DY260008

Overview
NameDY260008
Unique NameDY260008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_VIBVY (Soluble pyridine nucleotide transhydrogenase OS=Vibrio vulnificus (strain YJ016) GN=sthA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.831e-20
Identity = 64/199 (32.16%), Postives = 105/199 (52.76%), Query Frame = 1
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QRAPIP-GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            +L  G  +    + + VTQ DGT+  Y+A   +IATGSR  Q A +    E    SD  LSL+  P+  ++ G G I  E+ASI+RG+G   DL+  ++  L   D+E+   ++ +    G+ +    T + +  +E+GV V    G+++ AD +L+A G+  NT +LNL AVG++  S G  +       +   VY +
Sbjct:  111 QLIFGTARFTDAHTISVTQNDGTEEVYTADKFVIATGSRPYQPADVDFNHERIYDSDSILSLKHDPRHIIIYGAGVIGCEYASIFRGLGVKTDLINTRDRLLAFLDNEVSDALSYHFWNSGVVIRNDETYERIEGTEDGVIVHLQSGKKMKADCLLYANGRTGNTDKLNLPAVGLQGDSRGQLKVDGNYQTEVEHVYAV 309          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_VIBVU (Soluble pyridine nucleotide transhydrogenase OS=Vibrio vulnificus GN=sthA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.831e-20
Identity = 64/199 (32.16%), Postives = 105/199 (52.76%), Query Frame = 1
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QRAPIP-GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            +L  G  +    + + VTQ DGT+  Y+A   +IATGSR  Q A +    E    SD  LSL+  P+  ++ G G I  E+ASI+RG+G   DL+  ++  L   D+E+   ++ +    G+ +    T + +  +E+GV V    G+++ AD +L+A G+  NT +LNL AVG++  S G  +       +   VY +
Sbjct:  111 QLIFGTARFTDAHTISVTQNDGTEEVYTADKFVIATGSRPYQPADVDFNHERIYDSDSILSLKHDPRHIIIYGAGVIGCEYASIFRGLGVKTDLINTRDRLLAFLDNEVSDALSYHFWNSGVVIRNDETYERIEGTEDGVIVHLQSGKKMKADCLLYANGRTGNTDKLNLPAVGLQGDSRGQLKVDGNYQTEVEHVYAV 309          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_RAT (Dihydrolipoyl dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Dld PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.831e-20
Identity = 75/249 (30.12%), Postives = 120/249 (48.19%), Query Frame = 1
Query:   13 SYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG---VKVITDHG---EEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            S G E+ E +  + +K++++K   +  L G    L     V    G GKI G N+V  T  DG+      K+ILIATGS     P PG    ++  ++S  ALSL+++P++ VV+G G I VE  S+W+ +G+ V  + F   +   G D E+     R L+ +G      T +    K  +G   V V    G   E I  DV+L   G+ P T+ L L+ +G+E+   G     T+   +   ++ +
Sbjct:  108 SRGIEIPE-VRLNLEKMMEQKRSAVKALTGGIAHLFKQNKVVHVNGFGKITGKNQVTATTADGSTQVIGTKNILIATGSEV--TPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSVEAASGGKAEVITCDVLLVCIGRRPFTQNLGLEELGIELDPKGRIPVNTRFQTKIPNIFAI 353          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_VIBSL (Soluble pyridine nucleotide transhydrogenase OS=Vibrio splendidus (strain LGP32) GN=sthA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.391e-20
Identity = 60/195 (30.77%), Postives = 101/195 (51.79%), Query Frame = 1
Query:  148 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG--QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            G  + +  + + V Q DGT+  YSA   +IATGSR  +        E    SD  LSL+  P+  ++ G G I  E+ASI+RG+G   DL+  ++  L   D+E    ++ +    G+ +    T +++  +++GV +  + G+++ AD +L+A G+  NT +LNL AVG+E  S G     +        VY +
Sbjct:  115 GTARFIDTHTISVMQSDGTEEHYSADKFVIATGSRPYQPDNVDFMHERVYDSDSILSLKHDPQHIIIYGAGVIGCEYASIFRGLGVKTDLINTRDRLLSFLDNETSDALSYHFWNSGVVIRNDETFEKIEGTDDGVIIHLESGKKMRADCLLYANGRTGNTDKLNLGAVGLEADSRGQVSVNSNYQTSVEHVYAV 309          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_MOUSE (Dihydrolipoyl dehydrogenase, mitochondrial OS=Mus musculus GN=Dld PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.391e-20
Identity = 74/249 (29.72%), Postives = 120/249 (48.19%), Query Frame = 1
Query:   13 SYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG---VKVITDHG---EEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            S G E+ E +  + +K++++K   +  L G    L     V    G GKI G N+V  T+ DG+      K+IL+ATGS     P PG    ++  ++S  ALSL+++P++ VV+G G I VE  S+W+ +G+ V  + F   +   G D E+     R L+ +G      T +    K  +G   V V    G   E I  DV+L   G+ P T+ L L+ +G+E+   G      +   +   +Y +
Sbjct:  108 SRGIEIPE-VRLNLEKMMEQKHSAVKALTGGIAHLFKQNKVVHVNGFGKITGKNQVTATKADGSTQVIDTKNILVATGSEV--TPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQRQGFKFKLNTKVTGATKKSDGKIDVSVEAASGGKAEVITCDVLLVCIGRRPFTQNLGLEELGIELDPKGRIPVNNRFQTKIPNIYAI 353          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEAE (Dihydrolipoyl dehydrogenase OS=Pseudomonas aeruginosa GN=lpdV PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.078e-20
Identity = 70/207 (33.82%), Postives = 111/207 (53.62%), Query Frame = 1
Query:   49 DWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI-PGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE--EIVADVVLFATGQAPNTKRLNLKAVGVEV 660
            D  + ++ K   + RL      LL   GV + +G  +I+    V V    G       +H+L+A GS++   PI P     I+S EAL+   LPKR VV+GGGYI +E  + +R +G  V ++  +   L G+D+E+   VA+ L   G+ L+   ++  L  SE GV+V    GE  EI AD VL A G+ P ++  NL+++G+++
Sbjct:   84 DIARTVEWKDAIVDRLTSGVAALLKKHGVDVVQGWARILDGKSVAVELAGGGSQRIECEHLLLAAGSQSVELPILPLGGKVISSTEALAPGSLPKRLVVVGGGYIGLELGTAYRKLGVEVAVVEAQPRILPGYDEELTKPVAQALRRLGVELYLGHSL--LGPSENGVRVRDGAGEEREIAADQVLVAVGRKPRSEGWNLESLGLDM 288          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_VIBPA (Soluble pyridine nucleotide transhydrogenase OS=Vibrio parahaemolyticus GN=sthA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.956e-20
Identity = 58/177 (32.77%), Postives = 97/177 (54.80%), Query Frame = 1
Query:  148 GEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG--QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            G  + +  + + V Q DGT+ +YSA   +IATGSR  R        E    SD  LSL+  P+  ++ G G I  E+ASI+RG+G   DL+  ++  L   D+E+   ++ +    G+ +    T +++  +E+GV +    G+++ AD +L+A G+  NT +L+L  VG+E  S G
Sbjct:  115 GTARFIDTHSIAVMQNDGTEETYSADKFVIATGSRPYRPSDVDFLHERIYDSDSILSLKHDPRHIIIYGAGVIGCEYASIFRGLGVKTDLINTRDRLLEFLDNEVSDALSYHFWNSGVVIRNDETYEKIEGTEDGVIIHLQSGKKMRADCLLYANGRTGNTDKLSLDVVGLESDSRG 291          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_SERP5 (Soluble pyridine nucleotide transhydrogenase OS=Serratia proteamaculans (strain 568) GN=sthA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.187e-19
Identity = 59/199 (29.65%), Postives = 100/199 (50.25%), Query Frame = 1
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP--GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            KL+ G+ + +  N V V+ +DGT+ +  A HI+IA GSR                SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  +++GV V    G+++ AD +L+A G+  NT  L L+ VG+E  S G  +  +      S +Y +
Sbjct:  110 KLFAGDARFIDANTVSVSYMDGTQDTIRADHIVIACGSRPYNPSSVDFNHPRIYNSDSILELNHEPRHVIIYGAGVIGCEYASIFRGLNVKVDLINTRDRLLAFLDQEMSDSLSYHFWNNGVVIRHNEEFEKIEGTDDGVIVHLKSGKKVKADCLLYANGRTGNTDSLGLENVGLESDSRGLLKVNSMYQTALSHIYAV 308          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: MERA_STAES (Mercuric reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=merA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.550e-19
Identity = 64/194 (32.99%), Postives = 102/194 (52.58%), Query Frame = 1
Query:  106 YKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA--ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKV-ITDHGEE--IVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            Y  L+   G  L  GE   +    ++V   + T  S+     LIATG+      IPG      +TS  AL L+E+P+R  V+G GYIA E   ++  +G+ V L+ R E   + +D E+   +  +L  +G+NL    T +++ ++ +   + I  +G+E  I AD VL ATG+ PNT+ LNL++ GV+    G
Sbjct:  180 YIDLIEEYGFDLIRGEASFIDDKTIQVNGQNITSKSF-----LIATGASPAVPEIPGMNEVDYLTSTSALELKEVPQRLAVIGSGYIAAELGQMFHNLGTEVTLMQRSERLFKTYDPEISEAIDESLTEQGLNLITGVTYQKVEQNGKSTSIYIEVNGQEQVIEADQVLVATGRKPNTETLNLESAGVKTGKKG 368          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: MERA_STAAU (Mercuric reductase OS=Staphylococcus aureus GN=merA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.550e-19
Identity = 64/194 (32.99%), Postives = 102/194 (52.58%), Query Frame = 1
Query:  106 YKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA--ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKV-ITDHGEE--IVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            Y  L+   G  L  GE   +    ++V   + T  S+     LIATG+      IPG      +TS  AL L+E+P+R  V+G GYIA E   ++  +G+ V L+ R E   + +D E+   +  +L  +G+NL    T +++ ++ +   + I  +G+E  I AD VL ATG+ PNT+ LNL++ GV+    G
Sbjct:  180 YIDLIEEYGFDLIRGEASFIDDKTIQVNGQNITSKSF-----LIATGASPAVPEIPGMNEVDYLTSTSALELKEVPQRLAVIGSGYIAAELGQMFHNLGTEVTLMQRSERLFKTYDPEISEAIDESLTEQGLNLITGVTYQKVEQNGKSTSIYIEVNGQEQVIEADQVLVATGRKPNTETLNLESAGVKTGKKG 368          
The following BLAST results are available for this feature:
BLAST of DY260008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
STHA_VIBVY1.831e-2032.16Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_VIBVU1.831e-2032.16Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
DLDH_RAT1.831e-2030.12Dihydrolipoyl dehydrogenase, mitochondrial OS=Ratt... [more]
STHA_VIBSL2.391e-2030.77Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
DLDH_MOUSE2.391e-2029.72Dihydrolipoyl dehydrogenase, mitochondrial OS=Mus ... [more]
DLDH1_PSEAE4.078e-2033.82Dihydrolipoyl dehydrogenase OS=Pseudomonas aerugin... [more]
STHA_VIBPA6.956e-2032.77Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_SERP51.187e-1929.65Soluble pyridine nucleotide transhydrogenase OS=Se... [more]
MERA_STAES1.550e-1932.99Mercuric reductase OS=Staphylococcus epidermidis (... [more]
MERA_STAAU1.550e-1932.99Mercuric reductase OS=Staphylococcus aureus GN=mer... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260008 ID=DY260008; Name=DY260008; organism=Citrus clementina; type=EST; length=923bp
GCTTATGCAAGGAGTTATGGATGGGAGGTACACGAGAAAATTGACTTCGA
CTGGAAAAAACTTCTGCAAAAGAAGACAGATGAGATACTCAGATTAAATG
GAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAATTATATGAAGGG
GAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGG
CACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGGAAGTA
GGGCTCAACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGAC
GAGGCATTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGG
AGGGTACATTGCTGTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTA
CTGTGGATCTATTATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGAT
GAAATGCGGGCAGTAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTT
GCACCCGAGGACTACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAA
AAGTTATTACAGATCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTT
GCCACTGGCCAGGCACCCAATACAAAAAGGTTGAATTTGAAAGCTGTTGG
TGTGGAAGTTTAATCAACAGGGACCTGTGAGGGTGGAACGAAAACTCCCC
CCCAAACGTCCCCAGTATATGGGCTGGTGGTGATGGAAACTAAACCAAGG
AATCCTACCCCCGGGCCCCTTGGAGGGAGGGAAAGTCCCTCTCCAAAAAC
TGTCTTTCGGGGGAACCCCCCCCCACAACCCAACCAACAACGACGGTCCC
CCGCGGCTCGACATCTACCACCCCCCCCCCCCCTCCGCCACGCGCCTCTC
CCACACGGCACATCCACACAACG
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