DY260142
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 2.268e-28 Identity = 60/106 (56.60%), Postives = 69/106 (65.09%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 GGACGYG+L GYG T LS LF G CGACFE++CV+D RWC PG SI +TATNFC GG CNPP +HF L FE+IA +KAG +PV YRR Sbjct: 58 GGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 163
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 8.620e-28 Identity = 58/106 (54.72%), Postives = 71/106 (66.98%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 GGACG+G+L GYG T LSTALF G +CG C+E+KCV+D ++C PG SI VTATNFC GG CNPP HF L FE+IA +KAG++P+ YRR Sbjct: 50 GGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRR 155
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.291e-27 Identity = 56/108 (51.85%), Postives = 69/108 (63.89%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 GGACGYGNLY + YG N AALST LFN+G SCG C+ I C P WC+ G +I VT TN+ GGWCN + +FD+SQP +E I Y AGIVP+ Y++ Sbjct: 41 GGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQ 137 HSP 2 Score: 33.113 bits (74), Expect = 1.291e-27 Identity = 13/19 (68.42%), Postives = 13/19 (68.42%), Query Frame = 3 Query: 114 WTDAPATFYGGGDASGTMG 170 W ATFYGG D SGTMG Sbjct: 23 WLPGTATFYGGADGSGTMG 41
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3) HSP 1 Score: 120.939 bits (302), Expect = 1.245e-26 Identity = 60/106 (56.60%), Postives = 71/106 (66.98%), Query Frame = 1 Query: 262 GACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579 GACGYG+L GYG TAALSTALFN+G SCGAC+EI C +P+ C GSI +TAT+ C WC P +HFDLS P+F +IAQ KA +VPV YRR P Sbjct: 65 GACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLC-------PPGSAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVP 163
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 3.622e-26 Identity = 58/110 (52.73%), Postives = 69/110 (62.73%), Query Frame = 1 Query: 259 GGACGY-GNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579 GGACGY N Y T TAALST LF +G CG C+E++CV P WC PGS + +T TN C GGWCNPP+ HFD++ P F ++AQ AGIVPV YRR P Sbjct: 71 GGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVP 179
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.376e-25 Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 1 Query: 247 INYSGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 +N GGACGYG+L YG TA +S ALF G +CG C+E++CVN WC GS + VTAT+FC GGWCN P++HF++S+ F ++A+ KA IVPV +RR Sbjct: 48 LNDGGGACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRR 158
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 6.830e-25 Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1 Query: 256 SGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 +GGACGYG+L + +A LS LFN G SCGAC E++CVN RWC G S+ VTAT+FC GGWCN P++H +LS F IA+ +A ++P+ YRR Sbjct: 47 TGGACGYGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRR 154
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 7.552e-24 Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWC-RPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQY-KAGIVPVSYRR 573 GGACGY N Y G+G +TAALS LF +G SCG C++++C DP+WC R ++ VTATNFC GWCN P+ HFD+S P F +IA+ GIVPV YRR Sbjct: 45 GGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFC-----PTNNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRR 148
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.914e-17 Identity = 45/105 (42.86%), Postives = 60/105 (57.14%), Query Frame = 1 Query: 259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573 GGACGY + ++GYG TAA+S ALF+NG CGAC+E+K + ++ VTATN +HFDL+ P F IA+ K G+VPVSYR+ Sbjct: 101 GGACGYKD--ADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPPPVNGMKG---------EHFDLTMPAFLSIAEEKLGVVPVSYRK 188 HSP 2 Score: 32.3426 bits (72), Expect = 1.914e-17 Identity = 13/17 (76.47%), Postives = 13/17 (76.47%), Query Frame = 3 Query: 114 WTDAPATFYGGGDASGT 164 W D ATFYGG DASGT Sbjct: 82 WVDGHATFYGGRDASGT 98 The following BLAST results are available for this feature:
BLAST of DY260142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260142 ID=DY260142; Name=DY260142; organism=Citrus clementina; type=EST; length=1067bpback to top |