DY260003

Overview
NameDY260003
Unique NameDY260003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1008
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROM4 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplD PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 5.502e-37
Identity = 77/176 (43.75%), Postives = 117/176 (66.48%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q ++ G+  LDLK A   TA  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +S+ +N+KE+RL             + ++V++F    + PKT+E +EA+ R+G+    K   ++ + SE + +S +N   ++ + A+++
Sbjct:   10 QGQEAGKATLDLKVAKETTAVDLIHRAVVRQQAHSRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSFSLGMNRKERRL--ALRTALMARINDLMIVQDFGTALKVPKTREIVEALSRFGIADDAKVLIILAQPSEIIIRSVRNIERVKVIGADQL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_GLOVI (50S ribosomal protein L4 OS=Gloeobacter violaceus GN=rplD PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 5.502e-37
Identity = 85/174 (48.85%), Postives = 112/174 (64.37%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVM-EVSENVEKSSKNNGNLENVDA 689
            Q    GE  LDL  A+  TA  VV+ A    M N R+GTASTLTRGEVRGGGRKP+ QK TGRAR GS R+PL   GGV+FGPKPRD+ IK+N+KE+RL            E+ IVV+EF+G+   PKT+E ++A  RWG+D   ++  L++ E   N   S++N  N++ + A
Sbjct:   10 QGNATGEVDLDLPVASAATASHVVYLAFKRQMVNSRQGTASTLTRGEVRGGGRKPWKQKGTGRARAGSIRSPLWRKGGVIFGPKPRDFEIKMNRKERRL--ALRTALQSRVEDLIVVDEFEGQLAAPKTRELVQAFERWGVDMASQSILLILRERQTNTYLSARNLPNVKVITA 181          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNPW (50S ribosomal protein L4 OS=Synechococcus sp. (strain WH7803) GN=rplD PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 7.186e-37
Identity = 79/176 (44.89%), Postives = 115/176 (65.34%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q K+ G+  LDLK A   TA  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG+VFGPKPR +++ +N+KE+RL            ++  VV++F    E PKT+E ++A+ R G++   K   ++   SE + +S +N   ++ + A ++
Sbjct:   10 QGKETGKASLDLKVAKETTALDLMHRAVLRQQAHTRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRSYNLAMNRKERRL--ALRTALMARIDDVTVVKDFGTSLEAPKTREIVDALGRLGIEADSKVLIVLGTPSEVLRRSVRNLEKVKLIAANQL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROM9 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplD PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.601e-36
Identity = 77/174 (44.25%), Postives = 112/174 (64.37%), Query Frame = 3
Query:  177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            KK GE  LDL  A   ++  ++HRA++  + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL             +   VE+F    ++PKT + I  + R G+   +K   ++   SE ++KS  N   ++ + A+++
Sbjct:   12 KKSGEVKLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRISDVKAVEDFGSTLKQPKTSDIINGLTRLGIQKTEKVLVILDSPSEVIKKSINNIEKVKLIAADQL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNSC (50S ribosomal protein L4 OS=Synechococcus sp. (strain CC9605) GN=rplD PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.566e-36
Identity = 77/176 (43.75%), Postives = 114/176 (64.77%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q K+ G+  LDLK A   TA  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPL+PGGG++FGPKPR +++ +N+KE+RL            ++  VV++F    E PKT+E  +A+ R G+    K   ++   S+ V +S +N   ++ + A+++
Sbjct:   10 QGKEAGKATLDLKVAKETTAVDLMHRAVLRQQAHARQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLKPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARIDDVTVVQDFGASLEAPKTREITDALGRLGVAAGSKVLIVLTNPSDVVRRSVRNLEKVKLISADQL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNS3 (50S ribosomal protein L4 OS=Synechococcus sp. (strain CC9311) GN=rplD PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.083e-36
Identity = 78/176 (44.32%), Postives = 113/176 (64.20%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q K+ G+  LDLK A   +A  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+R             E+ +VV++F      PKTKE I+A+ R  +    K   ++   SE V +S +N   ++ + A+++
Sbjct:   10 QGKEAGKASLDLKVAKEASALDLMHRAVLRQQAHSRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERR--SALRTALMARIEDLVVVKDFATTLTTPKTKEIIDALGRLDVSATSKVLIILTNPSEAVRRSIRNLETVKLIAADQL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROMM (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplD PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.038e-35
Identity = 77/176 (43.75%), Postives = 115/176 (65.34%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q K+ G+  L+LK +   TA  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+G+ RTPLRPGGG++FGPKPR +++ +N+KE+RL            E+ IVV++F    + PKT+E  +A+ R GL    K   ++   SE + +S +N   ++ + A+++
Sbjct:   10 QGKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARIEDVIVVKDFGNSLKVPKTREISDALIRLGLAADAKVLIILSTPSEIIRRSVRNLEKVKLIAADQL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROM2 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplD PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.038e-35
Identity = 75/174 (43.10%), Postives = 112/174 (64.37%), Query Frame = 3
Query:  177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            KK G+  LDL  A   ++  ++HRA++  + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL             +   VE+F    ++PKT + I  + R G+   +K   ++   S+ ++KS  N   ++ + A+++
Sbjct:   12 KKSGKVTLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRVSDMKAVEDFGSTLKQPKTSDIINGLARLGIQKNEKVLVILDSPSDVIKKSINNIEKVKLIAADQL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNS9 (50S ribosomal protein L4 OS=Synechococcus sp. (strain CC9902) GN=rplD PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.355e-35
Identity = 78/176 (44.32%), Postives = 111/176 (63.07%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q K+ G+  LDLK A   +A  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+R             ++  VV++F    E PKT+E  EA+ R G+    K   ++   SE V +S +N   ++ + A  +
Sbjct:   10 QGKEAGKATLDLKVAKEASAVDLMHRAVLRQQAHMRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERR--SALRTALMARIDDITVVKDFGTSLEAPKTREITEALGRLGIAADTKVLIVLTNPSEMVRRSVRNLDKVKLISANHL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROMS (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain AS9601) GN=rplD PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.355e-35
Identity = 75/174 (43.10%), Postives = 112/174 (64.37%), Query Frame = 3
Query:  177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            KK G+  LDL  A   ++  ++HRA++  + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL             +   VE+F    ++PKT + I  + R G+   +K   ++   S+ ++KS  N   ++ + A+++
Sbjct:   12 KKSGKVSLDLAVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRVSDMKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSDIIKKSINNIEKVKLIAADQL 183          
The following BLAST results are available for this feature:
BLAST of DY260003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_PROM45.502e-3743.7550S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_GLOVI5.502e-3748.8550S ribosomal protein L4 OS=Gloeobacter violaceus ... [more]
RL4_SYNPW7.186e-3744.8950S ribosomal protein L4 OS=Synechococcus sp. (str... [more]
RL4_PROM91.601e-3644.2550S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_SYNSC3.566e-3643.7550S ribosomal protein L4 OS=Synechococcus sp. (str... [more]
RL4_SYNS36.083e-3644.3250S ribosomal protein L4 OS=Synechococcus sp. (str... [more]
RL4_PROMM1.038e-3543.7550S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_PROM21.038e-3543.1050S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_SYNS91.355e-3544.3250S ribosomal protein L4 OS=Synechococcus sp. (str... [more]
RL4_PROMS1.355e-3543.1050S ribosomal protein L4 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260003 ID=DY260003; Name=DY260003; organism=Citrus clementina; type=EST; length=1008bp
CTCGTTTTCATCTCTTTCATTTTTCTCCTCCACAATCTTCCTCACTTCAT
CTTCTAACAAAGTTCCAAAGCCCATTCAACTCGCCAAGCCAAATTCCCTA
ATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCAACTCGCCTCTCC
GCTCCCGATACTGTCCTTCACAGGCGAAAAAAATCGGCGAGACATACCTC
GACCTAAAGTCCGCCGCACCCGACACAGCGCGTGCGGTTGTCCACCGGGC
GTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGCGTCGACTCTCA
CGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACTCTCAAAAGAAA
ACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTTCGGCCCGGAGG
AGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGATTAAGATAAACA
AGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGAGCGCCGCGGCG
GCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAGTTTGAGAGGCC
GAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGGTTTGGACCCCA
AGCAGAAAGCGACGTTCCTGGTGATGGAGGTGAGCGAGAATGTGGAAAAA
TCCAGTAAGAATAATGGGAACTTGGAAAATGTGGACGCCGAGGAAATTGA
ATTTGTTTGAAATTTTGGAGGCCGAAACCCCGGGGTTGACCCCGCCACCG
TTGATTTCCTGGATGGGCCGGAATGGGGTCCAGTCCAAGGGAAAAGGCCA
ACAAAAAAAAAAAAAAGTGGACCCAGGGACGCCGGGGAAGAAATTAACGC
ACCAAAAAAAAAATTCAAAAATTTGGGGCACTTTTCCCCCCGAAAGAACA
AAGAGATCATTTAATTGGCACCCCCCTCGAATTACAAGGAATTCTTCATC
CCTCCAAACCGCCCACCCCCCACACCGCGGCTAAGCGCCCCCGCGGGCCC
CCCCCCCC
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