DY260142
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 2.978e-37 Identity = 65/108 (60.19%), Postives = 78/108 (72.22%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDP--RWCRP-GSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 GGACGYGNLY +GYG AALSTALFN+G +CG C+ I C D RWC+P G++ VTATN C GGWCNPP++HFD+SQP +E+I Y+AGIVPV YRR Sbjct: 45 GGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRR 152 HSP 2 Score: 34.6538 bits (78), Expect = 2.978e-37 Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 3 Query: 114 WTDAPATFYGGGDASGTMG 170 W A ATFYGG D SGTMG Sbjct: 27 WIPATATFYGGNDGSGTMG 45
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 3.878e-37 Identity = 65/113 (57.52%), Postives = 78/113 (69.03%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVN----DPRWCRPG----SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 GGACGYGN Y +GYGT+TAALS +F +G+SCGACFE++C D R C P SI VTAT+ C GGWCNPP HFDLSQP F +IA++++GIVPVSYRR Sbjct: 48 GGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRR 160 HSP 2 Score: 40.817 bits (94), Expect = 3.878e-37 Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = 3 Query: 114 WTDAPATFYGGGDASGTMG 170 WTDA ATFYGG DASGTMG Sbjct: 30 WTDAHATFYGGADASGTMG 48
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 3.882e-37 Identity = 64/109 (58.72%), Postives = 79/109 (72.48%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC-VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579 GGACGYGNLY+ GYG N AALS+ALFN+G CGAC+ I C + WC+PG SI +TATN C GGWCNPP++HFD+SQP + IA Y+AGIVPV+++R P Sbjct: 41 GGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVP 149 HSP 2 Score: 35.8094 bits (81), Expect = 3.882e-37 Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 3 Query: 114 WTDAPATFYGGGDASGTMG 170 WT A ATFYGG D +GTMG Sbjct: 23 WTPATATFYGGSDGAGTMG 41
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2) HSP 1 Score: 154.451 bits (389), Expect = 6.576e-37 Identity = 68/104 (65.38%), Postives = 82/104 (78.85%), Query Frame = 1 Query: 262 GACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 GACGYG+L+ +GYG TAALSTALFN G +CGAC++I CV+DP+WC PG+I +TATNFC G WCNPPQ+HFDLS P+F +IAQYKAG+VPV YRR Sbjct: 74 GACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFC--PPDYSKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRR 175 HSP 2 Score: 21.9422 bits (45), Expect = 6.576e-37 Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 3 Query: 114 WTDAPATFYG 143 W DA ATFYG Sbjct: 55 WYDARATFYG 64
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 6.586e-37 Identity = 63/107 (58.88%), Postives = 82/107 (76.64%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC-VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 GGACGYGNLYS GYGTNTAALS+ALFN+G +CG C++I C ++ +WC+ G S+ +TATN C GGWCNPP+QHFD++QP +EQI Y+ GIVPV+++R Sbjct: 42 GGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQR 148 HSP 2 Score: 31.5722 bits (70), Expect = 6.586e-37 Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 3 Query: 129 ATFYGGGDASGTMG 170 ATFYGG DASGTMG Sbjct: 29 ATFYGGSDASGTMG 42
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2) HSP 1 Score: 144.821 bits (364), Expect = 3.218e-36 Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC-VNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579 GGACGYGNLY+ GYG AALS+ALFN+G CGAC+ I C + +WC+PG SI +TATN C GGWCNPP+QHFD+SQP +E IA Y+AGIVPV+Y+R P Sbjct: 46 GGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVP 155 HSP 2 Score: 29.261 bits (64), Expect = 3.218e-36 Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 3 Query: 129 ATFYGGGDASGTMG 170 ATFYGG D SGTMG Sbjct: 33 ATFYGGKDGSGTMG 46
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 3.218e-36 Identity = 61/108 (56.48%), Postives = 77/108 (71.30%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 GGACGYGNLY+ GYGTNTAALS+ LFN+G SCG C+ I C P+WCR G ++ +TATN C GGWCNPP+ HFD+++P + QI YKAGI+PV Y++ Sbjct: 45 GGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQ 152 HSP 2 Score: 37.3502 bits (85), Expect = 3.218e-36 Identity = 15/20 (75.00%), Postives = 15/20 (75.00%), Query Frame = 3 Query: 111 GWTDAPATFYGGGDASGTMG 170 GW ATFYGG DASGTMG Sbjct: 26 GWNKGTATFYGGADASGTMG 45
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 3.219e-36 Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 GGACGYG+LYS GYGT TAALSTALFN+G SCG C+ I C D RWC G S+ +TATNFC GGWCNPP +HFD++QP +E+I Y+ GIVPV ++R Sbjct: 44 GGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQR 151 HSP 2 Score: 34.6538 bits (78), Expect = 3.219e-36 Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 3 Query: 111 GWTDAPATFYGGGDASGTMG 170 G T+ ATFYGG DASGTMG Sbjct: 25 GLTNGHATFYGGSDASGTMG 44
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 5.452e-36 Identity = 67/106 (63.21%), Postives = 80/106 (75.47%), Query Frame = 1 Query: 262 GACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579 GACGYGNL+ +GYG TAALSTALFN+G +CGAC+EI C DP+WC PGS+ +TATNFC WCNPPQ+HFDLS +F +IA+YKAG+VPV YRR P Sbjct: 77 GACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIP 180 HSP 2 Score: 23.483 bits (49), Expect = 5.452e-36 Identity = 11/16 (68.75%), Postives = 11/16 (68.75%), Query Frame = 3 Query: 114 WTDAPATFYG---GGD 152 W DA ATFYG GGD Sbjct: 58 WYDARATFYGDIHGGD 73
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 5.454e-36 Identity = 67/106 (63.21%), Postives = 80/106 (75.47%), Query Frame = 1 Query: 262 GACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579 GACGYGNL+ +GYG TAALSTALFN+G +CGAC+EI C DP+WC PGS+ +TATNFC WCNPPQ+HFDLS +F +IA+YKAG+VPV YRR P Sbjct: 71 GACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIP 174 HSP 2 Score: 23.483 bits (49), Expect = 5.454e-36 Identity = 11/16 (68.75%), Postives = 11/16 (68.75%), Query Frame = 3 Query: 114 WTDAPATFYG---GGD 152 W DA ATFYG GGD Sbjct: 52 WYDARATFYGDIHGGD 67 The following BLAST results are available for this feature:
BLAST of DY260142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260142 ID=DY260142; Name=DY260142; organism=Citrus clementina; type=EST; length=1067bpback to top |