DY260008

Overview
NameDY260008
Unique NameDY260008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_COLP3 (Soluble pyridine nucleotide transhydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=sthA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.024e-19
Identity = 61/182 (33.52%), Postives = 96/182 (52.75%), Query Frame = 1 
Query:  133 VKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            V+  +G+   +  + + ++  DG+    SAK I+IATGSR  R      +      SD  LSL+  P+  ++ G G I  E+ASI+RG+G  VDL+  +E  L   D EM   ++ +L   G+ +     I+ +  SE+ V V    G+++ AD +LFA G+  NT  LNL A G++    G
Sbjct:  110 VEHIQGQASFIDAHTISISHPDGSVEKISAKQIMIATGSRPYRPDDIDFDHPRVYDSDSILSLKHAPQHVIIYGAGVIGSEYASIFRGLGVKVDLINTRERLLSFLDTEMSDSLSYHLWNSGVVIRHGEEIERVESSEDAVIVHLKSGKKMRADCLLFANGRTGNTADLNLAAAGLKADGRG 291
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_YERPY (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=sthA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 60/199 (30.15%), Postives = 99/199 (49.75%), Query Frame = 1 
Query:  139 LYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV V    G+++ AD +L+A G+  NT  L L+ +G+E  S G  +  +      S VY +
Sbjct:  112 MFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAV 309
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_YERPS (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pseudotuberculosis GN=sthA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 60/199 (30.15%), Postives = 99/199 (49.75%), Query Frame = 1 
Query:  139 LYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV V    G+++ AD +L+A G+  NT  L L+ +G+E  S G  +  +      S VY +
Sbjct:  112 MFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAV 309
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_YERPP (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pestis (strain Pestoides F) GN=sthA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 60/199 (30.15%), Postives = 99/199 (49.75%), Query Frame = 1 
Query:  139 LYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV V    G+++ AD +L+A G+  NT  L L+ +G+E  S G  +  +      S VY +
Sbjct:  112 MFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAV 309
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_YERPN (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=sthA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 60/199 (30.15%), Postives = 99/199 (49.75%), Query Frame = 1 
Query:  139 LYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV V    G+++ AD +L+A G+  NT  L L+ +G+E  S G  +  +      S VY +
Sbjct:  112 MFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAV 309
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_YERPG (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=sthA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 60/199 (30.15%), Postives = 99/199 (49.75%), Query Frame = 1 
Query:  139 LYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV V    G+++ AD +L+A G+  NT  L L+ +G+E  S G  +  +      S VY +
Sbjct:  112 MFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAV 309
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_YERPE (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pestis GN=sthA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 60/199 (30.15%), Postives = 99/199 (49.75%), Query Frame = 1 
Query:  139 LYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV V    G+++ AD +L+A G+  NT  L L+ +G+E  S G  +  +      S VY +
Sbjct:  112 MFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAV 309
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_YERPB (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=sthA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 60/199 (30.15%), Postives = 99/199 (49.75%), Query Frame = 1 
Query:  139 LYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV V    G+++ AD +L+A G+  NT  L L+ +G+E  S G  +  +      S VY +
Sbjct:  112 MFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAV 309
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_YERPA (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=sthA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 60/199 (30.15%), Postives = 99/199 (49.75%), Query Frame = 1 
Query:  139 LYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV V    G+++ AD +L+A G+  NT  L L+ +G+E  S G  +  +      S VY +
Sbjct:  112 MFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAV 309
[Close]
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_YERP3 (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=sthA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 60/199 (30.15%), Postives = 99/199 (49.75%), Query Frame = 1 
Query:  139 LYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP---GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            ++ G+   +  N V V   DGT  +  A +I+IATGSR  R P+      E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV V    G+++ AD +L+A G+  NT  L L+ +G+E  S G  +  +      S VY +
Sbjct:  112 MFSGDASFIDANTVNVRYADGTSDTLQADNIVIATGSRPYR-PVNVDFNHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTTDGVIVHLKSGKKVKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAV 309
The following BLAST results are available for this feature:
BLAST of DY260008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
STHA_COLP32.024e-1933.52Soluble pyridine nucleotide transhydrogenase OS=Co... [more]
STHA_YERPY2.643e-1930.15Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPS2.643e-1930.15Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPP2.643e-1930.15Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPN2.643e-1930.15Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPG2.643e-1930.15Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPE2.643e-1930.15Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPB2.643e-1930.15Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPA2.643e-1930.15Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERP32.643e-1930.15Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260008 ID=DY260008; Name=DY260008; organism=Citrus clementina; type=EST; length=923bp
GCTTATGCAAGGAGTTATGGATGGGAGGTACACGAGAAAATTGACTTCGA
CTGGAAAAAACTTCTGCAAAAGAAGACAGATGAGATACTCAGATTAAATG
GAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAATTATATGAAGGG
GAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGG
CACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGGAAGTA
GGGCTCAACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGAC
GAGGCATTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGG
AGGGTACATTGCTGTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTA
CTGTGGATCTATTATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGAT
GAAATGCGGGCAGTAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTT
GCACCCGAGGACTACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAA
AAGTTATTACAGATCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTT
GCCACTGGCCAGGCACCCAATACAAAAAGGTTGAATTTGAAAGCTGTTGG
TGTGGAAGTTTAATCAACAGGGACCTGTGAGGGTGGAACGAAAACTCCCC
CCCAAACGTCCCCAGTATATGGGCTGGTGGTGATGGAAACTAAACCAAGG
AATCCTACCCCCGGGCCCCTTGGAGGGAGGGAAAGTCCCTCTCCAAAAAC
TGTCTTTCGGGGGAACCCCCCCCCACAACCCAACCAACAACGACGGTCCC
CCGCGGCTCGACATCTACCACCCCCCCCCCCCCTCCGCCACGCGCCTCTC
CCACACGGCACATCCACACAACG
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