DY260142

Overview
NameDY260142
Unique NameDY260142
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1067
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260142_ssr243 microsatellite DY260142_ssr243:243..254. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 6.585e-36
Identity = 68/106 (64.15%), Postives = 81/106 (76.42%), Query Frame = 1
Query:  262 GACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GACGYG+L+ +GYG  TAALSTALFNNG  CGAC+EI C + P+WC PGSI +TATNFC            WCNPPQ+HFDLSQP+F +IA+YKAG+VPV +RR P
Sbjct:  109 GACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFC--PPDFTKPNDNWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVP 212          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.111e-36
Identity = 63/108 (58.33%), Postives = 76/108 (70.37%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVND--PRWCRPGS-IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACGYGNLY +GYG + AALS ALFN+G SCG C+ I C     P+WC+ G+ + VTATN C          GGWCNPP+ HFD+SQP +EQI  Y+AGIVPV Y+R
Sbjct:   46 GGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQR 153          

HSP 2 Score: 35.4242 bits (80), Expect = 7.111e-36
Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  114 WTDAPATFYGGGDASGTMG 170
            W+ A ATFYGG D SGTMG
Sbjct:   28 WSPATATFYGGSDGSGTMG 46          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 2.048e-35
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACGYGNLY++GYG   AALSTALFN G SCG C+ I C     P WC+ G ++ +TATN C          GGWCNPP+ HFD+SQP +E I  Y+AGIVPV Y++
Sbjct:   45 GGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQ 152          

HSP 2 Score: 36.965 bits (84), Expect = 2.048e-35
Identity = 15/20 (75.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:  111 GWTDAPATFYGGGDASGTMG 170
            GW    ATFYGG DASGTMG
Sbjct:   26 GWVSGTATFYGGKDASGTMG 45          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 2.666e-35
Identity = 63/110 (57.27%), Postives = 76/110 (69.09%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GGACGYG+LYS GYGTNTAALST LFN+G SCG C+ I C    D R+C  G S+ +TATN C          GGWCNPP+QHFD+++P + +I  Y  GIVPV Y+R P
Sbjct:   52 GGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVP 161          

HSP 2 Score: 37.7354 bits (86), Expect = 2.666e-35
Identity = 16/20 (80.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:  111 GWTDAPATFYGGGDASGTMG 170
            GW  A ATFYGG DASGTMG
Sbjct:   33 GWNKAFATFYGGSDASGTMG 52          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.079e-33
Identity = 64/107 (59.81%), Postives = 75/107 (70.09%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACGYGN+Y  GYG  T ALSTALFN G +CG CF++KCV+ P  C  GS    VTATN C          GGWCNPP+ HFDL++P F +IA +KAGI+PVSYRR
Sbjct:   49 GGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRR 154          

HSP 2 Score: 27.7202 bits (60), Expect = 1.079e-33
Identity = 12/22 (54.55%), Postives = 12/22 (54.55%), Query Frame = 3
Query:  105 GQGWTDAPATFYGGGDASGTMG 170
            G  W  A ATFYG    S TMG
Sbjct:   28 GTPWRTASATFYGDDTGSATMG 49          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.829e-33
Identity = 62/108 (57.41%), Postives = 73/108 (67.59%), Query Frame = 1
Query:  262 GACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GACGY +   EGYG  T A+ST LF  G  CGAC+E+KCV+ P  C+ G+  + VTATN C          GGWCNPP++HFDLS P F QIAQ KAGIVP+SYRR P
Sbjct:   61 GACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVP 168          

HSP 2 Score: 30.4166 bits (67), Expect = 1.829e-33
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  114 WTDAPATFYGGGDASGTM 167
            W  A ATFYGG D SGT+
Sbjct:   42 WKQAHATFYGGRDGSGTL 59          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 7.397e-32
Identity = 62/108 (57.41%), Postives = 71/108 (65.74%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVND--PRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACGYGNLY +GYG N AALST LFNNG SCG C+ I C  D  P  CR G +I VT TNFC          GGWCN  + HFD+SQP +E I  Y AGIVP+ Y++
Sbjct:   41 GGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFC--PPNYDLPYGGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQ 146          

HSP 2 Score: 35.8094 bits (81), Expect = 7.397e-32
Identity = 14/20 (70.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:  111 GWTDAPATFYGGGDASGTMG 170
            GW    ATFYGG D SGTMG
Sbjct:   22 GWLQGTATFYGGADGSGTMG 41          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.124e-31
Identity = 63/111 (56.76%), Postives = 76/111 (68.47%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFC--XXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GGACGYGNLY+ GYGT+TAALST LF +G  CG C++++CV     C  GS  I VTATN C            GGWCNPP+ HFDLS+P F ++A ++AGIVPV YRR P
Sbjct:   55 GGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVP 164          

HSP 2 Score: 28.8758 bits (63), Expect = 2.124e-31
Identity = 13/19 (68.42%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  114 WTDAPATFYGGGDASGTMG 170
            WT A ATFYG   AS TMG
Sbjct:   37 WTPAHATFYGDETASETMG 55          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.110e-31
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GGACGYGNL++ GYG +TAALST LFN+G  CG CF+I C   P      S  VTATN C          GGWCNPP+ HFD+++P F ++A ++AGI+PV+YRR P
Sbjct:   55 GGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVP 161          

HSP 2 Score: 22.7126 bits (47), Expect = 6.110e-31
Identity = 10/19 (52.63%), Postives = 10/19 (52.63%), Query Frame = 3
Query:  114 WTDAPATFYGGGDASGTMG 170
            W  A ATFYG      TMG
Sbjct:   37 WRYAHATFYGDETGGETMG 55          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.290e-30
Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACGYGNLY +GYG N AALST LFN+G SCG C+ I C     P WC+ G +I VT TN+C          GGWCN  + HFD+SQP +E I  Y AGI+P+ Y++
Sbjct:   41 GGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYC--PPNYDLPYGGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQ 146          

HSP 2 Score: 33.113 bits (74), Expect = 2.290e-30
Identity = 13/19 (68.42%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  114 WTDAPATFYGGGDASGTMG 170
            W    ATFYGG D SGTMG
Sbjct:   23 WLPGTATFYGGADGSGTMG 41          
The following BLAST results are available for this feature:
BLAST of DY260142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP24_ARATH6.585e-3664.15Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP31_ORYSJ7.111e-3658.33Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ2.048e-3556.48Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ2.666e-3557.27Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP18_ARATH1.079e-3359.81Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP32_ORYSJ1.829e-3357.41Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ORYSJ7.397e-3257.41Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP30_ORYSJ2.124e-3156.76Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXPA7_ARATH6.110e-3154.21Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP19_ORYSJ2.290e-3053.70Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260142 ID=DY260142; Name=DY260142; organism=Citrus clementina; type=EST; length=1067bp
CTCTTTCTCTCTTAAAAAAGATACCCAAGCAAAAGGGTTTCAGGAACATG
GCATTTCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAGTCTCATCTGT
TTATGGCCAGGGATGGACTGATGCTCCTGCCACTTTTTATGGTGGGGGTG
ATGCCTCTGGTACAATGGGTACGTCGTATGCCTGTCATAAACCTTTTTCG
TTTCATGTTATTTTGATCAACATTAAAACCAAATTGCTGATGATTAATTA
ATTATTCAGGTGGCGCTTGTGGGTATGGAAACTTATACAGCGAGGGATAT
GGGACAAACACAGCAGCTCTGAGCACTGCGCTTTTCAACAATGGCATGAG
CTGTGGGGCTTGTTTTGAGATCAAGTGTGTTAATGACCCAAGATGGTGCC
GTCCGGGCTCCATTTTTGTTACTGCCACAAATTTTTGCCCTCCAAATAAT
GCTCTCCCCAACAATGCCGGTGGCTGGTGCAATCCTCCCCAGCAACATTT
TGACCTCTCTCAGCCTGTGTTTGAACAAATTGCTCAGTACAAAGCTGGGA
TAGTACCTGTGTCTTACAGAAGGTGACCCGTTTGAATCCTACAAATATTC
ATATTGTTTTTTATTCGGGCACTATTTGGTCCTGTGTTTAACTAGCAAGC
AGTTAAAATGATTATTCCAATCTTCTGACCTTGTTTTGGGGATTAATTCA
ATTTTACTCCCGATGGAAAATCAATACATTTATTACTTTACCCTGAACCC
TTGTTCCGTAAGTTCCAGAGCCCAAAAACAAAAAAGTGTTGGGTAAACAA
AAAAAAAAAAAAAAAAACCCCAATTTTCTTGTAACAAGTTGGGCTTAAAA
AAAAAGCCTTGCTTAACCATTTGTTCGCACCAAACAGGCCCCTACCCTTC
AAAAAAAATCATTATTTCCCCCCCCCCGAAAACCCCCCTAAATGGGTCCC
AAATTCAAGGGCGCACAACTGTTTTCCCGGCCCTCCCCGGCCCCTGGTCC
CAAAATCCCCTTAGGTTCCTTTTTCCCCAAAAAAAAAAATTACTCCCCCG
GTTTACAAAAACCCCCC
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