DY260133

Overview
NameDY260133
Unique NameDY260133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1426 contig Ccv1_Contig1426:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260133 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.351e-19
Identity = 53/161 (32.92%), Postives = 86/161 (53.42%), Query Frame = 1
Query:    1 LVDDPFTYCVVAVESVGRQVPIAFLERVNYDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIE-KVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMXXXXXXXXXXXXXXXXXXXSVCGGF 480
            LV D  TY  +A E  GR++P  FL+ V   F   YG  K  TA+A G+N +F   L+  M +   +   +  +++  A++ EVK +++ +I  ++L RGEKIE+LV+RT+ L  Q+  F++Q  Q++  MW++N+                   S C GF
Sbjct:   55 LVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMYGD-KGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKNVKLMLVLGAIVLIIIFIIVMSYCDGF 213          
BLAST of DY260133 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 44/131 (33.59%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   10 DPFTYCVVAVESVGRQVPIAFLERVNYDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQN 402
            D  T   +A E  GR++P +FLE ++  F + YG     +A A  +N EF   L + ++Y  + P     ++++K ++++V+ VM++NI+ +LDRGE++ELLVD+T N++     FR+Q  +    +W++N
Sbjct:   59 DGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRN 187          
BLAST of DY260133 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.022e-14
Identity = 45/132 (34.09%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    7 DDPFTYCVVAVESVGRQVPIAFLERVNYDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQN 402
            ++   +  +  E +G Q+P  FL  +   F + YG   +  +        F   L+E M+Y   +P+  +K+  V  QVSE KG + D IEK + RGEKIE++VD+TE L+S++  F+     ++RK+W+QN
Sbjct:   59 ENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNS-PTATYDPFIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQN 187          
BLAST of DY260133 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.277e-14
Identity = 46/160 (28.75%), Postives = 77/160 (48.12%), Query Frame = 1
Query:    1 LVDDPFTYCVVAVESVGRQVPIAFLERVNYDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMXXXXXXXXXXXXXXXXXXXSVCGGF 480
            +  D   Y  +  +   R    +FL  V   F   YG  +A TA+   +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+D+TENL   +  F+     + R M  +N+                    +CGGF
Sbjct:   55 ICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIKLTIIIIIVSIVFIYIIVSLLCGGF 212          
BLAST of DY260133 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 45/160 (28.12%), Postives = 76/160 (47.50%), Query Frame = 1
Query:    1 LVDDPFTYCVVAVESVGRQVPIAFLERVNYDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMXXXXXXXXXXXXXXXXXXXSVCGGF 480
            +  D   Y  +  +   R     FL  V   F   YG  +A TA+   +N EF   L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+D+TENL   +  F+     + R M  +N+                    +CGGF
Sbjct:   55 ICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNVKLTAIIVVVSIVFIYIIVSPLCGGF 212          
BLAST of DY260133 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 45/160 (28.12%), Postives = 76/160 (47.50%), Query Frame = 1
Query:    1 LVDDPFTYCVVAVESVGRQVPIAFLERVNYDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMXXXXXXXXXXXXXXXXXXXSVCGGF 480
            +  D   Y  +  +   R     FL  +   F   YG  +A TA+   +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+D+TENL   +  F+     + R M  +N+                    +CGGF
Sbjct:   55 ICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSIVFIYIIVSPLCGGF 212          
BLAST of DY260133 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 45/160 (28.12%), Postives = 76/160 (47.50%), Query Frame = 1
Query:    1 LVDDPFTYCVVAVESVGRQVPIAFLERVNYDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMXXXXXXXXXXXXXXXXXXXSVCGGF 480
            +  D   Y  +  +   R     FL  +   F   YG  +A TA+   +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+D+TENL   +  F+     + R M  +N+                    +CGGF
Sbjct:   55 ICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSIVFIYIIVSPLCGGF 212          
BLAST of DY260133 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 48/161 (29.81%), Postives = 74/161 (45.96%), Query Frame = 1
Query:    1 LVDDPFTYCVVAVESVGRQVPIAFLERVNYDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEE--ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMXXXXXXXXXXXXXXXXXXXSVCGG 477
            +  D   Y  +  +   R     FL  +   F   YG  +A TA+   +N EF   L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+D+TENL   +  F+     + R M  +N+                   + CGG
Sbjct:   55 ICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSIVIIYIIVSAACGG 211          
BLAST of DY260133 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 45/160 (28.12%), Postives = 76/160 (47.50%), Query Frame = 1
Query:    1 LVDDPFTYCVVAVESVGRQVPIAFLERVNYDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMXXXXXXXXXXXXXXXXXXXSVCGGF 480
            +  D   Y  +  +   R     FL  +   F   YG  +A TA+   +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+D+TENL   +  F+     + R M  +N+                    +CGGF
Sbjct:   55 ICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIISVVFIYIIVSPLCGGF 212          
The following BLAST results are available for this feature:
BLAST of DY260133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VAM7B_DICDI2.351e-1932.92Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VA712_ARATH4.434e-1833.59Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAM7A_DICDI1.022e-1434.09Vesicle-associated membrane protein 7A OS=Dictyost... [more]
VAMP7_MOUSE2.277e-1428.75Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_RAT3.884e-1428.13Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_PONAB6.625e-1428.13Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAMP7_HUMAN6.625e-1428.13Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_CHICK6.625e-1429.81Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_BOVIN6.625e-1428.13Vesicle-associated membrane protein 7 OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YG18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260133 ID=DY260133; Name=DY260133; organism=Citrus clementina; type=EST; length=629bp
CTCGTTGATGACCCTTTCACTTACTGTGTGGTTGCAGTTGAATCTGTTGG
TCGACAGGTTCCAATTGCCTTCCTTGAGCGTGTGAACTACGATTTTACAA
AGAGATATGGTGGAGGAAAAGCTGCAACAGCGGTCGCTAACGGCTTGAAC
AAGGAGTTTGGGCCCAAATTGAAGGAGCATATGCAGTACTGCATCGATCA
TCCAGAGGAGATCAGCAAGCTTGCTAAAGTGAAGGCTCAGGTGTCAGAAG
TCAAAGGTGTTATGATGGATAACATAGAGAAGGTTCTTGATCGTGGAGAG
AAAATTGAGCTTCTGGTGGATAGAACAGAGAATCTTCGCTCACAGGCGCA
GGATTTCAGACAGCAGGGAACCCAGATGAGGAGAAAGATGTGGTTTCAGA
ACATGAAGATCAAACTGATTGTTCTGGGAATCATAATTGCCTTGATTCTC
ATTATTGTATTATCTGTATGCGGTGGCTTCAATTGTTGATGATACCTTCG
TACTCTATTAGTATTGTTGCTGCTTGTCAACTGTTTCTTGATGTGTTTAC
TCGTAATTTTGTCCCGTTCCCACAAGACCAATGCTTGTAAAGTCTGTACT
TTTTGAATTGCTCTGATACCAAATTTCTT
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