DY260142
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2) HSP 1 Score: 151.754 bits (382), Expect = 6.585e-36 Identity = 68/106 (64.15%), Postives = 81/106 (76.42%), Query Frame = 1 Query: 262 GACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579 GACGYG+L+ +GYG TAALSTALFNNG CGAC+EI C + P+WC PGSI +TATNFC WCNPPQ+HFDLSQP+F +IA+YKAG+VPV +RR P Sbjct: 109 GACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFC--PPDFTKPNDNWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVP 212
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 7.111e-36 Identity = 63/108 (58.33%), Postives = 76/108 (70.37%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVND--PRWCRPGS-IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 GGACGYGNLY +GYG + AALS ALFN+G SCG C+ I C P+WC+ G+ + VTATN C GGWCNPP+ HFD+SQP +EQI Y+AGIVPV Y+R Sbjct: 46 GGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQR 153 HSP 2 Score: 35.4242 bits (80), Expect = 7.111e-36 Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 3 Query: 114 WTDAPATFYGGGDASGTMG 170 W+ A ATFYGG D SGTMG Sbjct: 28 WSPATATFYGGSDGSGTMG 46
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 2.048e-35 Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 GGACGYGNLY++GYG AALSTALFN G SCG C+ I C P WC+ G ++ +TATN C GGWCNPP+ HFD+SQP +E I Y+AGIVPV Y++ Sbjct: 45 GGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQ 152 HSP 2 Score: 36.965 bits (84), Expect = 2.048e-35 Identity = 15/20 (75.00%), Postives = 15/20 (75.00%), Query Frame = 3 Query: 111 GWTDAPATFYGGGDASGTMG 170 GW ATFYGG DASGTMG Sbjct: 26 GWVSGTATFYGGKDASGTMG 45
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 2.666e-35 Identity = 63/110 (57.27%), Postives = 76/110 (69.09%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579 GGACGYG+LYS GYGTNTAALST LFN+G SCG C+ I C D R+C G S+ +TATN C GGWCNPP+QHFD+++P + +I Y GIVPV Y+R P Sbjct: 52 GGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVP 161 HSP 2 Score: 37.7354 bits (86), Expect = 2.666e-35 Identity = 16/20 (80.00%), Postives = 16/20 (80.00%), Query Frame = 3 Query: 111 GWTDAPATFYGGGDASGTMG 170 GW A ATFYGG DASGTMG Sbjct: 33 GWNKAFATFYGGSDASGTMG 52
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.079e-33 Identity = 64/107 (59.81%), Postives = 75/107 (70.09%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 GGACGYGN+Y GYG T ALSTALFN G +CG CF++KCV+ P C GS VTATN C GGWCNPP+ HFDL++P F +IA +KAGI+PVSYRR Sbjct: 49 GGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRR 154 HSP 2 Score: 27.7202 bits (60), Expect = 1.079e-33 Identity = 12/22 (54.55%), Postives = 12/22 (54.55%), Query Frame = 3 Query: 105 GQGWTDAPATFYGGGDASGTMG 170 G W A ATFYG S TMG Sbjct: 28 GTPWRTASATFYGDDTGSATMG 49
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 1.829e-33 Identity = 62/108 (57.41%), Postives = 73/108 (67.59%), Query Frame = 1 Query: 262 GACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579 GACGY + EGYG T A+ST LF G CGAC+E+KCV+ P C+ G+ + VTATN C GGWCNPP++HFDLS P F QIAQ KAGIVP+SYRR P Sbjct: 61 GACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVP 168 HSP 2 Score: 30.4166 bits (67), Expect = 1.829e-33 Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 3 Query: 114 WTDAPATFYGGGDASGTM 167 W A ATFYGG D SGT+ Sbjct: 42 WKQAHATFYGGRDGSGTL 59
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 7.397e-32 Identity = 62/108 (57.41%), Postives = 71/108 (65.74%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVND--PRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 GGACGYGNLY +GYG N AALST LFNNG SCG C+ I C D P CR G +I VT TNFC GGWCN + HFD+SQP +E I Y AGIVP+ Y++ Sbjct: 41 GGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFC--PPNYDLPYGGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQ 146 HSP 2 Score: 35.8094 bits (81), Expect = 7.397e-32 Identity = 14/20 (70.00%), Postives = 14/20 (70.00%), Query Frame = 3 Query: 111 GWTDAPATFYGGGDASGTMG 170 GW ATFYGG D SGTMG Sbjct: 22 GWLQGTATFYGGADGSGTMG 41
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.124e-31 Identity = 63/111 (56.76%), Postives = 76/111 (68.47%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFC--XXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579 GGACGYGNLY+ GYGT+TAALST LF +G CG C++++CV C GS I VTATN C GGWCNPP+ HFDLS+P F ++A ++AGIVPV YRR P Sbjct: 55 GGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVP 164 HSP 2 Score: 28.8758 bits (63), Expect = 2.124e-31 Identity = 13/19 (68.42%), Postives = 13/19 (68.42%), Query Frame = 3 Query: 114 WTDAPATFYGGGDASGTMG 170 WT A ATFYG AS TMG Sbjct: 37 WTPAHATFYGDETASETMG 55
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 6.110e-31 Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579 GGACGYGNL++ GYG +TAALST LFN+G CG CF+I C P S VTATN C GGWCNPP+ HFD+++P F ++A ++AGI+PV+YRR P Sbjct: 55 GGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVP 161 HSP 2 Score: 22.7126 bits (47), Expect = 6.110e-31 Identity = 10/19 (52.63%), Postives = 10/19 (52.63%), Query Frame = 3 Query: 114 WTDAPATFYGGGDASGTMG 170 W A ATFYG TMG Sbjct: 37 WRYAHATFYGDETGGETMG 55
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 2.290e-30 Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 GGACGYGNLY +GYG N AALST LFN+G SCG C+ I C P WC+ G +I VT TN+C GGWCN + HFD+SQP +E I Y AGI+P+ Y++ Sbjct: 41 GGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYC--PPNYDLPYGGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQ 146 HSP 2 Score: 33.113 bits (74), Expect = 2.290e-30 Identity = 13/19 (68.42%), Postives = 13/19 (68.42%), Query Frame = 3 Query: 114 WTDAPATFYGGGDASGTMG 170 W ATFYGG D SGTMG Sbjct: 23 WLPGTATFYGGADGSGTMG 41 The following BLAST results are available for this feature:
BLAST of DY260142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260142 ID=DY260142; Name=DY260142; organism=Citrus clementina; type=EST; length=1067bpback to top |