DY260142
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 4.188e-46 Identity = 75/108 (69.44%), Postives = 85/108 (78.70%), Query Frame = 1
Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCV---NDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
GGACGYGNLYS+GYGTNTAALSTALFNNG+SCGACFE++C C PGS+ VTATNFC GGWCNPP+ HFD+SQPVF++IA +KAGIVPVSYRR
Sbjct: 82 GGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRR 189 HSP 2 Score: 43.1282 bits (100), Expect = 4.188e-46 Identity = 18/22 (81.82%), Postives = 19/22 (86.36%), Query Frame = 3
Query: 105 GQGWTDAPATFYGGGDASGTMG 170
G GW+ A ATFYGGGDASGTMG
Sbjct: 61 GGGWSSAHATFYGGGDASGTMG 82
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 2.055e-45 Identity = 77/111 (69.37%), Postives = 85/111 (76.58%), Query Frame = 1
Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDP--RWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
GGACGYGNLYS+GYG N AALSTALFN+G SCGACFEIKCVN P WC PG SI +TATNFC GGWCNPP+ HFDL+ P+F IA+Y+AGIVPVSYRR P
Sbjct: 54 GGACGYGNLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVP 164 HSP 2 Score: 38.1206 bits (87), Expect = 2.055e-45 Identity = 18/24 (75.00%), Postives = 18/24 (75.00%), Query Frame = 3
Query: 102 YGQG-WTDAPATFYGGGDASGTMG 170
YG G W A ATFYGG DASGTMG
Sbjct: 31 YGGGEWQSAHATFYGGSDASGTMG 54
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2) HSP 1 Score: 166.392 bits (420), Expect = 1.007e-44 Identity = 72/107 (67.29%), Postives = 85/107 (79.44%), Query Frame = 1
Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
GGACGYGNL+S+GYG TAALSTALFN+G CGACFE++C +DP WC PGSI V+ATNFC GGWCNPP +HFDL++P F QIAQY+AGIVPV++RR P
Sbjct: 50 GGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGSIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVP 156 HSP 2 Score: 36.1946 bits (82), Expect = 1.007e-44 Identity = 15/20 (75.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query: 111 GWTDAPATFYGGGDASGTMG 170
GW ATFYGG DASGTMG
Sbjct: 31 GWERGHATFYGGADASGTMG 50
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2) HSP 1 Score: 163.31 bits (412), Expect = 1.313e-44 Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 1
Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
GGACGYGNLYS GYGTNTAALST LFN+G +CG+C+E++C ND +WC PGS+ VTATN C GGWCNPP+ HFD+++P F QI Y+AGIVPVSYRR P
Sbjct: 47 GGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVP 153 HSP 2 Score: 38.891 bits (89), Expect = 1.313e-44 Identity = 18/23 (78.26%), Postives = 18/23 (78.26%), Query Frame = 3
Query: 102 YGQGWTDAPATFYGGGDASGTMG 170
YG W A ATFYGGGDASGTMG
Sbjct: 26 YGS-WQSAHATFYGGGDASGTMG 47
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 2.230e-44 Identity = 71/107 (66.36%), Postives = 84/107 (78.50%), Query Frame = 1
Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
GGACGYGNLYS+GYGTNTAALSTALFN+G +CG+C+E++C N C PGSI VTATNFC GGWCNPP+ HFD+++P F IAQY+AGIVPVS+RR P
Sbjct: 42 GGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVP 148 HSP 2 Score: 41.2022 bits (95), Expect = 2.230e-44 Identity = 19/23 (82.61%), Postives = 19/23 (82.61%), Query Frame = 3
Query: 102 YGQGWTDAPATFYGGGDASGTMG 170
YG GW A ATFYGGGDASGTMG
Sbjct: 21 YG-GWQSAHATFYGGGDASGTMG 42
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 2.230e-44 Identity = 71/107 (66.36%), Postives = 84/107 (78.50%), Query Frame = 1
Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
GGACGYGNLYS+GYGTNTAALSTALFN+G +CG+C+E++C N C PGSI VTATNFC GGWCNPP+ HFD+++P F IAQY+AGIVPVS+RR P
Sbjct: 42 GGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVP 148 HSP 2 Score: 41.2022 bits (95), Expect = 2.230e-44 Identity = 19/23 (82.61%), Postives = 19/23 (82.61%), Query Frame = 3
Query: 102 YGQGWTDAPATFYGGGDASGTMG 170
YG GW A ATFYGGGDASGTMG
Sbjct: 21 YG-GWQSAHATFYGGGDASGTMG 42
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 4.444e-42 Identity = 72/106 (67.92%), Postives = 83/106 (78.30%), Query Frame = 1
Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
GGACGYGNLYS+GYG TAALSTALF+ G+SCGACFE+ CVNDP+WC G SI VTATNFC GG C+PP HFDLSQP++E+IA YK+GI+PV YRR
Sbjct: 56 GGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFC--------PPGGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRR 153 HSP 2 Score: 38.891 bits (89), Expect = 4.444e-42 Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 3
Query: 114 WTDAPATFYGGGDASGTMG 170
W +A ATFYGGGDASGTMG
Sbjct: 38 WINAHATFYGGGDASGTMG 56
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 3.694e-41 Identity = 72/109 (66.06%), Postives = 81/109 (74.31%), Query Frame = 1
Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC-VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
GGACGYG+LY GYGT TAALSTALFN G SCGACF I C +WC+PG SI VTATNFC GGWCNPP++HFD+SQP +E IA Y+AGIVPV+YRR P
Sbjct: 43 GGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVP 151 HSP 2 Score: 37.3502 bits (85), Expect = 3.694e-41 Identity = 16/19 (84.21%), Postives = 16/19 (84.21%), Query Frame = 3
Query: 114 WTDAPATFYGGGDASGTMG 170
WT A ATFYGG DASGTMG
Sbjct: 25 WTPAFATFYGGSDASGTMG 43
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 8.836e-40 Identity = 67/110 (60.91%), Postives = 82/110 (74.55%), Query Frame = 1
Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVN--DPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
GGACGYGNLY++GYGT TAALSTALF++G SCG C+ + C DPRWCR G S+ VTATNFC GGWCNPP+ HFD++QP +E+I Y+ GIVPV++RR P
Sbjct: 52 GGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVP 161 HSP 2 Score: 37.7354 bits (86), Expect = 8.836e-40 Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query: 111 GWTDAPATFYGGGDASGTMG 170
GW+ ATFYGG DASGTMG
Sbjct: 33 GWSKGTATFYGGSDASGTMG 52
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 8.838e-40 Identity = 68/108 (62.96%), Postives = 85/108 (78.70%), Query Frame = 1
Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVND-PRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
GGACGYGNLYS+GYGT+TAALSTALFN G+SCG+C+E++C D R C PG ++ VTATNFC GGWCNPP++HFDL++P F +IA++ AGIVPVS+RR
Sbjct: 46 GGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRR 153 HSP 2 Score: 36.5798 bits (83), Expect = 8.838e-40 Identity = 15/19 (78.95%), Postives = 15/19 (78.95%), Query Frame = 3
Query: 114 WTDAPATFYGGGDASGTMG 170
W ATFYGGGDASGTMG
Sbjct: 28 WQPGHATFYGGGDASGTMG 46 The following BLAST results are available for this feature:
BLAST of DY260142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260142 ID=DY260142; Name=DY260142; organism=Citrus clementina; type=EST; length=1067bpback to top |