DY260142

Overview
NameDY260142
Unique NameDY260142
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1067
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260142_ssr243 microsatellite DY260142_ssr243:243..254. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.978e-37
Identity = 65/108 (60.19%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDP--RWCRP-GSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACGYGNLY +GYG   AALSTALFN+G +CG C+ I C  D   RWC+P G++ VTATN C          GGWCNPP++HFD+SQP +E+I  Y+AGIVPV YRR
Sbjct:   45 GGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRR 152          

HSP 2 Score: 34.6538 bits (78), Expect = 2.978e-37
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  114 WTDAPATFYGGGDASGTMG 170
            W  A ATFYGG D SGTMG
Sbjct:   27 WIPATATFYGGNDGSGTMG 45          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 3.878e-37
Identity = 65/113 (57.52%), Postives = 78/113 (69.03%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVN----DPRWCRPG----SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACGYGN Y +GYGT+TAALS  +F +G+SCGACFE++C      D R C P     SI VTAT+ C          GGWCNPP  HFDLSQP F +IA++++GIVPVSYRR
Sbjct:   48 GGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRR 160          

HSP 2 Score: 40.817 bits (94), Expect = 3.878e-37
Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = 3
Query:  114 WTDAPATFYGGGDASGTMG 170
            WTDA ATFYGG DASGTMG
Sbjct:   30 WTDAHATFYGGADASGTMG 48          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.882e-37
Identity = 64/109 (58.72%), Postives = 79/109 (72.48%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC-VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GGACGYGNLY+ GYG N AALS+ALFN+G  CGAC+ I C  +   WC+PG SI +TATN C          GGWCNPP++HFD+SQP +  IA Y+AGIVPV+++R P
Sbjct:   41 GGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVP 149          

HSP 2 Score: 35.8094 bits (81), Expect = 3.882e-37
Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  114 WTDAPATFYGGGDASGTMG 170
            WT A ATFYGG D +GTMG
Sbjct:   23 WTPATATFYGGSDGAGTMG 41          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 6.576e-37
Identity = 68/104 (65.38%), Postives = 82/104 (78.85%), Query Frame = 1
Query:  262 GACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GACGYG+L+ +GYG  TAALSTALFN G +CGAC++I CV+DP+WC PG+I +TATNFC          G WCNPPQ+HFDLS P+F +IAQYKAG+VPV YRR
Sbjct:   74 GACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFC--PPDYSKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRR 175          

HSP 2 Score: 21.9422 bits (45), Expect = 6.576e-37
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 3
Query:  114 WTDAPATFYG 143
            W DA ATFYG
Sbjct:   55 WYDARATFYG 64          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.586e-37
Identity = 63/107 (58.88%), Postives = 82/107 (76.64%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC-VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACGYGNLYS GYGTNTAALS+ALFN+G +CG C++I C  ++ +WC+ G S+ +TATN C          GGWCNPP+QHFD++QP +EQI  Y+ GIVPV+++R
Sbjct:   42 GGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQR 148          

HSP 2 Score: 31.5722 bits (70), Expect = 6.586e-37
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  129 ATFYGGGDASGTMG 170
            ATFYGG DASGTMG
Sbjct:   29 ATFYGGSDASGTMG 42          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.218e-36
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC-VNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GGACGYGNLY+ GYG   AALS+ALFN+G  CGAC+ I C  +  +WC+PG  SI +TATN C          GGWCNPP+QHFD+SQP +E IA Y+AGIVPV+Y+R P
Sbjct:   46 GGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVP 155          

HSP 2 Score: 29.261 bits (64), Expect = 3.218e-36
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  129 ATFYGGGDASGTMG 170
            ATFYGG D SGTMG
Sbjct:   33 ATFYGGKDGSGTMG 46          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.218e-36
Identity = 61/108 (56.48%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACGYGNLY+ GYGTNTAALS+ LFN+G SCG C+ I C     P+WCR G ++ +TATN C          GGWCNPP+ HFD+++P + QI  YKAGI+PV Y++
Sbjct:   45 GGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQ 152          

HSP 2 Score: 37.3502 bits (85), Expect = 3.218e-36
Identity = 15/20 (75.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:  111 GWTDAPATFYGGGDASGTMG 170
            GW    ATFYGG DASGTMG
Sbjct:   26 GWNKGTATFYGGADASGTMG 45          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 3.219e-36
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACGYG+LYS GYGT TAALSTALFN+G SCG C+ I C    D RWC  G S+ +TATNFC          GGWCNPP +HFD++QP +E+I  Y+ GIVPV ++R
Sbjct:   44 GGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQR 151          

HSP 2 Score: 34.6538 bits (78), Expect = 3.219e-36
Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:  111 GWTDAPATFYGGGDASGTMG 170
            G T+  ATFYGG DASGTMG
Sbjct:   25 GLTNGHATFYGGSDASGTMG 44          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 5.452e-36
Identity = 67/106 (63.21%), Postives = 80/106 (75.47%), Query Frame = 1
Query:  262 GACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GACGYGNL+ +GYG  TAALSTALFN+G +CGAC+EI C  DP+WC PGS+ +TATNFC            WCNPPQ+HFDLS  +F +IA+YKAG+VPV YRR P
Sbjct:   77 GACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIP 180          

HSP 2 Score: 23.483 bits (49), Expect = 5.452e-36
Identity = 11/16 (68.75%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  114 WTDAPATFYG---GGD 152
            W DA ATFYG   GGD
Sbjct:   58 WYDARATFYGDIHGGD 73          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 5.454e-36
Identity = 67/106 (63.21%), Postives = 80/106 (75.47%), Query Frame = 1
Query:  262 GACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GACGYGNL+ +GYG  TAALSTALFN+G +CGAC+EI C  DP+WC PGS+ +TATNFC            WCNPPQ+HFDLS  +F +IA+YKAG+VPV YRR P
Sbjct:   71 GACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIP 174          

HSP 2 Score: 23.483 bits (49), Expect = 5.454e-36
Identity = 11/16 (68.75%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  114 WTDAPATFYG---GGD 152
            W DA ATFYG   GGD
Sbjct:   52 WYDARATFYGDIHGGD 67          
The following BLAST results are available for this feature:
BLAST of DY260142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP27_ORYSJ2.978e-3760.19Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP21_ORYSJ3.878e-3757.52Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP33_ORYSJ3.882e-3758.72Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ARATH6.576e-3765.38Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP12_ORYSJ6.586e-3758.88Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA3_ORYSJ3.218e-3660.00Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP25_ORYSJ3.218e-3656.48Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH3.219e-3659.26Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP26_ARATH5.452e-3663.21Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH5.454e-3663.21Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260142 ID=DY260142; Name=DY260142; organism=Citrus clementina; type=EST; length=1067bp
CTCTTTCTCTCTTAAAAAAGATACCCAAGCAAAAGGGTTTCAGGAACATG
GCATTTCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAGTCTCATCTGT
TTATGGCCAGGGATGGACTGATGCTCCTGCCACTTTTTATGGTGGGGGTG
ATGCCTCTGGTACAATGGGTACGTCGTATGCCTGTCATAAACCTTTTTCG
TTTCATGTTATTTTGATCAACATTAAAACCAAATTGCTGATGATTAATTA
ATTATTCAGGTGGCGCTTGTGGGTATGGAAACTTATACAGCGAGGGATAT
GGGACAAACACAGCAGCTCTGAGCACTGCGCTTTTCAACAATGGCATGAG
CTGTGGGGCTTGTTTTGAGATCAAGTGTGTTAATGACCCAAGATGGTGCC
GTCCGGGCTCCATTTTTGTTACTGCCACAAATTTTTGCCCTCCAAATAAT
GCTCTCCCCAACAATGCCGGTGGCTGGTGCAATCCTCCCCAGCAACATTT
TGACCTCTCTCAGCCTGTGTTTGAACAAATTGCTCAGTACAAAGCTGGGA
TAGTACCTGTGTCTTACAGAAGGTGACCCGTTTGAATCCTACAAATATTC
ATATTGTTTTTTATTCGGGCACTATTTGGTCCTGTGTTTAACTAGCAAGC
AGTTAAAATGATTATTCCAATCTTCTGACCTTGTTTTGGGGATTAATTCA
ATTTTACTCCCGATGGAAAATCAATACATTTATTACTTTACCCTGAACCC
TTGTTCCGTAAGTTCCAGAGCCCAAAAACAAAAAAGTGTTGGGTAAACAA
AAAAAAAAAAAAAAAAACCCCAATTTTCTTGTAACAAGTTGGGCTTAAAA
AAAAAGCCTTGCTTAACCATTTGTTCGCACCAAACAGGCCCCTACCCTTC
AAAAAAAATCATTATTTCCCCCCCCCCGAAAACCCCCCTAAATGGGTCCC
AAATTCAAGGGCGCACAACTGTTTTCCCGGCCCTCCCCGGCCCCTGGTCC
CAAAATCCCCTTAGGTTCCTTTTTCCCCAAAAAAAAAAATTACTCCCCCG
GTTTACAAAAACCCCCC
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