DY260056

Overview
NameDY260056
Unique NameDY260056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length931
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_YERPY (Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=apt PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.077e-44
Identity = 87/174 (50.00%), Postives = 123/174 (70.69%), Query Frame = 3 
Query:   63 ASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK 584
            ASA   AQ  ++  I  +I+ IPD+PK GI+F+D+T+LL + KA+  +I+L  E Y +  ++ V G EARGF+FG P+ALA+G  FVP+RKP KLP E ISE Y LEYG D +E+H  ++Q G++ L+VDDL+ATGGT+ A ++L+ R+G  VV  A +I LPEL G  RL ++
Sbjct:    3 ASASKTAQ--QLKYIKDSIKTIPDYPKAGILFRDVTSLLENPKAYSASIELLSEHYSESGVTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVVHAAFIINLPELGGEARLTQQ 174
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_YERPB (Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=apt PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.077e-44
Identity = 87/174 (50.00%), Postives = 123/174 (70.69%), Query Frame = 3 
Query:   63 ASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK 584
            ASA   AQ  ++  I  +I+ IPD+PK GI+F+D+T+LL + KA+  +I+L  E Y +  ++ V G EARGF+FG P+ALA+G  FVP+RKP KLP E ISE Y LEYG D +E+H  ++Q G++ L+VDDL+ATGGT+ A ++L+ R+G  VV  A +I LPEL G  RL ++
Sbjct:    3 ASASKTAQ--QLKYIKDSIKTIPDYPKAGILFRDVTSLLENPKAYSASIELLSEHYSESGVTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVVHAAFIINLPELGGEARLTQQ 174
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_YERP3 (Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=apt PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.077e-44
Identity = 87/174 (50.00%), Postives = 123/174 (70.69%), Query Frame = 3 
Query:   63 ASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK 584
            ASA   AQ  ++  I  +I+ IPD+PK GI+F+D+T+LL + KA+  +I+L  E Y +  ++ V G EARGF+FG P+ALA+G  FVP+RKP KLP E ISE Y LEYG D +E+H  ++Q G++ L+VDDL+ATGGT+ A ++L+ R+G  VV  A +I LPEL G  RL ++
Sbjct:    3 ASASKTAQ--QLKYIKDSIKTIPDYPKAGILFRDVTSLLENPKAYSASIELLSEHYSESGVTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVVHAAFIINLPELGGEARLTQQ 174
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_SHEPA (Adenine phosphoribosyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=apt PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.077e-44
Identity = 85/160 (53.12%), Postives = 120/160 (75.00%), Query Frame = 3 
Query:   96 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            +A I ++I+ IP++PK GI+F+D+T+LL D +A++ TI L VE YKD+  + V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG DV+E+HV A+ A ++ L++DDL+ATGGT+ A ++L+ ++G  V + A VI LP+L G ERL
Sbjct:    8 LALIKNSIKTIPNYPKEGILFRDVTSLLEDPQAYKLTIGLLVEHYKDQGFTKVVGTEARGFLFGAPLALELGIGFVPVRKPGKLPRETISESYELEYGHDVLEIHVDAINADDKVLVIDDLLATGGTIEATVKLIRKLGGSVNDAAFVISLPDLGGEERL 167
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_CLONN (Adenine phosphoribosyltransferase OS=Clostridium novyi (strain NT) GN=apt PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.077e-44
Identity = 88/166 (53.01%), Postives = 119/166 (71.69%), Query Frame = 3 
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 602
            +   IRVI  FPK GI F+DITT+L D +A + T+D  VE  KDKN+ VV G EARGF+FG P+A A+GA FVP+RK  KLP E IS EY LEYG DV+++H  A++ G++  IVDDL+ATGGT+++ I ++E++G  VV    +IEL +LKGRE++G   +  LV
Sbjct:    3 LKEKIRVIEGFPKEGISFKDITTVLNDKEALKYTVDAIVEHLKDKNVDVVVGPEARGFLFGTPVAYALGAAFVPVRKKGKLPCETISSEYDLEYGSDVLQIHKDAIKKGQKVAIVDDLLATGGTMNSVIEMIEKLGGEVVSVDFLIELTDLKGREKIGNYDIMSLV 168
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_SHIFL (Adenine phosphoribosyltransferase OS=Shigella flexneri GN=apt PE=3 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.837e-44
Identity = 84/157 (53.50%), Postives = 118/157 (75.16%), Query Frame = 3 
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G +RL
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISENYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_SHIF8 (Adenine phosphoribosyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=apt PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.837e-44
Identity = 84/157 (53.50%), Postives = 118/157 (75.16%), Query Frame = 3 
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G +RL
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISENYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_SHISS (Adenine phosphoribosyltransferase OS=Shigella sonnei (strain Ss046) GN=apt PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 84/157 (53.50%), Postives = 118/157 (75.16%), Query Frame = 3 
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G +RL
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_SHIDS (Adenine phosphoribosyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=apt PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 84/157 (53.50%), Postives = 118/157 (75.16%), Query Frame = 3 
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G +RL
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_SHIBS (Adenine phosphoribosyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=apt PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 84/157 (53.50%), Postives = 118/157 (75.16%), Query Frame = 3 
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G +RL
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167
The following BLAST results are available for this feature:
BLAST of DY260056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_YERPY1.077e-4450.00Adenine phosphoribosyltransferase OS=Yersinia pseu... [more]
APT_YERPB1.077e-4450.00Adenine phosphoribosyltransferase OS=Yersinia pseu... [more]
APT_YERP31.077e-4450.00Adenine phosphoribosyltransferase OS=Yersinia pseu... [more]
APT_SHEPA1.077e-4453.13Adenine phosphoribosyltransferase OS=Shewanella pe... [more]
APT_CLONN1.077e-4453.01Adenine phosphoribosyltransferase OS=Clostridium n... [more]
APT_SHIFL1.837e-4453.50Adenine phosphoribosyltransferase OS=Shigella flex... [more]
APT_SHIF81.837e-4453.50Adenine phosphoribosyltransferase OS=Shigella flex... [more]
APT_SHISS2.399e-4453.50Adenine phosphoribosyltransferase OS=Shigella sonn... [more]
APT_SHIDS2.399e-4453.50Adenine phosphoribosyltransferase OS=Shigella dyse... [more]
APT_SHIBS2.399e-4453.50Adenine phosphoribosyltransferase OS=Shigella boyd... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260056 ID=DY260056; Name=DY260056; organism=Citrus clementina; type=EST; length=931bp
CTCACTGACTATTTTCGGCGTTTTGAGTAGTGAGTGGTGACTCCACCCCA
CCTCAACAAATGGCTTCAGCTGACGTAAAAGCACAAGACCCTCGAATCGC
TGGGATTTCCTCAGCAATTCGTGTCATCCCAGACTTCCCTAAACCAGGGA
TTATGTTTCAAGATATCACAACATTGCTTCTTGATACCAAGGCTTTTAGA
GATACTATTGATCTGTTCGTTGAGAGGTACAAGGACAAAAACATCTCTGT
TGTTGCAGGTATTGAAGCTAGGGGTTTTATATTTGGGCCTCCTATTGCAT
TGGCTATTGGGGCAAAGTTTGTTCCTATGAGGAAACCTAAGAAGCTTCCT
GGGGAGGTTATTTCCGAAGAGTATTCCTTGGAATATGGAAAAGATGTAAT
GGAGATGCATGTAGGTGCTGTACAAGCAGGGGAGCGTGCTTTAATAGTAG
ACGATCTAGTTGCAACTGGTGGGACCTTGTCTGCTGCAATCAGGCTACTT
GAGCGAGTTGGGGTGCATGTGGTTGAGTGTGCATGCGTGATTGAACTGCC
AGAGCTAAAGGGTCGGGAACGGCTGGGAGAGAAACCACTATTTGTTCTTG
TAAGCTAAACTTGACCTCCGGTTATGGTTTAAATGCAATGTTTGTGGACC
ATATGGGTTTCTAGTCGCTCGGGCCTCGCCCCAAGCCTTGAGAACCTTCT
AAAACCATCCGGTAATATAAAAGCAATTTCATTGGCTTTCTATTTTATTT
AACACCTTGGGGAAAGAGTGGTGGGGAAGCCGGGTTCCGTCCGCTATTGT
TGGGTTAAAAAATGAAAGGCCTATGAAAAAATTCCCTCCTCCCCTAAACC
CCCGTATTTGAAGCCTTTTCCAATTACCCGGAAATTCCAACCCAAGGGTT
TGTTGAAGGTTCCCTGGGGTGAATTTAAACC
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