DY260003

Overview
NameDY260003
Unique NameDY260003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1008
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROM0 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplD PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.355e-35
Identity = 75/174 (43.10%), Postives = 112/174 (64.37%), Query Frame = 3
Query:  177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            KK G+  LDL  A   ++  ++HRA++  + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL             +   VE+F    ++PKT + I  + R G+   +K   ++   S+ ++KS  N   ++ + A+++
Sbjct:   12 KKSGKVSLDLAVAKKTSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRVSDIKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSDIIKKSINNIEKVKLIAADQL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROM3 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplD PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.770e-35
Identity = 76/176 (43.18%), Postives = 115/176 (65.34%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q K+ G+  L+LK +   TA  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+G+ RTPLRPGGG++FGPKPR +++ +N+KE+RL            E+ IVV++F    + PKT+E  +A+ R G+    K   ++   SE + +S +N   ++ + A+++
Sbjct:   10 QGKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARLEDVIVVKDFGDSLKAPKTREISDALVRLGVAADAKVLIILSTPSEIIRRSVRNLEKVKLIAADQL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RK4_PORPU (50S ribosomal protein L4, chloroplastic OS=Porphyra purpurea GN=rpl4 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.312e-35
Identity = 83/174 (47.70%), Postives = 111/174 (63.79%), Query Frame = 3
Query:  186 GETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEIEFV 707
            G   L+LK  + D+   +VHRAL+     KR+G+A+T TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPR ++ K+NKKE +L             NT+VVE FD  F++PKTK FIEA+ RW LD  +K   +V +   NV  S +N  N+E + A+ +  +
Sbjct:   20 GNADLNLK-ISKDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFAKKMNKKESQLALRTALNNKSV--NTLVVENFDTYFQKPKTKLFIEAITRWNLDLNKKLLVIVDKKDLNVYLSIRNLYNVEIISADTLNIM 190          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RK4_PORYE (50S ribosomal protein L4, chloroplastic OS=Porphyra yezoensis GN=rpl4 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.019e-35
Identity = 82/191 (42.93%), Postives = 118/191 (61.78%), Query Frame = 3
Query:  135 LNSPLRSRYCPSQAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEIEFV 707
            +N+ L  +    + +  G   L+LK  + D+   +VHRAL+     KR+G+A+T TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPR ++ K+NKKE++L             NT++VE F+  F +PKTK F+EA+ RW LD  +K   +V +   NV  S +N  N+E + A+ +  +
Sbjct:    3 VNTQLNYQVYNWEGQVSGNADLNLK-VSQDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFTKKMNKKERQLALRTALNNKSV--NTLIVENFNSYFHQPKTKLFMEAIHRWNLDLNKKVLVIVDKKDPNVYLSIRNLHNVELISADTLNIM 190          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROMA (50S ribosomal protein L4 OS=Prochlorococcus marinus GN=rplD PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 5.150e-35
Identity = 75/176 (42.61%), Postives = 112/176 (63.64%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q K+ G+  L+LK A   +A  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL             + I V++F  K + PKTKE  + + R  +    K   ++ + S+ + +S +N   ++ + AE +
Sbjct:   10 QGKEAGKASLNLKVAKDSSAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRQYNLSMNRKERRL--ALRTALMARFNDVIAVKDFGSKLKVPKTKEIQDFLARLDISSNSKVLIILSQPSDIIRRSVRNLEKVKLIAAEHL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNJB (50S ribosomal protein L4 OS=Synechococcus sp. GN=rplD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.392e-32
Identity = 74/176 (42.05%), Postives = 109/176 (61.93%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q + +G   L LK A P+TA  +++ AL   M N R+G A T TR EVRGGGRKP+ QK TGRAR GS R+PL   GGV+FGP+ R++++ +N+KE++L            E+ IVVE+F  +   PKT+   +A+ RWG+   Q A  +V E SE VE++ +N   ++ +  ++I
Sbjct:   10 QGETVGSAELSLKVARPETAAHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPWKQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQL--ALRTALQSRVEDLIVVEDFQEQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAVERAVRNIARVKLIGLDQI 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNJA (50S ribosomal protein L4 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplD PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.080e-32
Identity = 73/176 (41.48%), Postives = 109/176 (61.93%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q + +G   L LK A P+TA  +++ AL   M N R+G A T TR EVRGGGRKP+ QK TGRAR GS R+PL   GGV+FGP+ R++++ +N+KE++L            E+ IVVE+F  +   PKT+   +A+ RWG+   Q A  +V E SE VE++ +N   ++ +  +++
Sbjct:   10 QGETVGSAELSLKVARPETASHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQL--ALRTALQSRVEDLIVVEDFQDQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAVERAVRNIARVKLIGLDQL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RK4_GRATL (50S ribosomal protein L4, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl4 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 9.406e-29
Identity = 69/157 (43.95%), Postives = 93/157 (59.24%), Query Frame = 3
Query:  237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEIEFV 707
            ++HRALI  + N R   A T TRGEV GGGRKP+ QK TGRAR GSNR+PL  GGGV+FGP+ + +  KINKKEK+L            +NTIV E F  K   P TK  +  ++++ LD       +V E S ++  S++N  N+E + A  +  V
Sbjct:   39 ILHRALIHQLSNHRNRNAHTQTRGEVSGGGRKPWKQKGTGRARAGSNRSPLWRGGGVIFGPRHKKYVNKINKKEKQL--ALRILINNKFKNTIVTENFISKISTPNTKILVNNLKKYNLDTNNNILIIVNEKSNDLYLSTRNLKNVELLAANHLNIV 193          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_THEPX (50S ribosomal protein L4 OS=Thermoanaerobacter sp. (strain X514) GN=rplD PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.574e-28
Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = 3
Query:  237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662
            V+H A++  + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P    GG+VFGPKPRD+S K+ KK KRL               IV++EF  K ++PKTK+ +E ++ + +D    A  +V E  +NVE S++N
Sbjct:   32 VMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLDQPKTKKVVELLKNFNVD---SALIVVPEGEKNVELSARN 168          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_THEP3 (50S ribosomal protein L4 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplD PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.574e-28
Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = 3
Query:  237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662
            V+H A++  + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P    GG+VFGPKPRD+S K+ KK KRL               IV++EF  K ++PKTK+ +E ++ + +D    A  +V E  +NVE S++N
Sbjct:   32 VMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLDQPKTKKVVELLKNFNVD---SALIVVPEGEKNVELSARN 168          
The following BLAST results are available for this feature:
BLAST of DY260003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_PROM01.355e-3543.1050S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_PROM31.770e-3543.1850S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RK4_PORPU2.312e-3547.7050S ribosomal protein L4, chloroplastic OS=Porphyr... [more]
RK4_PORYE3.019e-3542.9350S ribosomal protein L4, chloroplastic OS=Porphyr... [more]
RL4_PROMA5.150e-3542.6150S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_SYNJB2.392e-3242.0550S ribosomal protein L4 OS=Synechococcus sp. GN=r... [more]
RL4_SYNJA4.080e-3241.4850S ribosomal protein L4 OS=Synechococcus sp. (str... [more]
RK4_GRATL9.406e-2943.9550S ribosomal protein L4, chloroplastic OS=Gracila... [more]
RL4_THEPX3.574e-2847.8950S ribosomal protein L4 OS=Thermoanaerobacter sp.... [more]
RL4_THEP33.574e-2847.8950S ribosomal protein L4 OS=Thermoanaerobacter pse... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260003 ID=DY260003; Name=DY260003; organism=Citrus clementina; type=EST; length=1008bp
CTCGTTTTCATCTCTTTCATTTTTCTCCTCCACAATCTTCCTCACTTCAT
CTTCTAACAAAGTTCCAAAGCCCATTCAACTCGCCAAGCCAAATTCCCTA
ATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCAACTCGCCTCTCC
GCTCCCGATACTGTCCTTCACAGGCGAAAAAAATCGGCGAGACATACCTC
GACCTAAAGTCCGCCGCACCCGACACAGCGCGTGCGGTTGTCCACCGGGC
GTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGCGTCGACTCTCA
CGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACTCTCAAAAGAAA
ACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTTCGGCCCGGAGG
AGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGATTAAGATAAACA
AGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGAGCGCCGCGGCG
GCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAGTTTGAGAGGCC
GAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGGTTTGGACCCCA
AGCAGAAAGCGACGTTCCTGGTGATGGAGGTGAGCGAGAATGTGGAAAAA
TCCAGTAAGAATAATGGGAACTTGGAAAATGTGGACGCCGAGGAAATTGA
ATTTGTTTGAAATTTTGGAGGCCGAAACCCCGGGGTTGACCCCGCCACCG
TTGATTTCCTGGATGGGCCGGAATGGGGTCCAGTCCAAGGGAAAAGGCCA
ACAAAAAAAAAAAAAAGTGGACCCAGGGACGCCGGGGAAGAAATTAACGC
ACCAAAAAAAAAATTCAAAAATTTGGGGCACTTTTCCCCCCGAAAGAACA
AAGAGATCATTTAATTGGCACCCCCCTCGAATTACAAGGAATTCTTCATC
CCTCCAAACCGCCCACCCCCCACACCGCGGCTAAGCGCCCCCGCGGGCCC
CCCCCCCC
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