DY260009

Overview
NameDY260009
Unique NameDY260009
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length978
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260009 vs. ExPASy Swiss-Prot
Match: THI4_HALMA (Putative thiazole biosynthetic enzyme OS=Haloarcula marismortui GN=rrnAC1782 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.620e-17
Identity = 64/227 (28.19%), Postives = 105/227 (46.26%), Query Frame = 2
Query:  266 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDY----DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEPKGGVSSCGHDGPFGALK*KV*KYRKD*GIARMKGLEHEPRKKANGKATREGVPG 931
            +F  + E+ V+R + + +  + + ++D+D    G G +GL  A EL++   +Q+ ++E++   GGG WLGG L + + VR PA   LDEL +D+    D +  YV     A    + + K       K+ N     D++++   RVGG+V NW  V       +C+DP  +E    + + GHD           K   + G+    GLE E            G PG
Sbjct:    9 QFSDVGEAEVTRAIGQEWTEEFMDFSDSDVIIVGGGPSGLMAAKELAER-GVQVMVVEKNNYLGGGFWLGGFLMNKVTVRDPAQQVLDELEVDHKRSKDSEGLYVANGPEA---CSGLIKAACDAGAKMQNMTEFTDIVIREDHRVGGIVMNWTPVHALPREITCVDPIAVEADLVIDATGHDA-------MAVKKLDERGVLNAPGLEDEASGMDQTDDDTYGAPG 224          
BLAST of DY260009 vs. ExPASy Swiss-Prot
Match: THI4_METMJ (Putative thiazole biosynthetic enzyme OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_2251 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.881e-17
Identity = 66/228 (28.95%), Postives = 104/228 (45.61%), Query Frame = 2
Query:  278 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEPKGGVSSCGHDGPFGALK*KV*KYRKD*GIARMKGLEHEPRKKANGKA---TREGVPGKKIYG 946
            + E  +SR +       +I + + D    G G +GL+CA  L +   ++ A+IE+ +S GGG W GG +F  +VV++ A   LD  GI Y   ++ Y V K         ++       V+ FN    ED++++G GR+GG+V NW  V M       +DP  M     V + GHD     +        K  G   +KG      ++A  +    T+E  PG  + G
Sbjct:    3 LNEVTISRAILEEQHRALIDHLEMDAAVIGGGPSGLACAALLGEK-GVKCALIEKKLSIGGGMWGGGMMFPRIVVQEDARRLLDRFGIAYKAFEEGYYVAKSVEAVAK--LTAAACDAGVEFFNLTTVEDVMIRGDGRIGGLVVNWTPVDM---AGLHVDPLTMACTCTVDATGHDAMIARM------VEKKGGALTVKGESFMWAERAESQILAHTKEVFPGLFVTG 218          
BLAST of DY260009 vs. ExPASy Swiss-Prot
Match: THI4_NATPD (Putative thiazole biosynthetic enzyme OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=NP5174A PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.911e-16
Identity = 62/227 (27.31%), Postives = 107/227 (47.14%), Query Frame = 2
Query:  266 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD-EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEPKGGVSSCGHDGPFGALK*KV*KYRKD*GIARMKGLEHEPRKKANGKATRE---GVPG 931
            +F  + E+ V+R + + +  + + ++D+D    G G +GL  A ELS+   +Q  ++E++   GGG WLGG L + + VR PA   L++L +D+   QD+  +         + + K       K+ N     D++++   RVGG+V NW  V       +C+DP  +E    + + GHD         V K ++  G+    G+EH          T +   G PG
Sbjct:    6 QFSDVGEAEVTRAIGQEWTEEFMDFSDSDVIIVGGGPSGLMAAKELSER-GVQTMVVEKNNYLGGGFWLGGFLMNKVTVRDPAQNVLEDLDVDFKRSQDSEGLYVANGPEACSGLIKAACDAGAKMQNMTEFTDIVIREDHRVGGIVMNWTPVHALPREITCVDPIAVEADLVIDATGHDAV------AVSKLQER-GVLNAPGIEHADEHNTGMDQTGDDSYGAPG 224          
BLAST of DY260009 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.911e-16
Identity = 51/177 (28.81%), Postives = 89/177 (50.28%), Query Frame = 2
Query:  269 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEPKGGVSSCGHD 799
            F  + E+ V+  +   + + +  +  +D    GAG AGL+ A+ L++    ++ I+EQ+   GGG WLGG   + + +R PA   LDEL + Y+     +      L  + + ++ L     ++ N    +D+IV+  RV GVV NW+ V       +C+DP  +  +  V + GHD
Sbjct:    3 FARVNEADVTEAILDGFYSSLKKHLRSDVIVVGAGPAGLTAAWRLAE-AGARVLIVEQNNYLGGGLWLGGYFMNPVTIRAPAQRILDELEVPYEAVKPGLYRTKGPLLAAKLAARAL-EAGAEVLNLTMLDDVIVENSRVAGVVVNWSPVQGLPRQITCVDPVGLRAEYVVDATGHD 177          
BLAST of DY260009 vs. ExPASy Swiss-Prot
Match: THI4_METAC (Putative thiazole biosynthetic enzyme OS=Methanosarcina acetivorans GN=MA_2851 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.311e-15
Identity = 53/178 (29.78%), Postives = 92/178 (51.69%), Query Frame = 2
Query:  278 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA---RPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEPKGGVSSCGHD 799
            + E I++R +   Y    + Y D D    G G A L  A  L++   +++A+ EQ +S GGG W GG +F  +VV++ A   LD+ GI Y E ++   + ++       + KL+A       ++FN V+ ED++++   RV G+V NW  V+     +  +DP ++  K  +   GH+
Sbjct:    3 LDEVIITRAIFDEYSKTFLDYTDIDVALVGGGPANLVAAKYLAE-AGVKVALYEQKLSLGGGMWAGGMMFPRIVVQEEATRILDDFGIRYKEYESGYYVANSV----ESVGKLIAGATSAGAEVFNLVSFEDIMIRENDRVTGIVINWGPVTTQ---RLHVDPLMIRTKLVIDGTGHE 172          
BLAST of DY260009 vs. ExPASy Swiss-Prot
Match: THI4_METMA (Putative thiazole biosynthetic enzyme OS=Methanosarcina mazei GN=MM_0222 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.324e-15
Identity = 55/178 (30.90%), Postives = 90/178 (50.56%), Query Frame = 2
Query:  278 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA---RPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEPKGGVSSCGHD 799
            + E I++R +   Y    + Y D D    G G A L  A  L++    ++AI EQ +S GGG W GG +F  +VV++ A   LD+ GI Y E +    + ++       + KL+A       ++FN V+ ED++++   RV G+V NW  V+     +  +DP ++  K  +   GHD
Sbjct:    3 LDEVIITRAIFEEYSKTFLEYTDIDVALVGGGPANLVAAKYLAE-AGAKVAIYEQKLSLGGGMWAGGMMFPRIVVQEEACRVLDDFGIRYKEYEPGYFVANSV----ESVGKLIAGATSAGAEVFNLVSFEDIMIRENDRVTGIVINWGPVTTQ---RLHVDPLMIRTKLVIDGTGHD 172          
BLAST of DY260009 vs. ExPASy Swiss-Prot
Match: THI4_DESOH (Putative thiazole biosynthetic enzyme OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=Dole_2426 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.648e-15
Identity = 54/175 (30.86%), Postives = 88/175 (50.29%), Query Frame = 2
Query:  278 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD--EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEPKGGVSSCGH 796
            + E  +SR +  R+   +I   + D    G G +GL  A+ L++    ++A+ E+ +S GGG W G  LF+ +VV+K A   LD + I Y    +D Y      A+ T T  +   A+  V +FN V  ED++++  R+ G+V NW+ V M       +DP  M     + + GH
Sbjct:    3 LNEVTISRAIIDRFYEKLIANLEVDVAVVGGGPSGLVAAWRLARAGR-KVALFERKLSIGGGMWGGAMLFNEIVVQKSALHVLDAMEIGYRLYAEDYYTADAVEAISTLTSQA---AKAGVAIFNCVTVEDVMIRPDRIVGLVLNWSPVEM---AGLHVDPLAMRASFVIDATGH 170          
BLAST of DY260009 vs. ExPASy Swiss-Prot
Match: THI4_METBF (Putative thiazole biosynthetic enzyme OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A2100 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.633e-15
Identity = 55/176 (31.25%), Postives = 87/176 (49.43%), Query Frame = 2
Query:  278 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEPKGGVSSCGHD 799
            + E I++R +   Y    + Y + D    G G A L  A  L++    ++AI EQ +S GGG W GG +F  +VV++ A   LD+ GI Y E Q  Y V          I     A    ++FN V+ ED++++   RV G+V NW  V++    +  +DP ++  K  +   GH+
Sbjct:    3 LDEVIITRAIFDEYSKTFLDYTEVDVALIGGGPANLVAARYLAE-AGAKVAIYEQKLSLGGGMWAGGMMFPRIVVQEEACRILDDFGIRYKEYQPGYYVANSVESVGKLISGATSA--GAEVFNLVSFEDVMIRENDRVTGIVVNWGPVTVQ---RLHVDPLMIRTKLVIDGTGHE 172          
BLAST of DY260009 vs. ExPASy Swiss-Prot
Match: THI4_ARCFU (Putative thiazole biosynthetic enzyme OS=Archaeoglobus fulgidus GN=AF_0702 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.258e-14
Identity = 54/183 (29.51%), Postives = 94/183 (51.37%), Query Frame = 2
Query:  266 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLAR---PNVKLFNAVAAEDLIVKGGRVG--GVVTNWALVSMNHDTQSCMDPNVMEPKGGVSSCGHD 799
            KF  + E+ +++ +      + + YA++D    GAG +GL+ A  L++   ++  ++E+ +S GGG   GG LF  +VV + A   LD+ GI Y E  N++V   A       M+KL A+      K+ + V+ ED+I +   +G  GV   W+ V +   +   +DP  +  +  V + GHD
Sbjct:    4 KFTEVMEAEITKAIVETASEEWVEYAESDVIVVGAGPSGLTAARYLAEK-GLKTLVLERRLSFGGGIGGGGMLFHKVVVEREAKDILDDFGIRYTEHRNFLVADSA-----EFMAKLAAKAIDAGAKIIHGVSVEDVIFRDDPLGVRGVCIQWSAVEI---SGLHVDPLFLRSRAVVDATGHD 177          
BLAST of DY260009 vs. ExPASy Swiss-Prot
Match: THI4_SULAC (Putative thiazole biosynthetic enzyme OS=Sulfolobus acidocaldarius GN=Saci_0854 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.146e-14
Identity = 53/183 (28.96%), Postives = 90/183 (49.18%), Query Frame = 2
Query:  257 NTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEPKGGVSSCGHD 799
            ++ K   I E  +SR + ++ M D + + + D    GAG AG+S AY L+K+  ++  + E+ +S GGG   G  LF  +V+  PA   L E+ I  ++ ++ V I  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  +  K  V + GHD
Sbjct:    3 DSIKIKAIDEVKISRYIIKQTMEDWMNFVENDVVIVGAGPAGMSAAYYLAKH-GLKTLVFERRLSFGGGIGGGAMLFHKLVIESPADEVLKEMNIRLEKVEDGVYIVDSAEFMAKLAASAI-DAGAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---AGLHVDPVFISAKAVVDATGHD 180          
The following BLAST results are available for this feature:
BLAST of DY260009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
THI4_HALMA4.620e-1728.19Putative thiazole biosynthetic enzyme OS=Haloarcul... [more]
THI4_METMJ7.881e-1728.95Putative thiazole biosynthetic enzyme OS=Methanocu... [more]
THI4_NATPD3.911e-1627.31Putative thiazole biosynthetic enzyme OS=Natronomo... [more]
THI4_AERPE3.911e-1628.81Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_METAC3.311e-1529.78Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_METMA4.324e-1530.90Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_DESOH5.648e-1530.86Putative thiazole biosynthetic enzyme OS=Desulfoco... [more]
THI4_METBF9.633e-1531.25Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_ARCFU1.258e-1429.51Putative thiazole biosynthetic enzyme OS=Archaeogl... [more]
THI4_SULAC2.146e-1428.96Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260009 ID=DY260009; Name=DY260009; organism=Citrus clementina; type=EST; length=978bp
CACTGCTGCAAATCTAATTACTTCTCATTATCAAACTTCTAAGCAGCAGG
GGAAGGAGGGGTTAAAAAAAAAAAACATGGCAGCCATGACTTCTACAGCT
TTCGCTCCTTCAGTTTCGTCCACCACCAATAAGCTCTTTGACTCATCCTT
TCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCATCAAAT
CTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCTTAT
GACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTCTCG
TGAAATGACACGCAGGTACATGACGGACATGATCACTTATGCTGACACTG
ATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTATGAG
CTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCTGTTAG
CCCCGGCGGTGGCGCGTGGCTCGGTGGACAGCTCTTCTCTGCCATGGTTG
TGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACTACGAT
GAGCAAGACAACTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCCAC
TATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCTCTTTAATGCAG
TGGCAGCCGAGGATTTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGGTG
ACCAACTGGGCGTTGGTGTCAATGAATCACGATACACAGTCCTGCATGGA
TCCCAATGTAATGGAACCCAAGGGTGGTGTGAGCTCTTGTGGCCATGATG
GCCCTTTTGGGGCCCTGAAGTAAAAAGTTTGAAAATATCGGAAAGATTGA
GGAATTGCCCGAATGAAAGGCCTGGAACATGAACCCCGCAAAAAAGCCAA
TGGAAAGGCGACCCGGGAAGGTGTCCCCGGTAAGAAAATTTACGGGCCGG
AAAATTCCCAAAATTGGTGGGCCCCCCC
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