DY260142

Overview
NameDY260142
Unique NameDY260142
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1067
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 2.268e-28
Identity = 60/106 (56.60%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACGYG+L   GYG  T  LS  LF  G  CGACFE++CV+D RWC PG SI +TATNFC          GG CNPP +HF L    FE+IA +KAG +PV YRR
Sbjct:   58 GGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 163          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 8.620e-28
Identity = 58/106 (54.72%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACG+G+L   GYG  T  LSTALF  G +CG C+E+KCV+D ++C PG SI VTATNFC          GG CNPP  HF L    FE+IA +KAG++P+ YRR
Sbjct:   50 GGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRR 155          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.291e-27
Identity = 56/108 (51.85%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACGYGNLY + YG N AALST LFN+G SCG C+ I C     P WC+ G +I VT TN+           GGWCN  + +FD+SQP +E I  Y AGIVP+ Y++
Sbjct:   41 GGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQ 137          

HSP 2 Score: 33.113 bits (74), Expect = 1.291e-27
Identity = 13/19 (68.42%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  114 WTDAPATFYGGGDASGTMG 170
            W    ATFYGG D SGTMG
Sbjct:   23 WLPGTATFYGGADGSGTMG 41          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 1.245e-26
Identity = 60/106 (56.60%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  262 GACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GACGYG+L   GYG  TAALSTALFN+G SCGAC+EI C  +P+ C  GSI +TAT+ C            WC  P +HFDLS P+F +IAQ KA +VPV YRR P
Sbjct:   65 GACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLC-------PPGSAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVP 163          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 3.622e-26
Identity = 58/110 (52.73%), Postives = 69/110 (62.73%), Query Frame = 1
Query:  259 GGACGY-GNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GGACGY  N     Y T TAALST LF +G  CG C+E++CV  P WC PGS  + +T TN C          GGWCNPP+ HFD++ P F ++AQ  AGIVPV YRR P
Sbjct:   71 GGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVP 179          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.376e-25
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 1
Query:  247 INYSGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            +N  GGACGYG+L    YG  TA +S ALF  G +CG C+E++CVN   WC  GS  + VTAT+FC          GGWCN P++HF++S+  F ++A+ KA IVPV +RR
Sbjct:   48 LNDGGGACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRR 158          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.830e-25
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  256 SGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            +GGACGYG+L    +   +A LS  LFN G SCGAC E++CVN  RWC  G  S+ VTAT+FC          GGWCN P++H +LS   F  IA+ +A ++P+ YRR
Sbjct:   47 TGGACGYGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRR 154          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.552e-24
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWC-RPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQY-KAGIVPVSYRR 573
            GGACGY N Y  G+G +TAALS  LF +G SCG C++++C    DP+WC R  ++ VTATNFC           GWCN P+ HFD+S P F +IA+    GIVPV YRR
Sbjct:   45 GGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFC-----PTNNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRR 148          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.914e-17
Identity = 45/105 (42.86%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACGY +  ++GYG  TAA+S ALF+NG  CGAC+E+K  +        ++ VTATN                    +HFDL+ P F  IA+ K G+VPVSYR+
Sbjct:  101 GGACGYKD--ADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPPPVNGMKG---------EHFDLTMPAFLSIAEEKLGVVPVSYRK 188          

HSP 2 Score: 32.3426 bits (72), Expect = 1.914e-17
Identity = 13/17 (76.47%), Postives = 13/17 (76.47%), Query Frame = 3
Query:  114 WTDAPATFYGGGDASGT 164
            W D  ATFYGG DASGT
Sbjct:   82 WVDGHATFYGGRDASGT 98          
The following BLAST results are available for this feature:
BLAST of DY260142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP13_ARATH2.268e-2856.60Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP10_ORYSJ8.620e-2854.72Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ1.291e-2751.85Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH1.245e-2656.60Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP17_ORYSJ3.622e-2652.73Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ1.376e-2548.65Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH6.830e-2548.15Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP12_ARATH7.552e-2451.38Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP26_ORYSJ1.914e-1742.86Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260142 ID=DY260142; Name=DY260142; organism=Citrus clementina; type=EST; length=1067bp
CTCTTTCTCTCTTAAAAAAGATACCCAAGCAAAAGGGTTTCAGGAACATG
GCATTTCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAGTCTCATCTGT
TTATGGCCAGGGATGGACTGATGCTCCTGCCACTTTTTATGGTGGGGGTG
ATGCCTCTGGTACAATGGGTACGTCGTATGCCTGTCATAAACCTTTTTCG
TTTCATGTTATTTTGATCAACATTAAAACCAAATTGCTGATGATTAATTA
ATTATTCAGGTGGCGCTTGTGGGTATGGAAACTTATACAGCGAGGGATAT
GGGACAAACACAGCAGCTCTGAGCACTGCGCTTTTCAACAATGGCATGAG
CTGTGGGGCTTGTTTTGAGATCAAGTGTGTTAATGACCCAAGATGGTGCC
GTCCGGGCTCCATTTTTGTTACTGCCACAAATTTTTGCCCTCCAAATAAT
GCTCTCCCCAACAATGCCGGTGGCTGGTGCAATCCTCCCCAGCAACATTT
TGACCTCTCTCAGCCTGTGTTTGAACAAATTGCTCAGTACAAAGCTGGGA
TAGTACCTGTGTCTTACAGAAGGTGACCCGTTTGAATCCTACAAATATTC
ATATTGTTTTTTATTCGGGCACTATTTGGTCCTGTGTTTAACTAGCAAGC
AGTTAAAATGATTATTCCAATCTTCTGACCTTGTTTTGGGGATTAATTCA
ATTTTACTCCCGATGGAAAATCAATACATTTATTACTTTACCCTGAACCC
TTGTTCCGTAAGTTCCAGAGCCCAAAAACAAAAAAGTGTTGGGTAAACAA
AAAAAAAAAAAAAAAAACCCCAATTTTCTTGTAACAAGTTGGGCTTAAAA
AAAAAGCCTTGCTTAACCATTTGTTCGCACCAAACAGGCCCCTACCCTTC
AAAAAAAATCATTATTTCCCCCCCCCCGAAAACCCCCCTAAATGGGTCCC
AAATTCAAGGGCGCACAACTGTTTTCCCGGCCCTCCCCGGCCCCTGGTCC
CAAAATCCCCTTAGGTTCCTTTTTCCCCAAAAAAAAAAATTACTCCCCCG
GTTTACAAAAACCCCCC
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