DY259996

Overview
NameDY259996
Unique NameDY259996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length937
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1389 contig Ccv1_Contig1389:1..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259996 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 4.026e-39
Identity = 81/151 (53.64%), Postives = 114/151 (75.50%), Query Frame = 1
Query:  106 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 558
            MGRG+V L+RIENKI+RQVTF+KRR+GLLKKA+E+S+LCDAEVAL++FS  G+L+++S+ S M + LERY+RY YA +   A   +   N   EY  LKA +E+LQ++Q++ +GEDLA L+  EL+ +E Q+   LK IRSRK Q++L  +
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDEL 151          
BLAST of DY259996 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.813e-38
Identity = 77/153 (50.33%), Postives = 118/153 (77.12%), Query Frame = 1
Query:  106 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 561
            MGRG+V+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAE+AL++FS +GKL+E+ S+ S M R +++Y ++ YA      +  +    +  +Y KLK+R+E+LQ +Q+H +GE+L+++ + EL+ +E+Q+D+ L+ IRS K + ML  +S
Sbjct:    1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQ-DYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLS 152          
BLAST of DY259996 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 2.209e-37
Identity = 79/151 (52.32%), Postives = 112/151 (74.17%), Query Frame = 1
Query:  106 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 558
            MGRGRV++KRIENKINRQVTFSKRR+GLLKKA+E+SVLCDAEVALI+FS++GKL+E+ +   +E  +ERY R CY          E   +W  E +KLK++ E L R  ++ +GEDL ++ +KELQ++E+Q+++ L   R RK Q+M++ +
Sbjct:    1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVG-IESTIERYNR-CYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEM 149          
BLAST of DY259996 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.768e-37
Identity = 80/152 (52.63%), Postives = 110/152 (72.37%), Query Frame = 1
Query:  106 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 561
            MGRGRV+LK IENKINRQVTF+KRR  LLKKA+E+SVLCDAEVALI+FS +GKL+E+ + + M + LE+Y++  +   +      E   +   EY KLK R+E LQR+Q++ +GEDL  L  KEL+ +E+Q+DS L+ IRS + Q ML  ++
Sbjct:    1 MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQKCNFGSPESTIISRETQSS-QQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLA 151          
BLAST of DY259996 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.432e-36
Identity = 79/155 (50.97%), Postives = 117/155 (75.48%), Query Frame = 1
Query:  106 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERYCYAERQLQANEI-----EPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQ 552
            MGRG+VQ++RIEN+++RQVTFSKRR GLLKKAHEI+VLCD +VA IVFS KG LF Y S+ + MERILE+Y+R+   E   + N +     E  G+ + ++ KL+ R+E L+++Q++ MG++L  L+L+++Q +E QID+ L  IRSRK +L+++
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRH---ELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLME 152          
BLAST of DY259996 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 9.281e-36
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = 1
Query:  106 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST-DSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 558
            MGRG++++KRIEN  NRQVTFSKRR GLLKKAHE+SVLCDAE+ LI+FS+ GKLFEYS+  S M++I+ERY++   A    +  E + N +   E +++K   E LQ N +  MGEDL  L++ EL  + QQ++S    +RSRKNQLMLQ +
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSGA----RITEYD-NQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQL 147          
BLAST of DY259996 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 7.857e-35
Identity = 71/154 (46.10%), Postives = 115/154 (74.68%), Query Frame = 1
Query:  106 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYER--YCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 561
            MGRGR+++KRIEN  +RQVTF KRR+GLLKKA+E+SVLCDAEVALIVFS++G+L+EYS ++ ++  ++RY++   C +       E+     +  E +KL+ ++++LQ   KH +G+++++LSLKEL+ +E +++ G+  IR+RKN+L+   I+
Sbjct:    1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEIN 154          
BLAST of DY259996 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.899e-34
Identity = 74/152 (48.68%), Postives = 116/152 (76.32%), Query Frame = 1
Query:  106 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 558
            +GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFS++G+L+EY+ +S ++  +ERY++ C ++     +  E N   +  E SKL+A++  LQ   ++F+GE LA L+L++L+++EQ+I+ G+  IR++KN+L+   I
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VKATIERYKKAC-SDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEI 166          
BLAST of DY259996 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.093e-34
Identity = 75/152 (49.34%), Postives = 115/152 (75.66%), Query Frame = 1
Query:  106 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 558
            +GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFS++G+L+EY+ +S ++  +ERY++ C ++     +  E N   +  E SKL+A++  LQ   ++ +GE LA LSL++L+++EQ+I+ G+  IRS+KN+L+   I
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VKATIERYKKAC-SDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEI 166          
BLAST of DY259996 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 6.651e-34
Identity = 76/151 (50.33%), Postives = 108/151 (71.52%), Query Frame = 1
Query:  106 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 558
            MGRG+V++KRIENKI RQVTFSKR+SGLLKKA+E+SVLCDAEV+LI+FST GKL+E+S    + R +ERY  Y   +  L  + +E       E +KLK + E L R  ++ +GEDL  +S+KELQ++E+Q++  L   R +K Q+M++ +
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVG-VGRTIERY--YRCKDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQM 148          
The following BLAST results are available for this feature:
BLAST of DY259996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MAD34_ORYSJ4.026e-3953.64MADS-box transcription factor 34 OS=Oryza sativa s... [more]
AGL3_ARATH5.813e-3850.33Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
AGL6_ARATH2.209e-3752.32Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
AGL9_ARADE3.768e-3752.63Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
MAD20_ORYSJ1.432e-3650.97MADS-box transcription factor 20 OS=Oryza sativa s... [more]
GGM13_GNEGN9.281e-3653.29MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
MAD13_ORYSJ7.857e-3546.10MADS-box transcription factor 13 OS=Oryza sativa s... [more]
AG_PETHY3.899e-3448.68Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_TOBAC5.093e-3449.34Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AGL13_ARATH6.651e-3450.33Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259996 ID=DY259996; Name=DY259996; organism=Citrus clementina; type=EST; length=937bp
ATCTCTTTTTCTATAAAAGTACAGAGATTAGAGAGATACCCAGAAGAAGC
CTGCAAGTTTCTTTAGTGGAGAATTGCTGGTGATAATTATTAATAGATAG
TTAATATGGGGAGAGGAAGGGTGCAGCTGAAGAGGATAGAGAACAAGATC
AATAGACAAGTGACTTTCTCTAAGAGAAGGTCTGGTTTATTGAAAAAGGC
CCATGAGATCTCTGTGCTTTGTGACGCTGAAGTTGCTTTGATCGTCTTCT
CCACTAAAGGCAAGCTCTTTGAATACTCTACTGATTCATGCATGGAAAGA
ATCCTTGAACGATATGAGAGGTATTGTTATGCGGAGAGGCAGCTTCAAGC
AAATGAGATTGAACCAAATGGAAACTGGACATTGGAATATTCCAAGCTTA
AAGCTAGGATGGAGGTTTTACAAAGAAATCAAAAGCATTTCATGGGAGAG
GATCTTGCAGACTTAAGTCTCAAAGAGCTTCAAAGTGTAGAGCAGCAGAT
TGATTCTGGTCTTAAACTCATTCGATCAAGAAAGAACCAACTCATGCTTC
AATCCATTTCAGAGCTTCAGAAAAAGGACAAGTTATTGAAAGAGCAAAAC
AACTTGCTTGCAAAGAAGGTAAAAGAAAAGGAGAAGCTATTGAGCCAGAA
GCCGCATGCAGGGAACGGCGCCACCAGCTAATCCTGACTGAAACTCCTCC
CATGTTCCTCTAATGGCGAATTTGACCCATAACCTCTTCCCAATGGGGGG
GGGCCCCGGAAAGGGGGAGGAGGAACTCCCCAAGGGAATTCAGGCAACGC
CCCGCCGGCCCCTTGGAGCCTCCCTCCCCTTCTTAAAAATTTACAAACCG
GGAGTTCCGGATTCATACCCGATGGGCCGATCCCTCTTTGGCCAAGGAAA
TTTACCCAAACAAAAATTTTTTATTTGCCTGGGGGCC
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