DY260003
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROM4 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplD PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 5.502e-37 Identity = 77/176 (43.75%), Postives = 117/176 (66.48%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q ++ G+ LDLK A TA ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +S+ +N+KE+RL + ++V++F + PKT+E +EA+ R+G+ K ++ + SE + +S +N ++ + A+++ Sbjct: 10 QGQEAGKATLDLKVAKETTAVDLIHRAVVRQQAHSRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSFSLGMNRKERRL--ALRTALMARINDLMIVQDFGTALKVPKTREIVEALSRFGIADDAKVLIILAQPSEIIIRSVRNIERVKVIGADQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_GLOVI (50S ribosomal protein L4 OS=Gloeobacter violaceus GN=rplD PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 5.502e-37 Identity = 85/174 (48.85%), Postives = 112/174 (64.37%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVM-EVSENVEKSSKNNGNLENVDA 689 Q GE LDL A+ TA VV+ A M N R+GTASTLTRGEVRGGGRKP+ QK TGRAR GS R+PL GGV+FGPKPRD+ IK+N+KE+RL E+ IVV+EF+G+ PKT+E ++A RWG+D ++ L++ E N S++N N++ + A Sbjct: 10 QGNATGEVDLDLPVASAATASHVVYLAFKRQMVNSRQGTASTLTRGEVRGGGRKPWKQKGTGRARAGSIRSPLWRKGGVIFGPKPRDFEIKMNRKERRL--ALRTALQSRVEDLIVVDEFEGQLAAPKTRELVQAFERWGVDMASQSILLILRERQTNTYLSARNLPNVKVITA 181
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNPW (50S ribosomal protein L4 OS=Synechococcus sp. (strain WH7803) GN=rplD PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 7.186e-37 Identity = 79/176 (44.89%), Postives = 115/176 (65.34%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q K+ G+ LDLK A TA ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG+VFGPKPR +++ +N+KE+RL ++ VV++F E PKT+E ++A+ R G++ K ++ SE + +S +N ++ + A ++ Sbjct: 10 QGKETGKASLDLKVAKETTALDLMHRAVLRQQAHTRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRSYNLAMNRKERRL--ALRTALMARIDDVTVVKDFGTSLEAPKTREIVDALGRLGIEADSKVLIVLGTPSEVLRRSVRNLEKVKLIAANQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROM9 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplD PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.601e-36 Identity = 77/174 (44.25%), Postives = 112/174 (64.37%), Query Frame = 3 Query: 177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 KK GE LDL A ++ ++HRA++ + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL + VE+F ++PKT + I + R G+ +K ++ SE ++KS N ++ + A+++ Sbjct: 12 KKSGEVKLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRISDVKAVEDFGSTLKQPKTSDIINGLTRLGIQKTEKVLVILDSPSEVIKKSINNIEKVKLIAADQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNSC (50S ribosomal protein L4 OS=Synechococcus sp. (strain CC9605) GN=rplD PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 3.566e-36 Identity = 77/176 (43.75%), Postives = 114/176 (64.77%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q K+ G+ LDLK A TA ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPL+PGGG++FGPKPR +++ +N+KE+RL ++ VV++F E PKT+E +A+ R G+ K ++ S+ V +S +N ++ + A+++ Sbjct: 10 QGKEAGKATLDLKVAKETTAVDLMHRAVLRQQAHARQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLKPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARIDDVTVVQDFGASLEAPKTREITDALGRLGVAAGSKVLIVLTNPSDVVRRSVRNLEKVKLISADQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNS3 (50S ribosomal protein L4 OS=Synechococcus sp. (strain CC9311) GN=rplD PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 6.083e-36 Identity = 78/176 (44.32%), Postives = 113/176 (64.20%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q K+ G+ LDLK A +A ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+R E+ +VV++F PKTKE I+A+ R + K ++ SE V +S +N ++ + A+++ Sbjct: 10 QGKEAGKASLDLKVAKEASALDLMHRAVLRQQAHSRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERR--SALRTALMARIEDLVVVKDFATTLTTPKTKEIIDALGRLDVSATSKVLIILTNPSEAVRRSIRNLETVKLIAADQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROMM (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplD PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 1.038e-35 Identity = 77/176 (43.75%), Postives = 115/176 (65.34%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q K+ G+ L+LK + TA ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+G+ RTPLRPGGG++FGPKPR +++ +N+KE+RL E+ IVV++F + PKT+E +A+ R GL K ++ SE + +S +N ++ + A+++ Sbjct: 10 QGKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARIEDVIVVKDFGNSLKVPKTREISDALIRLGLAADAKVLIILSTPSEIIRRSVRNLEKVKLIAADQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROM2 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplD PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 1.038e-35 Identity = 75/174 (43.10%), Postives = 112/174 (64.37%), Query Frame = 3 Query: 177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 KK G+ LDL A ++ ++HRA++ + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL + VE+F ++PKT + I + R G+ +K ++ S+ ++KS N ++ + A+++ Sbjct: 12 KKSGKVTLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRVSDMKAVEDFGSTLKQPKTSDIINGLARLGIQKNEKVLVILDSPSDVIKKSINNIEKVKLIAADQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNS9 (50S ribosomal protein L4 OS=Synechococcus sp. (strain CC9902) GN=rplD PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.355e-35 Identity = 78/176 (44.32%), Postives = 111/176 (63.07%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q K+ G+ LDLK A +A ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+R ++ VV++F E PKT+E EA+ R G+ K ++ SE V +S +N ++ + A + Sbjct: 10 QGKEAGKATLDLKVAKEASAVDLMHRAVLRQQAHMRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERR--SALRTALMARIDDITVVKDFGTSLEAPKTREITEALGRLGIAADTKVLIVLTNPSEMVRRSVRNLDKVKLISANHL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROMS (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain AS9601) GN=rplD PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.355e-35 Identity = 75/174 (43.10%), Postives = 112/174 (64.37%), Query Frame = 3 Query: 177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 KK G+ LDL A ++ ++HRA++ + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL + VE+F ++PKT + I + R G+ +K ++ S+ ++KS N ++ + A+++ Sbjct: 12 KKSGKVSLDLAVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRVSDMKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSDIIKKSINNIEKVKLIAADQL 183 The following BLAST results are available for this feature:
BLAST of DY260003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260003 ID=DY260003; Name=DY260003; organism=Citrus clementina; type=EST; length=1008bpback to top |