DY260008

Overview
NameDY260008
Unique NameDY260008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_PSEA7 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=sthA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.095e-16
Identity = 60/201 (29.85%), Postives = 94/201 (46.77%), Query Frame = 1
Query:  103 IYKRLLSNAG------VKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG--QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCE 681
            I K++ S  G      + ++ G    V    VEV    G      A   +IATGSR  R             SD  LSL   P+R ++ G G I  E+ASI+ G+G  VDL+  ++  L   DDE+   ++ +L    + +      + +   + GV +    G++I AD +L+  G+  NT +L L+ VG++V S G  E
Sbjct:   93 ISKQVASRTGYYARNRIDMFTGTASFVDERTVEVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAGVIGCEYASIFSGLGVLVDLIDTRDQLLSFLDDEISDALSYHLRNNNVLIRHNEEYERVEGLDNGVILHLKSGKKIKADALLWCNGRTGNTDKLGLENVGIKVNSRGQVE 293          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_VIBCH (Dihydrolipoyl dehydrogenase OS=Vibrio cholerae GN=lpd PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.095e-16
Identity = 66/219 (30.14%), Postives = 113/219 (51.60%), Query Frame = 1
Query:   37 KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAI-TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVA-----DVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            K D D  +L ++K   I +L G    +     V +  G GK  GPN +EV   +G K   +  + ++A GSR  + P IP ++  I  S +AL L+E+P + +++GGG I +E A+++  +GS +D++   +  +   D +M  V  + ++ +  NL   T +  +   E+G+ V  + G+   A     D VL A G+ PN K L+ +  G+EV   G
Sbjct:   80 KTDIDKVRLWKEKV--INQLTGGLAGMAKMRKVNVVNGYGKFTGPNTIEVDGEEG-KTVVTFDNAIVAAGSRPIKLPFIPHEDPRIWDSTDALELKEVPGKLLIMGGGIIGLEMATVYHSLGSKIDVVEMFDQLIPAADKDMVKVYTKRIKDK-FNLMLETKVTAVEAKEDGIYVSME-GKSAPAQAERYDAVLVAIGRVPNGKLLDAEKAGLEVDERG 293          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_RALEH (Dihydrolipoyl dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=odhL PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.095e-16
Identity = 65/220 (29.55%), Postives = 105/220 (47.73%), Query Frame = 1
Query:   40 IDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDE--ALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKV-ITD---HGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCE 681
            +  D  K+L++K D + ++    + L     V L +G GK VG +  E  Q+D      +AK ++IATGS+A+  P    +  + SD   AL    +PK+  V+G G I +E  S+WR +GS V +L      L   D+ +     + L  +G+       + E+   + GV V  TD     + +  D ++ + G+ PNT  L L AVG+     G  E
Sbjct:   86 VKVDVAKMLKRKDDIVGKMTKGIEFLFRKNKVTLLKGYGKFVGKS-AEGFQVDVAGEVVTAKQVIIATGSKARHLPGIKVDNDLVSDNEGALKFPAVPKKLGVIGAGVIGLELGSVWRRLGSDVTVLEALPAFLGAADEGVAKEAQKQLTKQGLKFSLGVNVNEVTTGKNGVTVKYTDKDGKAQTLEVDRLIVSVGRVPNTDNLGLDAVGLAADQRGFIE 304          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_HALVO (Dihydrolipoyl dehydrogenase OS=Halobacterium volcanii GN=lpdA PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.735e-16
Identity = 65/224 (29.02%), Postives = 115/224 (51.34%), Query Frame = 1
Query:   28 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVT---QLDGTKLSYSAKHILIATGSRAQRAP--IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVI--TDHGE--EIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            +H     D  +L   K+  + +L G  ++L    GV L EG  +    N V +    +  G++ +   +H +IATGSR  + P    G E   +S +AL  + +P+R VV+GGGYI +E ++ +  +G+ V ++   +  L G++ ++  VV +  E  GI++H         + ++G+ V   T+ GE  E  AD VL A G++P T  ++++  G+E    G
Sbjct:   76 IHADPVVDMSQLRDWKSGVVDQLTGGVEKLCKANGVNLVEGTARFKDENAVRIAHGGEGQGSE-TIEFEHCIIATGSRVIQIPGFDFGDEPVWSSRDALEADTVPERLVVVGGGYIGMELSTTFAKLGADVTVVEMLDDILPGYESDVARVVRKRAEELGIDMHLGEGATGWREEDDGIMVTTETEDGEENEYRADKVLVAVGRSPVTDTMDIENAGLEADDRG 298          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_SODGM (Soluble pyridine nucleotide transhydrogenase OS=Sodalis glossinidius (strain morsitans) GN=sthA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.573e-16
Identity = 57/185 (30.81%), Postives = 94/185 (50.81%), Query Frame = 1
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            +++ GE   V  ++V++   D T  + SA++I+IA GSR    P   Q++         SD  L L+  P   ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +E+   ++GV+V    G+ + AD +L+A G+  NT  L L  V +E  S G
Sbjct:  110 QIFTGEASFVDEHQVQIHYGDNTTETLSAENIVIACGSR----PYQPQDVDFDHPRIYDSDSILDLKHDPHHVIIYGAGVIGCEYASIFRGMNVKVDLINTRDRLLAFLDQEMSDALSYHFWENGVVIRHNEEYEEIKGLDDGVEVRFRSGKRMKADCLLYANGRTGNTDTLKLDKVELEADSRG 290          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_HAHCH (Soluble pyridine nucleotide transhydrogenase OS=Hahella chejuensis (strain KCTC 2396) GN=sthA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.666e-16
Identity = 62/211 (29.38%), Postives = 100/211 (47.39%), Query Frame = 1
Query:   46 FDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQ-LDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVE 657
            F + ++LQ     I +   I  +  +   V LY G    +  N +EV   L+G ++ Y  K I+IATGSR    P   +++  T      SD  L L   P+  ++ G G I  E+ASI+ G+G  VDL+   E  L   D E+   ++ +L   G+ +        ++  + GV +    G+ I AD  L+  G+  NT  L L+ +G+E
Sbjct:   80 FSFPRVLQNAERVIGKQVKIRTQFYARNRVDLYRGRASFIDENRIEVRGGLNGKEVLYG-KQIVIATGSR----PYLPEDVDFTHRRIYNSDSILKLSHTPRTLIIYGAGVIGCEYASIFVGLGVKVDLINPGERLLSFLDGEISDALSYHLRDNGVLVRHNEQYDSVVGDDHGVVLTMKSGKRIRADAFLWCNGRTGNTDNLGLENIGLE 285          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_SCHPO (Dihydrolipoyl dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=dld1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.666e-16
Identity = 61/219 (27.85%), Postives = 109/219 (49.77%), Query Frame = 1
Query:   40 IDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTK-LSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDH-----GEEIVADVVLFATGQAPNTKRLNLKAVGVEV 660
            +  +  ++++ K D +  L    + L     V+  +G G  + P  + V  +DG    +  AK+ +IATGS  +  P PG    ++  ++S  ALSL E+PK+  VLGGG I +E  S+W  +G+ V ++  + LP  G   D ++   ++R +  +GI     T +     + + V+V  ++      E    DV+L A G+ P T+ L L  +G+ +
Sbjct:  119 VSVNLSQMMKAKDDSVKSLTSGIEYLFKKNKVEYAKGTGSFIDPQTLSVKGIDGAADQTIKAKNFIIATGSEVK--PFPGVTIDEKKIVSSTGALSLSEVPKKMTVLGGGIIGLEMGSVWSRLGAEVTVV--EFLPAVGGPMDADISKALSRIISKQGIKFKTSTKLLSAKVNGDSVEVEIENMKNNKRETYQTDVLLVAIGRVPYTEGLGLDKLGISM 333          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_AZOVI (Dihydrolipoyl dehydrogenase OS=Azotobacter vinelandii PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.666e-16
Identity = 60/217 (27.65%), Postives = 107/217 (49.31%), Query Frame = 1
Query:   37 KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRAPIP-GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN--LHPRTTIKELIKSEEGVKVITDHGEEIVA-DVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            ++  D   ++ +K   +  L G    L+   GV L+EG GK++   +VEVT  DG+      +++++A+GS+  +  P P  Q++ + S  AL  + +P +  V+G G I +E  S+W  +G+ V +L   +  L   D+++     + L  +G+   L  R T  E+   +  VK +   GE+  A D ++ A G+ P T  L     GV +   G
Sbjct:   83 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERG 299          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_PHOPR (Soluble pyridine nucleotide transhydrogenase OS=Photobacterium profundum GN=sthA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.094e-16
Identity = 54/177 (30.51%), Postives = 89/177 (50.28%), Query Frame = 1
Query:  148 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG--QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            GE   +  + V V   D +   YSA   +IATGSR                SD  L LE  P+  ++ G G I  E+ASI+RG+G  VDL+  +   L   D+E+   ++ +L   G  +    T +++  +++ + +  + G+++ AD +L+A G+  NT +LNL  VG+   S G
Sbjct:  118 GEASFIDAHTVRVKNADNSTDLYSADKFVIATGSRPYHPEGVDFDHSRVYDSDSILQLEHDPRHIIIYGAGVIGSEYASIFRGLGVKVDLINTRHRLLEFLDNEISDSLSYHLWNSGAMIRNGETFEKIEGTDDSIILHLESGKKMRADCLLYANGRTGNTDKLNLNKVGLTPDSRG 294          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_ERWCT (Soluble pyridine nucleotide transhydrogenase OS=Erwinia carotovora subsp. atroseptica GN=sthA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.094e-16
Identity = 55/199 (27.64%), Postives = 97/199 (48.74%), Query Frame = 1
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR-APIPGQELAI-TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            +L+ GE   +  + + V   D T  + +A +I+IATGSR    A +      I  SD  L L+  P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +        +    +GV V    G+++ AD +L+A G+  NT+ L L+ +G+   S G  +  +      + +Y +
Sbjct:  113 ELFSGEASFIDAHTIAVHYPDNTHETLTAANIIIATGSRPYHPAEVDFNHPRIYDSDSILQLDHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFDSIEGLSDGVIVNLKSGKKMKADCLLYANGRTGNTETLGLENIGLSTDSRGQLKVNSMYQTALAHIYAI 311          
The following BLAST results are available for this feature:
BLAST of DY260008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
STHA_PSEA72.095e-1629.85Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
DLDH_VIBCH2.095e-1630.14Dihydrolipoyl dehydrogenase OS=Vibrio cholerae GN=... [more]
DLDH_RALEH2.095e-1629.55Dihydrolipoyl dehydrogenase OS=Ralstonia eutropha ... [more]
DLDH_HALVO2.735e-1629.02Dihydrolipoyl dehydrogenase OS=Halobacterium volca... [more]
STHA_SODGM3.573e-1630.81Soluble pyridine nucleotide transhydrogenase OS=So... [more]
STHA_HAHCH4.666e-1629.38Soluble pyridine nucleotide transhydrogenase OS=Ha... [more]
DLDH_SCHPO4.666e-1627.85Dihydrolipoyl dehydrogenase, mitochondrial OS=Schi... [more]
DLDH_AZOVI4.666e-1627.65Dihydrolipoyl dehydrogenase OS=Azotobacter vinelan... [more]
STHA_PHOPR6.094e-1630.51Soluble pyridine nucleotide transhydrogenase OS=Ph... [more]
STHA_ERWCT6.094e-1627.64Soluble pyridine nucleotide transhydrogenase OS=Er... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260008 ID=DY260008; Name=DY260008; organism=Citrus clementina; type=EST; length=923bp
GCTTATGCAAGGAGTTATGGATGGGAGGTACACGAGAAAATTGACTTCGA
CTGGAAAAAACTTCTGCAAAAGAAGACAGATGAGATACTCAGATTAAATG
GAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAATTATATGAAGGG
GAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGG
CACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGGAAGTA
GGGCTCAACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGAC
GAGGCATTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGG
AGGGTACATTGCTGTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTA
CTGTGGATCTATTATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGAT
GAAATGCGGGCAGTAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTT
GCACCCGAGGACTACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAA
AAGTTATTACAGATCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTT
GCCACTGGCCAGGCACCCAATACAAAAAGGTTGAATTTGAAAGCTGTTGG
TGTGGAAGTTTAATCAACAGGGACCTGTGAGGGTGGAACGAAAACTCCCC
CCCAAACGTCCCCAGTATATGGGCTGGTGGTGATGGAAACTAAACCAAGG
AATCCTACCCCCGGGCCCCTTGGAGGGAGGGAAAGTCCCTCTCCAAAAAC
TGTCTTTCGGGGGAACCCCCCCCCACAACCCAACCAACAACGACGGTCCC
CCGCGGCTCGACATCTACCACCCCCCCCCCCCCTCCGCCACGCGCCTCTC
CCACACGGCACATCCACACAACG
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