DY260125

Overview
NameDY260125
Unique NameDY260125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1125
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_CLOBL (50S ribosomal protein L19 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.075e-11
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  355 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKL 648
            +AIEA +    +P+   GD V++  ++ E  R R+ +++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLRD++
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRV 104          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_CLOBK (50S ribosomal protein L19 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.075e-11
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  355 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKL 648
            +AIEA +    +P+   GD V++  ++ E  R R+ +++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLRD++
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRV 104          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_CLOBJ (50S ribosomal protein L19 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.075e-11
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  355 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKL 648
            +AIEA +    +P+   GD V++  ++ E  R R+ +++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLRD++
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRV 104          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_CLOBH (50S ribosomal protein L19 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.075e-11
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  355 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKL 648
            +AIEA +    +P+   GD V++  ++ E  R R+ +++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLRD++
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRV 104          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_CLOB6 (50S ribosomal protein L19 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.075e-11
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  355 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKL 648
            +AIEA +    +P+   GD V++  ++ E  R R+ +++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLRD++
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRV 104          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_CLOB1 (50S ribosomal protein L19 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.075e-11
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  355 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKL 648
            +AIEA +    +P+   GD V++  ++ E  R R+ +++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLRD++
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRV 104          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_THISH (50S ribosomal protein L19 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.710e-11
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  361 IEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRD 642
            +EA +  R +PD   GD V ++++V E NR RL  ++G+V++++N                 VE VF  YSP + EI+V     VRRA+LYYLRD
Sbjct:    8 LEAEQMNREVPDFTPGDTVVVQVKVKEGNRERLQAFEGVVIAKRNRGLNSAFTVRKISHGEGVERVFQTYSPAVAEIQVKRRGSVRRAKLYYLRD 102          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_RHIEC (50S ribosomal protein L19 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.710e-11
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  373 ESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 645
            E++R +P+   GD V + ++V E NR R+  Y+G+ ++R                   VE VFP+YSP I+ + VV   KVRRA+LYYLRD+
Sbjct:   16 EAKRTLPEFSPGDTVRVNVKVTEGNRTRVQAYEGVCIARSGGGLQENFTVRKISYGEGVERVFPVYSPMIESVDVVRRGKVRRAKLYYLRDR 107          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_PARDP (50S ribosomal protein L19 OS=Paracoccus denitrificans (strain Pd 1222) GN=rplS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.710e-11
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  382 RPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 645
            + IPD + GD V +  +V E  R R+ +Y+G+V+SR+                  VE VFPLYS NI  I VV   +VRRA+LYYLRD+
Sbjct:   17 KDIPDFKAGDTVRVGYKVTEGTRTRVQMYEGVVISRKGGGIGASFTVRKISFGEGVERVFPLYSTNIDSITVVRRGRVRRAKLYYLRDR 105          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_HELMI (50S ribosomal protein L19 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.710e-11
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 1
Query:  355 RAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRD 642
            R IEA +  + IPD + GD V++ ++V E NR R+ +++GIV+ R+                  VE  F ++SP + +I+VV   +VRRA+LYYLRD
Sbjct:    6 RQIEAEQLRKDIPDFKPGDTVKVHVKVVEGNRERIQLFEGIVIKRRGGGLSETFTVRRVSYGVAVERTFLVHSPRLDKIEVVRRGRVRRAKLYYLRD 102          
The following BLAST results are available for this feature:
BLAST of DY260125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RL19_CLOBL2.075e-1137.3750S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_CLOBK2.075e-1137.3750S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_CLOBJ2.075e-1137.3750S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_CLOBH2.075e-1137.3750S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_CLOB62.075e-1137.3750S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_CLOB12.075e-1137.3750S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_THISH2.710e-1138.9550S ribosomal protein L19 OS=Thioalkalivibrio sp. ... [more]
RL19_RHIEC2.710e-1139.1350S ribosomal protein L19 OS=Rhizobium etli (strai... [more]
RL19_PARDP2.710e-1142.7050S ribosomal protein L19 OS=Paracoccus denitrific... [more]
RL19_HELMI2.710e-1138.1450S ribosomal protein L19 OS=Heliobacterium modest... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YG09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260125 ID=DY260125; Name=DY260125; organism=Citrus clementina; type=EST; length=1125bp
CAAGAAGTTCCACTCTTTTGCATTCCTTCAAAGAGGCTAGGGTTTTCAAC
AGTTCTTTCTCGCGGCCCCTTTGTGAGCCATGGGGTTTCAGTTTCAACGA
AGCCTATAGGGTGGAATTTGGGCTTTTTCGTAAATGCCCAAGTGAAAGAT
AGTTTTGTGGTTAGGGCGGAGTCAAACGAAGAAGCGGAAGCGAATGAGAG
TATTGAAGAGGAGCAAAACGAGGCCGTTCAAGCACAAGGTGATGTTGTGG
TAGCTGTAGAAGCTGAATCTGAGGATAAGGTTGAAGAAGAAGAAGTGAAA
GCACCCAGAAAGCCCAGGGTTAAACTTGGAGATATCATGGGGATATTGAA
TAAGAGGGCGATTGAGGCATCGGAGAGTGAAAGACCAATTCCAGATATTA
GGACGGGTGATGTTGTGGAGATTAAATTGGAAGTTCCTGAAAATAGGCGT
AGGTTGTCCATTTACAAAGGTATTGTTATGTCAAGGCAAAATGCTGGGAT
CCACACTACAATTCGAATTCGGAGGATTATTGCTGGCATAGGGGTTGAGA
TCGTATTCCCTCTTTATTCGCCAAACATCAAGGAGATAAAAGTTGTCTCC
CACAGGAAAGTGAGGAGGGCAAGGCTGTACTATCTTAGAGACAAGCTTCC
TAGACTCTCCACTTTCCAATGAAGAAGCCCGATGCTGCTGGTCTTCAGTT
GATTTTGCCTTCAAAGTGGTTTTCAGAATCCTAAAATGTTGTAAAAGCTG
TAATTTAATATTCCATTTTATCATTTTTCCCTTCCTTTCCTTTCCTTTTA
ATTTAGCCGGGGAAATTAATGGAACCTTAGATGAATACATGAACCTTTAC
CAGCTTCCAATTTACATTCCAAAAAAAAAAAAAAAAAAAAACCCCACTTT
TCTTGTAAAAAGTTGGCCATTAAAAAAAAGCACTTGGTTATCAATTTGGT
TGGCCACAAAAAGGGTCCCCATCACGTTAAAAAAAAAACCCTTATTTTCC
CCCTCCCCCCCGAAATCCCCCCCCAAAAGGAGTTCCATAATACCAGGGGC
CCAAACCGGTTTTCCCGGGCACCCCCCCGGCCCCCCGGGCCCCCCAAAAT
TCTCCTGAAGTGTTTTACCTTGTCC
back to top