK   +V   L R    E+R+ P+IVRV RP R ++AR+LGYKAKQ                         +P   GV  +   +S R VAEERA RK   L+VLNSYW+ +D  Y+YFEVIL+D     I+NDP
Sbjct:    5 AYSYMAMWYRKIGREVHERLMRKILIEWRKAPAIVRVERPFRLERARKLGYKAKQGVVVVRVRLMRGPFNRRRPDS--GRRPKRMGVYGITAWKSWRQVAEERAARKHPNLEVLNSYWVADDGIYRYFEVILIDCNLPTIKNDP 146          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_METLZ (50S ribosomal protein L15e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.212e-18
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 1
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDP 471
            Y YV + W+K     ++ L   R   +R+  ++VR+ RPTR D+AR LGYKAKQ                      + G+ TN+ G+ +    ++ +S+AEERA  +   ++VLNSYW+ +D   KY+EVILVD      RN P
Sbjct:    6 YGYVRDAWKKPAESGVKKLLWERMQTWRRQGAVVRLERPTRIDRARELGYKAKQGIIVVRASIRRGGRRKSRY---IRGRRTNRMGMRKATPGKNLQSIAEERAATRYPNMEVLNSYWVGQDGKSKYYEVILVD------RNSP 140          

HSP 2 Score: 26.9498 bits (58), Expect = 4.212e-18
Identity = 15/36 (41.67%), Postives = 19/36 (52.78%), Query Frame = 2
Query:  509 RELRGLTSAGKKYRGLRGKGS------PCTTRHDLQ 598
            R  RG TSAG++ RGL  +G+      P  T H  Q
Sbjct:  157 RVFRGKTSAGRRARGLHNRGTGTEKCRPSLTSHKNQ 192          
BLAST of DY259992 vs. ExPASy Swiss-Prot
Match: RL15E_THEVO (50S ribosomal protein L15e OS=Thermoplasma volcanium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 8.565e-18
Identity = 65/190 (34.21%), Postives = 95/190 (50.00%), Query Frame = 1
Query:   43 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPQDQLDL*ACPQAQGASWTHFCWEEVQ-RSPRKGVTLHHKARPSRRA 606
            Y+ + E W+  +   +  +++ R   +R  PS+VR+  PTR D+AR LGYK+K                      I+ G+ P      +L  ++S + +AEERA  K   L+VLNSY++ ED  YKY+EVILVD +H  I NDP   +   + PQ  G  +        + R  R G     K+RPS RA
Sbjct:    7 YQEIREEWKSLKKSEIYDVEKSRMIGWRHGPSVVRLDHPTRIDRARALGYKSKDGFIVVRSRVRRGGSNREK---IMGGRRPRRLAYNKLTRKKSLKLIAEERAADKYPNLEVLNSYYVGEDGLYKYYEVILVDKSHPNIYNDP--HISWISEPQNTGRVYRGLTSAGYKVRGLRTGRKGSSKSRPSIRA 191          
The following BLAST results are available for this feature:
BLAST of DY259992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL15E_METMJ2.344e-2338.0350S ribosomal protein L15e OS=Methanoculleus maris... [more]
RL15E_METAC1.481e-2236.3650S ribosomal protein L15e OS=Methanosarcina aceti... [more]
RL15E_HALMA2.507e-2237.7650S ribosomal protein L15e OS=Haloarcula marismort... [more]
RL15E_METMA5.521e-2237.0650S ribosomal protein L15e OS=Methanosarcina mazei... [more]
RL15E_METS57.159e-2235.8650S ribosomal protein L15e OS=Metallosphaera sedul... [more]
RL15E_METB62.678e-2137.5050S ribosomal protein L15e OS=Methanoregula boonei... [more]
RL15E_PICTO1.298e-2036.0550S ribosomal protein L15e OS=Picrophilus torridus... [more]
RL15E_PYRAE2.408e-2041.6750S ribosomal protein L15e OS=Pyrobaculum aerophil... [more]
RL15E_METLZ4.212e-1836.1150S ribosomal protein L15e OS=Methanocorpusculum l... [more]
RL15E_THEVO8.565e-1834.2150S ribosomal protein L15e OS=Thermoplasma volcani... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259992 ID=DY259992; Name=DY259992; organism=Citrus clementina; type=EST; length=1107bp
CATCACAGCACCCTTTAGCTCGACGATCGAACAATGGGTGCATACAAGTA
CGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTCTTGC
AGAGGGTGAGGTGCTGGGAGTACCGTCAGCACCCTTCCATCGTCCGCGTC
ACCCGTCCCACTCGCCCCGACAAGGCTCGCCGCTTGGGCTACAAGGCCAA
GCAGGGTTATGTCGTTTATCGTGTGCGTGTAAGACGTGGAGGACGAAAGA
GACCAGTTCCCAAGGGTATTGTATATGGTAAACCGACAAACCAGGGTGTC
ACTCAGCTTAAATTCCAGCGCAGCAAGCGTTCAGTTGCTGAGGAACGTGC
CGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCAACTCATACTGGATCAATG
AGGATTCAACTTACAAGTACTTTGAGGTAATCCTGGTGGATGCTGCCCAC
AATGCTATCCGCAATGACCCCCAGGATCAACTGGATCTGTAAGCCTGTCC
ACAAGCACAGGGAGCTTCGTGGACTCACTTCTGCTGGGAAGAAGTACAGA
GGTCTCCGAGGAAAGGGGTCACCTTGCACCACAAGGCACGACCTTCAAGA
AGGGCAACCCTGGAAGAGGAACCAGACTCCTCTCTCTCAGGCGTTACCGT
TAAACCTTCTGGATTGGTTACTTGGTGTTTTTTCACATTTATCAACCTAG
TTTAAATTCCGTTGGAGTTTGGAACCCCGAAAACAAGGTGTTTTTGGTTA
GTTTTTTGCTGCCACACGGGTCTAATTTTTGATTTCACTTGGGCCAATTG
AAATTTTGTAAATTCCAAAGGATTTGTTTTATCCAAAAAAATACACTCCA
GAATTGTGGGGGGGACACGTTCCCTGCCCGGCCCAAAAAAAATAAAAAAA
AAAACCGCCCTTTTTCTTGCGCACATTTTGGTTCATAAAAATAAAACCAT
ATACAGACGAAGTTGTGGAGCGACGGGTCAGGGGCACTATGCGATGTGAT
ACTAGAACAGACTTGATTTTTGCTTCCCGCGCGCAACCGGGCAGCTATTG
GCGTGTCACGCATATACGATGGAATATGCTAACGGTTCTGCCTCAGCCAG
CGCTACA
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