DY260008

Overview
NameDY260008
Unique NameDY260008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: TYTR_TRYCR (Trypanothione reductase OS=Trypanosoma cruzi GN=TPR PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.224e-25
Identity = 73/229 (31.88%), Postives = 124/229 (54.15%), Query Frame = 1
Query:   16 YGWEVHEK-IDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIVGPNEVEVTQ----LDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASI---WRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT-DHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            +GWE     +  +WKKL+  K + +L +N  Y+ +  +  G++ + G G +   N V V +        K     ++IL+A+GS      IPG E  I+S+EA  L E P+R + +GGG+I+VEFA I   ++     V L +R E+ LRGFD  +R  + + L   GI +  +    ++  + +G K +T + G+++  D+V+ A G++P TK L L+  GV + + G
Sbjct:   80 FGWEFDRTTLRAEWKKLIAVKDEAVLNINKSYEEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETENILLASGSWPHMPNIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGG 308          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: TRXR1_PONAB (Thioredoxin reductase 1, cytoplasmic OS=Pongo abelii GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 3.224e-25
Identity = 72/228 (31.58%), Postives = 121/228 (53.07%), Query Frame = 1
Query:    7 ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG------VKVITDHGEEIVA---DVVLFATGQAPNTKRLNLKAVGVEV 660
            +R+YGW+V E +  DW ++++   + I  LN  Y+  L    V      G+ +GP+ ++ T   G +  YSA+  LIATG R +   IPG +E  I+SD+  SL   P + +++G  Y+A+E A    G+G  V ++ R  L LRGFD +M   +  ++E  GI    +    ++ + E G      V   + + EEI+    + VL A G+   T+++ L+ VGV++
Sbjct:   83 SRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLIVGASYVALECAGFLAGIGLDVTVMVRSIL-LRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVLLAIGRDACTRKIGLETVGVKI 309          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: TRXR1_PIG (Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 4.210e-25
Identity = 74/228 (32.46%), Postives = 120/228 (52.63%), Query Frame = 1
Query:    7 ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG------VKVITDHGEEIVA---DVVLFATGQAPNTKRLNLKAVGVEV 660
            +R+YGW V E I  DW+++ +   + I  LN  Y+  L    V      G+ VGP+ ++ T   G +  YSA+  LIATG R +   IPG +E  I+SD+  SL   P + +V+G  Y+A+E A    G+G  V ++ R  L LRGFD +M   +  ++E  GI    +    ++ + E G      V   + + EEI+    + V+ A G+   T+++ L+ VGV++
Sbjct:   83 SRNYGWNVEETIKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENAYGQFVGPHRIKATNNKGKEKIYSAEKFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL-LRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKI 309          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: TRXR1_HUMAN (Thioredoxin reductase 1, cytoplasmic OS=Homo sapiens GN=TXNRD1 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 4.210e-25
Identity = 72/228 (31.58%), Postives = 121/228 (53.07%), Query Frame = 1
Query:    7 ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG------VKVITDHGEEIVA---DVVLFATGQAPNTKRLNLKAVGVEV 660
            +R+YGW+V E +  DW ++++   + I  LN  Y+  L    V      G+ +GP+ ++ T   G +  YSA+  LIATG R +   IPG +E  I+SD+  SL   P + +V+G  Y+A+E A    G+G  V ++ R  L LRGFD +M   +  ++E  GI    +    ++ + E G      V   + + EEI+    + V+ A G+   T+++ L+ VGV++
Sbjct:  233 SRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL-LRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKI 459          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: GSHR_CAEEL (Probable glutathione reductase 2 OS=Caenorhabditis elegans GN=trxr-2 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 7.182e-25
Identity = 72/223 (32.29%), Postives = 116/223 (52.02%), Query Frame = 1
Query:    4 YARSYGWEV--HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDG--TKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIK--ELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGV 654
            +A  YGW     EKI  DW  L +   D +   N IY+  L+   +  +    + V  +++ +T  D   TK   SA +++I+TG R +   IPG EL ITSD+  +L  +P + +++GGGY+A+E A         V++L R  +PL+GFD +    V  +L+  G+ +     ++  E + S++ V   T +G     D V++A G+ PN K LNL   GV
Sbjct:   90 HADKYGWNGIDQEKIKHDWNVLSKNVNDRVKANNWIYRVQLNQKKINYFNAYAEFVDKDKIVITGTDKNKTKNFLSAPNVVISTGLRPKYPNIPGAELGITSDDLFTLASVPGKTLIVGGGYVALECAGFLSAFNQNVEVLVR-SIPLKGFDRDCVHFVMEHLKTTGVKVKEHVEVERVEAVGSKKKV-TFTGNGGVEEYDTVIWAAGRVPNLKSLNLDNAGV 310          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: TRXR1_MOUSE (Thioredoxin reductase 1, cytoplasmic OS=Mus musculus GN=Txnrd1 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 1.225e-24
Identity = 72/228 (31.58%), Postives = 117/228 (51.32%), Query Frame = 1
Query:    7 ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG------VKVITDHGEEIVA---DVVLFATGQAPNTKRLNLKAVGVEV 660
            +R+YGW+V + +  DW+K+ +     I  LN  Y+  L    V      G+ +GP+ +  T   G +  YSA+  LIATG R +   IPG +E  I+SD+  SL   P + +V+G  Y+A+E A    G+G  V ++ R  L LRGFD +M   +  ++E  GI    +    ++ + E G      V   + + EE +    + VL A G+   T+ + L+ VGV++
Sbjct:  197 SRNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKVVYENAYGRFIGPHRIVATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL-LRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLRVTAQSTNSEETIEGEFNTVLLAVGRDSCTRTIGLETVGVKI 423          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: GSHR_YEAST (Glutathione reductase OS=Saccharomyces cerevisiae GN=GLR1 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.225e-24
Identity = 67/175 (38.29%), Postives = 97/175 (55.43%), Query Frame = 1
Query:   34 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKV 555
            E + F+W +  QK+   + RLNGIY++ L    V +  G  +      VEV + D T   YSA HIL+ATG +A     IPG EL   SD    LEE PK+ VV+G GYI +E A ++ G+GS   L+ R E  LR FD+ ++  +  +    GIN+H  + I ++ K+ E  K+
Sbjct:   99 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKL 273          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: TRXR1_BOVIN (Thioredoxin reductase 1, cytoplasmic OS=Bos taurus GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 2.090e-24
Identity = 74/228 (32.46%), Postives = 121/228 (53.07%), Query Frame = 1
Query:    7 ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG----VKVI---TDHGEEIVAD--VVLFATGQAPNTKRLNLKAVGVEV 660
            +R+YGW V E +  DW+++ +   + I  LN  Y+  L    V      G+ VGP+ ++ T   G +  YSA+  LIATG R +   IPG +E  I+SD+  SL   P + +V+G  Y+A+E A    G+G  V ++ R  L LRGFD +M   +  +++  GI    +    ++ + E G    ++VI   TD  + I  +   VL A G+   T+++ L+ VGV++
Sbjct:   83 SRNYGWNVEETVKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL-LRGFDQDMANKIGEHMQEHGIKFIRQFVPIKVEQIEAGTPGRLRVIAKSTDSDQTIEGEYNTVLLAIGRDACTRKIGLENVGVKI 309          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_DICDI (Dihydrolipoyl dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=lpd PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.090e-24
Identity = 74/233 (31.76%), Postives = 114/233 (48.93%), Query Frame = 1
Query:   40 IDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG--QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT-------DHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGG----TKTP 699
            ++ D   ++Q K   +  L    + L     VK  +G GKI GPN VEVT  DG+  +   K+I+IATGS     P     +E  I+S  AL+L+ +PK+ +V+GGG I +E  S+W  +GS   ++        G D E+     ++LE + +  H  T +  ++K  +G   +T            + AD VL + G+ PNT  L L++VG+     G  E G    TK P
Sbjct:   96 VELDLGAMMQYKDKSVSGLTSGIEGLFKKNKVKYDKGFGKITGPNTVEVTLNDGSVKTIETKNIVIATGSEVTSLPNVNIDEESIISSTGALALKSVPKKLIVIGGGVIGLELGSVWSRLGSETTVVEFTNRIAAGADGEVAKKFQKSLEKQHMKFHLETKVTSVVKKSDGKVTVTVEQVGAGGFTGTLEADAVLVSVGRRPNTSGLGLESVGIPTDKAGRVEVGDHFNTKVP 328          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_MYCPN (Dihydrolipoyl dehydrogenase OS=Mycoplasma pneumoniae GN=pdhD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.564e-24
Identity = 68/219 (31.05%), Postives = 124/219 (56.62%), Query Frame = 1
Query:    4 YARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG------QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEE--IVADVVLFATGQAPNTKRLN 636
            +A+ YG  ++ ++  +W +LL++K   + +L G  K ++++A  +   GE K++ PN VEV        +Y+ K I++ATGSR +   +PG          I S +ALSLE +P++ VV+GGG I +EFA ++  +GS V +L   +  L  FD E+  +VA+ L+ + + +    T  ++ ++       + +G+E  +V D +L + G+ PNT+ L+
Sbjct:   63 HAQDYGISINGQVALNWNQLLEQKGKVVSKLVGGVKAIIASAKAETVMGEAKVLDPNTVEVAGK-----TYTTKSIVVATGSRPRYLTLPGFAEARQNGFVIDSTQALSLEGVPRKLVVVGGGVIGIEFAFLYASLGSEVTILQGVDRILEIFDTEVSDLVAKLLQTKNVKI---ITNAQVTRANNNEVFYSQNGQEGSVVGDRILVSIGRIPNTECLD 273          
The following BLAST results are available for this feature:
BLAST of DY260008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
TYTR_TRYCR3.224e-2531.88Trypanothione reductase OS=Trypanosoma cruzi GN=TP... [more]
TRXR1_PONAB3.224e-2531.58Thioredoxin reductase 1, cytoplasmic OS=Pongo abel... [more]
TRXR1_PIG4.210e-2532.46Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa... [more]
TRXR1_HUMAN4.210e-2531.58Thioredoxin reductase 1, cytoplasmic OS=Homo sapie... [more]
GSHR_CAEEL7.182e-2532.29Probable glutathione reductase 2 OS=Caenorhabditis... [more]
TRXR1_MOUSE1.225e-2431.58Thioredoxin reductase 1, cytoplasmic OS=Mus muscul... [more]
GSHR_YEAST1.225e-2438.29Glutathione reductase OS=Saccharomyces cerevisiae ... [more]
TRXR1_BOVIN2.090e-2432.46Thioredoxin reductase 1, cytoplasmic OS=Bos taurus... [more]
DLDH_DICDI2.090e-2431.76Dihydrolipoyl dehydrogenase, mitochondrial OS=Dict... [more]
DLDH_MYCPN3.564e-2431.05Dihydrolipoyl dehydrogenase OS=Mycoplasma pneumoni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YO21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260008 ID=DY260008; Name=DY260008; organism=Citrus clementina; type=EST; length=923bp
GCTTATGCAAGGAGTTATGGATGGGAGGTACACGAGAAAATTGACTTCGA
CTGGAAAAAACTTCTGCAAAAGAAGACAGATGAGATACTCAGATTAAATG
GAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAATTATATGAAGGG
GAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGG
CACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGGAAGTA
GGGCTCAACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGAC
GAGGCATTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGG
AGGGTACATTGCTGTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTA
CTGTGGATCTATTATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGAT
GAAATGCGGGCAGTAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTT
GCACCCGAGGACTACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAA
AAGTTATTACAGATCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTT
GCCACTGGCCAGGCACCCAATACAAAAAGGTTGAATTTGAAAGCTGTTGG
TGTGGAAGTTTAATCAACAGGGACCTGTGAGGGTGGAACGAAAACTCCCC
CCCAAACGTCCCCAGTATATGGGCTGGTGGTGATGGAAACTAAACCAAGG
AATCCTACCCCCGGGCCCCTTGGAGGGAGGGAAAGTCCCTCTCCAAAAAC
TGTCTTTCGGGGGAACCCCCCCCCACAACCCAACCAACAACGACGGTCCC
CCGCGGCTCGACATCTACCACCCCCCCCCCCCCTCCGCCACGCGCCTCTC
CCACACGGCACATCCACACAACG
back to top