DY260003
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROM0 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplD PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.355e-35 Identity = 75/174 (43.10%), Postives = 112/174 (64.37%), Query Frame = 3 Query: 177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 KK G+ LDL A ++ ++HRA++ + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL + VE+F ++PKT + I + R G+ +K ++ S+ ++KS N ++ + A+++ Sbjct: 12 KKSGKVSLDLAVAKKTSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRL--ALRTALMSRVSDIKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSDIIKKSINNIEKVKLIAADQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROM3 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplD PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.770e-35 Identity = 76/176 (43.18%), Postives = 115/176 (65.34%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q K+ G+ L+LK + TA ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+G+ RTPLRPGGG++FGPKPR +++ +N+KE+RL E+ IVV++F + PKT+E +A+ R G+ K ++ SE + +S +N ++ + A+++ Sbjct: 10 QGKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARLEDVIVVKDFGDSLKAPKTREISDALVRLGVAADAKVLIILSTPSEIIRRSVRNLEKVKLIAADQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RK4_PORPU (50S ribosomal protein L4, chloroplastic OS=Porphyra purpurea GN=rpl4 PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 2.312e-35 Identity = 83/174 (47.70%), Postives = 111/174 (63.79%), Query Frame = 3 Query: 186 GETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEIEFV 707 G L+LK + D+ +VHRAL+ KR+G+A+T TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPR ++ K+NKKE +L NT+VVE FD F++PKTK FIEA+ RW LD +K +V + NV S +N N+E + A+ + + Sbjct: 20 GNADLNLK-ISKDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFAKKMNKKESQLALRTALNNKSV--NTLVVENFDTYFQKPKTKLFIEAITRWNLDLNKKLLVIVDKKDLNVYLSIRNLYNVEIISADTLNIM 190
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RK4_PORYE (50S ribosomal protein L4, chloroplastic OS=Porphyra yezoensis GN=rpl4 PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 3.019e-35 Identity = 82/191 (42.93%), Postives = 118/191 (61.78%), Query Frame = 3 Query: 135 LNSPLRSRYCPSQAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEIEFV 707 +N+ L + + + G L+LK + D+ +VHRAL+ KR+G+A+T TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPR ++ K+NKKE++L NT++VE F+ F +PKTK F+EA+ RW LD +K +V + NV S +N N+E + A+ + + Sbjct: 3 VNTQLNYQVYNWEGQVSGNADLNLK-VSQDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFTKKMNKKERQLALRTALNNKSV--NTLIVENFNSYFHQPKTKLFMEAIHRWNLDLNKKVLVIVDKKDPNVYLSIRNLHNVELISADTLNIM 190
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROMA (50S ribosomal protein L4 OS=Prochlorococcus marinus GN=rplD PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 5.150e-35 Identity = 75/176 (42.61%), Postives = 112/176 (63.64%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q K+ G+ L+LK A +A ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL + I V++F K + PKTKE + + R + K ++ + S+ + +S +N ++ + AE + Sbjct: 10 QGKEAGKASLNLKVAKDSSAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRQYNLSMNRKERRL--ALRTALMARFNDVIAVKDFGSKLKVPKTKEIQDFLARLDISSNSKVLIILSQPSDIIRRSVRNLEKVKLIAAEHL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNJB (50S ribosomal protein L4 OS=Synechococcus sp. GN=rplD PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 2.392e-32 Identity = 74/176 (42.05%), Postives = 109/176 (61.93%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q + +G L LK A P+TA +++ AL M N R+G A T TR EVRGGGRKP+ QK TGRAR GS R+PL GGV+FGP+ R++++ +N+KE++L E+ IVVE+F + PKT+ +A+ RWG+ Q A +V E SE VE++ +N ++ + ++I Sbjct: 10 QGETVGSAELSLKVARPETAAHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPWKQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQL--ALRTALQSRVEDLIVVEDFQEQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAVERAVRNIARVKLIGLDQI 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNJA (50S ribosomal protein L4 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplD PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 4.080e-32 Identity = 73/176 (41.48%), Postives = 109/176 (61.93%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q + +G L LK A P+TA +++ AL M N R+G A T TR EVRGGGRKP+ QK TGRAR GS R+PL GGV+FGP+ R++++ +N+KE++L E+ IVVE+F + PKT+ +A+ RWG+ Q A +V E SE VE++ +N ++ + +++ Sbjct: 10 QGETVGSAELSLKVARPETASHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQL--ALRTALQSRVEDLIVVEDFQDQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAVERAVRNIARVKLIGLDQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RK4_GRATL (50S ribosomal protein L4, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl4 PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 9.406e-29 Identity = 69/157 (43.95%), Postives = 93/157 (59.24%), Query Frame = 3 Query: 237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEIEFV 707 ++HRALI + N R A T TRGEV GGGRKP+ QK TGRAR GSNR+PL GGGV+FGP+ + + KINKKEK+L +NTIV E F K P TK + ++++ LD +V E S ++ S++N N+E + A + V Sbjct: 39 ILHRALIHQLSNHRNRNAHTQTRGEVSGGGRKPWKQKGTGRARAGSNRSPLWRGGGVIFGPRHKKYVNKINKKEKQL--ALRILINNKFKNTIVTENFISKISTPNTKILVNNLKKYNLDTNNNILIIVNEKSNDLYLSTRNLKNVELLAANHLNIV 193
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_THEPX (50S ribosomal protein L4 OS=Thermoanaerobacter sp. (strain X514) GN=rplD PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.574e-28 Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = 3 Query: 237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662 V+H A++ + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P GG+VFGPKPRD+S K+ KK KRL IV++EF K ++PKTK+ +E ++ + +D A +V E +NVE S++N Sbjct: 32 VMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLDQPKTKKVVELLKNFNVD---SALIVVPEGEKNVELSARN 168
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_THEP3 (50S ribosomal protein L4 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplD PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.574e-28 Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = 3 Query: 237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662 V+H A++ + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P GG+VFGPKPRD+S K+ KK KRL IV++EF K ++PKTK+ +E ++ + +D A +V E +NVE S++N Sbjct: 32 VMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLDQPKTKKVVELLKNFNVD---SALIVVPEGEKNVELSARN 168 The following BLAST results are available for this feature:
BLAST of DY260003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260003 ID=DY260003; Name=DY260003; organism=Citrus clementina; type=EST; length=1008bpback to top |