DY260005

Overview
NameDY260005
Unique NameDY260005
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length962
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 9.315e-47
Identity = 85/145 (58.62%), Postives = 112/145 (77.24%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYA 627
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F  DYPF+PPKV FRT+++H NINS G +CLDILK+ WSPALTISKVLL ICSLLTD NP DPLV  IA  Y +++A+++  AR WT++YA
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 9.315e-47
Identity = 85/145 (58.62%), Postives = 112/145 (77.24%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYA 627
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F  DYPF+PPKV FRT+++H NINS G +CLDILK+ WSPALTISKVLL ICSLLTD NP DPLV  IA  Y +++A+++  AR WT++YA
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 9.315e-47
Identity = 85/145 (58.62%), Postives = 112/145 (77.24%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYA 627
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GP  S Y GGVF + I F  DYPF+PPKV FRT+++H NINS G +CLDILK+ WSPALTISKVLL ICSLLTD NP DPLV  IA  Y +++A+++  AR WT++YA
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.440e-39
Identity = 69/145 (47.59%), Postives = 105/145 (72.41%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYA 627
            + KRI +E+ +L  DPP  CSAGP  ++++HW ATI+GPS +PY GG+F + I FP DYPF+PPK+ F+T+++H N+++ G L ++IL++ WSPALTI+KVL  I S+   P P  P +P IA +Y +D+ K++  A+ WT ++A
Sbjct:   37 SGKRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEWTLRFA 181          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.068e-34
Identity = 70/145 (48.28%), Postives = 97/145 (66.90%), Query Frame = 1
Query:  199 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYAMG 633
            +RI+KE + L  +P    SA P  E+M ++   I+GP+ SPY GGVF + +  P +YP   PKV F TK++HPNI+  G +CLDILK++WSPAL I  VLL I +LL+ PNPDDPL   IA  ++S++A+    A+ WT+ YA G
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASG 152          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.395e-34
Identity = 69/146 (47.26%), Postives = 98/146 (67.12%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNIN-SNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYA 627
            A KR+ KE+ D+ K PP+ CSA  V +++  W+AT+ GP  SP+  GVF + I  P DYPF+PP + F TK++HPNI  S+G++C ++    WSP L I  VL  I S+LTDPNPD+PL  EIA  +++D+  +   A+ WT+KYA
Sbjct:    3 AHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFST-WSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYA 147          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.822e-34
Identity = 61/125 (48.80%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  253 SAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYA 627
            S G  + +++ W A I GP  +PY GG+F ++I FP DYPF+PPK  F+T ++HPNIN  GS+C++ILK++W+PAL + KVLL I  LL  PNPDDPLVPEI  ++++++ +++  AR +T ++A
Sbjct:   28 SIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHA 152          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.380e-34
Identity = 69/145 (47.59%), Postives = 97/145 (66.90%), Query Frame = 1
Query:  199 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYAMG 633
            +RI+KE + L  +P    SA P  ++M ++   I+GP+ SPY GGVF + +  P +YP   PKV F TK++HPNI+  G +CLDILK++WSPAL I  VLL I +LL+ PNPDDPL   IA  ++S++A+    A+ WT+ YA G
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASG 152          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.302e-34
Identity = 65/146 (44.52%), Postives = 99/146 (67.81%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQ-WSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKYESPARNWTQKYA 627
            +S+R+ KE  DL++ P        V +++FHW  T +GPSDS YAGG F  ++ FP DYPFQPP + F T+++HPN +S G++CL ILK+Q + P++ +  VL  I  LL +PNPDDPLV  IA  Y++D+  ++  AR++ +++A
Sbjct:    8 SSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153          
BLAST of DY260005 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.924e-34
Identity = 65/133 (48.87%), Postives = 88/133 (66.17%), Query Frame = 1
Query:  193 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFQPPKVAFRTKVFHPNINSNGSLCLDILKEQWSPALTISKVLLPICSLLTDPNPDDPLVPEIAPMYQSDKAKY 591
            A KR++ + K LQKDPP   S  P   ++ HW A I GP D+P+ GG F +T+HF  DYP +PP V F +++FHPNI ++GS+CLDIL+ QWSP   ++ VL  I SLL DPNPD P   E A ++  +K +Y
Sbjct:    5 AKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREY 137          
The following BLAST results are available for this feature:
BLAST of DY260005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UB2E3_MOUSE9.315e-4758.62Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN9.315e-4758.62Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN9.315e-4758.62Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
COP10_ARATH1.440e-3947.59Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBC36_ARATH1.068e-3448.28Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBCB_DICDI1.395e-3447.26Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC31_ARATH1.822e-3448.80Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC35_ARATH2.380e-3447.59Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC14_SCHPO5.302e-3444.52Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC3_ARATH6.924e-3448.87Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260005 ID=DY260005; Name=DY260005; organism=Citrus clementina; type=EST; length=962bp
ATTTGTGTTGTTTGACAACAAAGCAAGGGGTTGATAGAGGAGCGAGGCGG
GGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCT
ATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGG
TTCGTTGTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTCAAA
GCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTT
GCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATT
ATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCAT
TCATTTTCCTCCTGATTATCCTTTCCAGCCCCCAAAGGTTGCTTTTAGGA
CCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCCTCTGTCTTGAT
ATCCTTAAAGAACAGTGGAGTCCCGCGCTTACCATTTCAAAGGTCCTGCT
CCCTATCTGCTCCTTGCTTACTGATCCCAATCCCGACGACCCTCTTGTAC
CGGAGATTGCCCCCATGTACCAGTCCGACAAGGCCAAATATGAATCCCCC
GCCAGGAACTGGACACAAAAGTATGCCATGGGATGAAGGTTGCTAGAATT
TGCCGAAAAAGGACCACTTATGAAATACGCTGGCTGGGTCGCCACCATTT
CCTTCCCTCGCCTCGGCAGGCCCACCTTGGTCTCCACCTGGCGCCCGCCC
CCACCTCCCCCGCCGGGACCCTCTCCACTTTCAGTTGACTGCCTGCGCTC
CCCCCTCTCTCTCCGCCACCCCCCGCCGCCTCCCAAACCTCAATCCCCCA
CTCCCTTCATAAAATCCCACCCCCAACCCCTCCCCCCCCCCGCCCCCCAA
CCCACCCTCCCCACCCCACCACCCCCTCCCCTGCCCTGCACCCCCACCCA
CCCCCCATCCCC
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