DY260020

Overview
NameDY260020
Unique NameDY260020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1058
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.148e-43
Identity = 89/196 (45.41%), Postives = 113/196 (57.65%), Query Frame = 3
Query:  162 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNIIH 749
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG +G++T R +EIAAFF  T HETTGG   A    +  GYCF+ +                +YYGRGPIQLT   NY +                  ATD  +SF++AIWFWMT Q  KPS H+V+   W PSA D    R+PGY    NII+
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-----------RYYGRGPIQLTNRNNYEKA--GTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIIN 207          

HSP 2 Score: 27.7202 bits (60), Expect = 3.148e-43
Identity = 13/27 (48.15%), Postives = 16/27 (59.26%), Query Frame = 1
Query:  751 GGIECGPRWNDPVPNRIGSLTTFRGQV 831
            GGIECG   ND V +RIG    + G +
Sbjct:  208 GGIECGIGRNDAVEDRIGYYRRYCGML 234          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 7.545e-42
Identity = 89/196 (45.41%), Postives = 112/196 (57.14%), Query Frame = 3
Query:  162 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNIIH 749
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG SG++T R +EIAAFF  T HETTGG   A    +  GYCF+ +                +YYGRGPIQLT   NY +                  ATD  +SF++AIWFWMT Q  KPS H+V+   W PSA D +  R PG     NII+
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-----------RYYGRGPIQLTNQNNYEKA--GNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIIN 207          

HSP 2 Score: 24.6386 bits (52), Expect = 7.545e-42
Identity = 12/27 (44.44%), Postives = 15/27 (55.56%), Query Frame = 1
Query:  751 GGIECGPRWNDPVPNRIGSLTTFRGQV 831
            GGIECG   N  V +RIG    + G +
Sbjct:  208 GGIECGVGPNAAVEDRIGYYRRYCGML 234          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.653e-39
Identity = 90/223 (40.36%), Postives = 123/223 (55.16%), Query Frame = 3
Query:   93 ARNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQ-PPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNII 746
            +R+ G   V     T  G     +  +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   R RE+AAF A T H T+       GG Y+WGYC+       S  C  N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++F++A+W WMTA+ P +PS H V+T +W P+  D   GR PGY  T NI+
Sbjct:   74 SRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNIL 287          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.653e-39
Identity = 90/223 (40.36%), Postives = 123/223 (55.16%), Query Frame = 3
Query:   93 ARNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQ-PPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNII 746
            +R+ G   V     T  G     +  +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   R RE+AAF A T H T+       GG Y+WGYC+       S  C  N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++F++A+W WMTA+ P +PS H V+T +W P+  D   GR PGY  T NI+
Sbjct:   74 SRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNIL 287          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.899e-37
Identity = 82/195 (42.05%), Postives = 105/195 (53.85%), Query Frame = 3
Query:  162 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNII 746
            +  +IS  +FE +L +R        GFYTYDAFI AAK+FPAF  +G+  +R RE+AAF A T HETTGGW  AP G Y  G                       Y+GRGPIQ+++NYNY                     +D  + F++A+WFWMT Q PKPS H+V+T  W PS+ D   GR+PGY    NII
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG-------------------STSDYFGRGPIQISYNYNY--GAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNII 166          

HSP 2 Score: 22.7126 bits (47), Expect = 3.899e-37
Identity = 9/18 (50.00%), Postives = 11/18 (61.11%), Query Frame = 1
Query:  751 GGIECGPRWNDPVPNRIG 804
            GG+ECG      V +RIG
Sbjct:  168 GGVECGKGQESHVADRIG 185          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 3.576e-26
Identity = 72/210 (34.29%), Postives = 111/210 (52.86%), Query Frame = 3
Query:  135 TGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEIS-PPSPHC-NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNIIHR 752
            +G+ T       +++  +F+ +  +R D  CP++GFY+Y +F+ AA++FPAFG  G+   R RE+AAF A     T+G   D     +AWG C I+  +   +  C + ++PC    KY  RGPIQLT N+NY                      DP++SF++A+WFWM+    KPSCH+++ +    +AN     R+P      NII R
Sbjct:  121 SGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVLNA-NSAAN-----RIPNKGVIGNIISR 319          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 8.244e-23
Identity = 67/181 (37.02%), Postives = 93/181 (51.38%), Query Frame = 3
Query:  102 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPH----CNLNYPC-RGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFW 626
            CG+G   G  D    T+   +  I++ E F  L+   +D  C A+GFYT DAF+ AA  +P+FG +G+     REIAAFFA   HET               +C+I EI  PS +     +  +PC  GK YYGRGP+Q++WN+NY                    A  PVL+FQ+A+W+W
Sbjct:   49 CGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVAQADD-GCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYW 212          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.399e-22
Identity = 64/186 (34.41%), Postives = 89/186 (47.85%), Query Frame = 3
Query:   87 GPARNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHC---NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWM 629
            GP R+ G G   G    G G+ G  +  +++   F  +        C  + FYT  AF+ A  A+P F + G E    REIAAFFA   HET               +C+ISEI+  + +C   N  +PC    KYYGRGP+Q++WNYNY                    A D V++F++A+WFWM
Sbjct:   56 GPCRSGGGGGG-GGGGGGGGSGGANVANVVTDAFFNGIKNQAGS-GCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.463e-21
Identity = 60/188 (31.91%), Postives = 88/188 (46.81%), Query Frame = 3
Query:  102 CGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHCN---LNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTA 635
            CG G   G   +G G  G       +  +++   F  +        C  + FYT  AF+ A K +P F + G++    REIAAFFA   HET               +C+ISEI+  + +C+     +PC    KYYGRGP+Q++WNYNY                    A D V++F++A+WFWM +
Sbjct:   44 CGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGIKNQAGS-GCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.932e-20
Identity = 67/191 (35.08%), Postives = 94/191 (49.21%), Query Frame = 3
Query:  102 CGSGVVCGERDTGHGTD----GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PHCNLN---YPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPP 644
            CG+G   G   +  GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    +  REIA  FA   HET               +C+I EI+  S  +C+ N   YPC  GK Y+GRGPIQL+WNYNY  C                 +++P ++F++ +WFWM +  P
Sbjct:   48 CGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGG-GCAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC--GQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP 218          
The following BLAST results are available for this feature:
BLAST of DY260020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIQ_TOBAC3.148e-4345.41Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIP_TOBAC7.545e-4245.41Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI7_ORYSJ1.653e-3940.36Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.653e-3940.36Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA3.899e-3742.05Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI3.576e-2634.29Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ8.244e-2337.02Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE2.399e-2234.41Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIB_MAIZE3.463e-2131.91Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_BRANA2.932e-2035.08Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YP18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260020 ID=DY260020; Name=DY260020; organism=Citrus clementina; type=EST; length=1058bp
ATTGATATCCTACATCTGTTGCTTTCCAAATGAGGCTTATTGCCTCCTTA
CTAGTTTTCTCCCCAGTTTTATCTTTCCTACTAGGAGGCCCCGCCCGGAA
TTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCCACGGGACGG
ATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTG
CTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACACTTA
TGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTG
GAAATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTTGCCCCAACT
GGCCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGGAGAATATGC
TTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCCACTGTA
ATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAA
CTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCTAGG
AGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTAT
CATTCCAGTCAGCCATCTGGTTCTGGATGACCGCACAGCCCCCAAAGCCA
TCCTGCCACGAAGTCCTTACCGACGAATGGAAACCATCAGCCAATGACCT
AAACCCCGGCCGGCTTCCGGGATACCGTCCAACCCACAATATAATCCACC
GGTGGAATTGAATGTGGCCCAAGGTGGAATGACCCTGTACCTAACCGTAT
TGGGTCCTTAACCACTTTCCGGGGGCAAGTTTGGGATTCACCCCGGTTAC
CACCTGAATTGCACCCCCCACCCCCCCTTCGCCCCTATTCCAGGGCCCCA
ACCCATGTGACCCCCCCCCGACCAACCCTTTAATCAAACTACACCCTAAT
AAAAACCCCCCCCTAAAAAAACCTTTCCCTCCTCCCCCCGCGCCGGCGCA
CCCACCCAATTCGTCCCCCCCCTCTTTTGCAAACACACTAAAAAACACCC
GCGGCCCC
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