DY260008

Overview
NameDY260008
Unique NameDY260008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_THESC (Dihydrolipoyl dehydrogenase OS=Thermus scotoductus GN=lpd PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.889e-19
Identity = 74/243 (30.45%), Postives = 113/243 (46.50%), Query Frame = 1
Query:   19 GWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG-----EEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            G+ +  K + D KKL   +   + +L G    LL    V+L  G  +  GP E+EV        +Y A+  +IATGS        P  E    S  AL +EE +PKR +V+GGG + +E   I+  +GS V L+      L   D E  A++ + LE  G+ +   T      K ++G+ V+ +       EEIV D +L A G+ P T+ L L+  GV+V   G  +   +       VY +
Sbjct:   67 GFGLKAKPELDLKKLGAWRDGVVKKLTGGVAGLLKGNKVELLRGFARFKGPREIEVNGE-----TYGAQSFIIATGSEPMPLKGFPFGEDVWDSTRALRVEEGIPKRLLVIGGGAVGLELGQIYHRLGSEVTLIEYMPEILPAGDRETAALLRKALEKEGLKVRTGTKAVGYEKKQDGLHVLLEAAQGGSQEEIVVDKILVAVGRRPRTEGLGLEKAGVKVDERGFIQVNARMETSAPGVYAI 304          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_YERE8 (Soluble pyridine nucleotide transhydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=sthA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.691e-19
Identity = 58/199 (29.15%), Postives = 98/199 (49.25%), Query Frame = 1
Query:  136 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG--QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            +++ G+   +  N + V   DGT  +  A +I+IATGSR  R        E    SD  L L   P+  ++ G G I  E+ASI+RG+   VDL+  ++  L   D EM   ++ +    G+ +      +++  + +GV V    G+++ AD +L+A G+  NT  L L+ +G+E  S G  +  +      S VY +
Sbjct:  111 QMFSGDASFIDANTINVRYADGTNDTLRADNIVIATGSRPYRPANVDFTHERIYDSDTILQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTVDGVIVHLKSGKKVKADCLLYANGRTGNTSGLGLEKIGLEADSRGLLKVNSMYQTALSHVYAV 309          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: DLDH_MANSE (Dihydrolipoyl dehydrogenase OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.691e-19
Identity = 77/243 (31.69%), Postives = 119/243 (48.97%), Query Frame = 1
Query:   37 KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKV--ITDHG------EEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGL 726
            ++ F++K ++  K + +  L G    L     VKL  G G IV PN+VEV    G + + + K+ILIATGS     P PG    ++  ITS  ALSLE +PK+ +V+G G I +E  S+++ +G+ V  + F   +   G D E+ +   R L  +G+     T +  + K    VKV  ++  G      E +  DVVL + G+ P TK L L  VG+ +   G      K       +Y +
Sbjct:  103 EVKFNFKAMMDYKVNAVKALTGGIAMLFQKNKVKLVRGAGTIVAPNKVEVKGEKGVE-TVNTKNILIATGSEV--TPFPGVTFDEKQIITSTGALSLESVPKKMLVIGAGVIGLELGSVYQRLGADVTAIEFLGSIGGIGIDMEV-SKDYRILAKQGMKFKLETKVLGVKKEGSTVKVEDVSIEGAKGGNKETMDCDVVLISIGRRPYTKDLGLDKVGIALDDRGRVPVNNKFQTTVPGIYAI 341          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: TRXR2_BOVIN (Thioredoxin reductase 2, mitochondrial OS=Bos taurus GN=TXNRD2 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.312e-18
Identity = 74/261 (28.35%), Postives = 119/261 (45.59%), Query Frame = 1
Query:    7 ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-------VKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYGLVVMETKPRNPTP 762
            A  YGW V +     W  L     + +  LN  ++  L +  VK +  +   V  + V      G +   SA+HI+IATG R +    I G  E  ITSD+   L+E P + +V+G  Y+A+E A +  G+G    ++ R  +PLR FD +M ++V  ++ G G  +  R    E ++   G       V + +D  +    D VL+A G+ P T  LNL+  GV                 T+PV G ++++ +     P
Sbjct:   98 APHYGWGVAQA-PHSWATLADAVQNHVKSLNWGHRIQLQDRKVKYFNVKASFVDTHTVCGVSKGGEETLLSAEHIVIATGGRPRYPTHIEGALEYGITSDDLFWLKESPGKTLVVGASYVALECAGLLTGLGLDTTVMIR-SVPLRAFDQQMASLVTEHMAGHGTRI-LRGCAPEKVEKLPGQQLRVTWVDLTSDRKDAGTFDTVLWAIGRVPETASLNLEKAGV----------------HTNPVTGKILVDAQETTSVP 339          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: GSHR_DEBHA (Glutathione reductase OS=Debaryomyces hansenii GN=GLR1 PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.713e-18
Identity = 71/241 (29.46%), Postives = 115/241 (47.72%), Query Frame = 1
Query:    4 YARSYGWEV-HEKI---DFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPN-EVEVTQLDGTKLSY---------------SAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMR-AVVARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGV 654
            + +SYG     +K+   DFDW     K+   + RLNGIY+R L N GV    G       N +VEVT     +LS+               +    LIATG  A   P + G EL  TSD    L++ PK   V+G GYI VE + I++ +GS   L+ R +  LR FD+ ++ ++     +  G+N+  ++     ++  +G   K+   +G+ +  D +++  G+  +   + L  VGV
Sbjct:   72 HLKSYGLSTTDDKVKYGDFDWSTFKDKRDAYVKRLNGIYERNLKNEGVDYIYGFAHFANSNGDVEVTLTGDQELSFLEEGKEFKKDEKLVFAGSKTLIATGGYAINPPNVEGHELGTTSDGFFELQKQPKSVAVVGAGYIGVELSGIFKALGSETHLVIRGDTVLRSFDESIQNSITDYYTDKLGVNIIKQSGSVSKVEKIDGDRKKITLGNGQVLEVDELIWTMGR-KSLINIGLDKVGV 311          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_PHOLL (Soluble pyridine nucleotide transhydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=sthA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.238e-18
Identity = 62/193 (32.12%), Postives = 93/193 (48.19%), Query Frame = 1
Query:  100 GIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG--QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STG 672
            G Y+R     G +++ GE   +  + V V   D      SA  I+IATGSR    P           SD  L L+  P+  ++ G G I  E+ASI+RG+G  VDL+  +   L   D EM   ++ +    GI +       ++   ++GV V    G+++ AD +L+A G+  NT  L LK VG+E  S G
Sbjct:  102 GFYER----NGCRMFSGEATFIDDHRVSVRYADDNHDILSADKIIIATGSRPYCPPDVDFTHSRIYNSDSILKLDHEPRHVIIYGAGVIGCEYASIFRGLGVKVDLINTRNHLLAFLDQEMSDALSYHFWNSGIVIRHNEEYSKIEGVDDGVIVHLKSGKKVKADCLLYANGRTGNTDTLGLKNVGLEADSRG 290          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: TRXR2_DROME (Thioredoxin reductase 2, mitochondrial OS=Drosophila melanogaster GN=Trxr-2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.817e-18
Identity = 67/226 (29.65%), Postives = 113/226 (50.00%), Query Frame = 1
Query:    7 ARSYGWEVHE-KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTK-LSYSAKHILIATGSRAQRAPIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVI------TDHGEEIVADVVLFATGQAPNTKRLNLKAVGVE 657
            A +YGW V +  I  DW+KL++   + I  +N + +  L +  V+           + +E   + G +    +++++++A G R +   IPG  EL ITSD+  S E  P R +V+G GY+ +E A   +G+G    ++ R  + LRGFD +M  ++A  +  RGI     T  K + +  +G  ++      T      V D VL+A G+    + LNL A GV+
Sbjct:  103 AVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYVNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGITSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVR-SIVLRGFDRQMSELLAAMMTERGIPFLGTTIPKAVERQADGRLLVRYRNTTTQMDGSDVFDTVLWAIGRKGLIEDLNLDAAGVK 327          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_MARMS (Soluble pyridine nucleotide transhydrogenase OS=Marinomonas sp. (strain MWYL1) GN=sthA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.985e-18
Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1
Query:  133 VKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR-APIPGQELAI-TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVY 720
            + +Y G GK    N +EV   +       AK ++IATGSR  R A I      I  SD  LSL   P+  ++ G G I  E+ASI+ G+G  V+L+   +  L   DDE+   ++ +L   G+ +    T   +  +E GV +    G+++ AD +LF  G++ NT  L L+++ +EV S G          Q   VY
Sbjct:  109 IDIYFGRGKFKDANTIEVNTYEKGPELLEAKKVVIATGSRPYRPANIDFSHPRIYCSDTILSLSHTPRSLIIYGAGVIGCEYASIFCGLGVRVELINPAKKLLSFLDDEITDALSYHLRDGGVLIRHNETYDSVETTERGVVMHMASGKKLRADALLFCNGRSGNTDNLGLESINLEVNSRGQLAVNDTYQTQVENVY 306          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_PSEPW (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain W619) GN=sthA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.511e-18
Identity = 66/215 (30.70%), Postives = 102/215 (47.44%), Query Frame = 1
Query:  103 IYKRLLSNAG------VKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR-APIPGQELAI-TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYG 723
            I K++ S  G      V L+ G G       VEV   +G     +AKHI+IATGSR  R A I      +  SD  LSL   P++ +V G G I  E+ASI+ G+G  V+L+  +   L   D E+   ++ +     I +      + +   + GV +    G++I AD +L+  G+  NT +L L+ +G++V S G  E           +YG
Sbjct:   93 ISKQVASRTGYYARNRVDLFFGTGSFADEQTVEVVCPNGVVEKLNAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAGVIGCEYASIFSGLGVLVELVDNRGQLLSFLDSEISQALSYHFSNNNITVRHNEDYERVEGLDNGVILHLKSGKKIKADALLWCNGRTGNTDKLGLENIGIKVNSRGQIEVDEAYRTSVPNIYG 307          
BLAST of DY260008 vs. ExPASy Swiss-Prot
Match: STHA_PSEFS (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens (strain SBW25) GN=sthA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.511e-18
Identity = 66/215 (30.70%), Postives = 103/215 (47.91%), Query Frame = 1
Query:  103 IYKRLLSNAG------VKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR-APIPGQELAI-TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGQAPNTKRLNLKAVGVEV*STGTCEGGTKTPPQTSPVYG 723
            I K++ S  G      V L+ G G       VEV   +G      AKHI+IATGSR  R A I      I  SD  LSL   P++ ++ G G I  E+ASI+ G+G  V+L+  ++  L   D E+   ++ +     I +      + +   + GV +    G++I AD +L+  G+  NT +L ++ +GV+V S G  E         + +YG
Sbjct:   93 ISKQVASRTGYYARNRVDLFFGTGSFADEQTVEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHPRIYDSDTILSLGHTPRKLIIYGAGVIGCEYASIFSGLGVLVELVDNRDQLLSFLDSEISQALSYHFSNNNITVRHNEEYERVEGLDNGVILHLKSGKKIKADALLWCNGRTGNTDKLGMENIGVKVNSRGQIEVDENYRTCVTNIYG 307          
The following BLAST results are available for this feature:
BLAST of DY260008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
DLDH_THESC5.889e-1930.45Dihydrolipoyl dehydrogenase OS=Thermus scotoductus... [more]
STHA_YERE87.691e-1929.15Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
DLDH_MANSE7.691e-1931.69Dihydrolipoyl dehydrogenase OS=Manduca sexta PE=2 ... [more]
TRXR2_BOVIN1.312e-1828.35Thioredoxin reductase 2, mitochondrial OS=Bos taur... [more]
GSHR_DEBHA1.713e-1829.46Glutathione reductase OS=Debaryomyces hansenii GN=... [more]
STHA_PHOLL2.238e-1832.12Soluble pyridine nucleotide transhydrogenase OS=Ph... [more]
TRXR2_DROME3.817e-1829.65Thioredoxin reductase 2, mitochondrial OS=Drosophi... [more]
STHA_MARMS4.985e-1831.82Soluble pyridine nucleotide transhydrogenase OS=Ma... [more]
STHA_PSEPW6.511e-1830.70Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEFS6.511e-1830.70Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260008 ID=DY260008; Name=DY260008; organism=Citrus clementina; type=EST; length=923bp
GCTTATGCAAGGAGTTATGGATGGGAGGTACACGAGAAAATTGACTTCGA
CTGGAAAAAACTTCTGCAAAAGAAGACAGATGAGATACTCAGATTAAATG
GAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAATTATATGAAGGG
GAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGG
CACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGGAAGTA
GGGCTCAACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGAC
GAGGCATTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGG
AGGGTACATTGCTGTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTA
CTGTGGATCTATTATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGAT
GAAATGCGGGCAGTAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTT
GCACCCGAGGACTACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAA
AAGTTATTACAGATCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTT
GCCACTGGCCAGGCACCCAATACAAAAAGGTTGAATTTGAAAGCTGTTGG
TGTGGAAGTTTAATCAACAGGGACCTGTGAGGGTGGAACGAAAACTCCCC
CCCAAACGTCCCCAGTATATGGGCTGGTGGTGATGGAAACTAAACCAAGG
AATCCTACCCCCGGGCCCCTTGGAGGGAGGGAAAGTCCCTCTCCAAAAAC
TGTCTTTCGGGGGAACCCCCCCCCACAACCCAACCAACAACGACGGTCCC
CCGCGGCTCGACATCTACCACCCCCCCCCCCCCTCCGCCACGCGCCTCTC
CCACACGGCACATCCACACAACG
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