DY260143

Overview
NameDY260143
Unique NameDY260143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1014
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12409 contig Ccv1_Contig12409:404..1417. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260143 vs. ExPASy Swiss-Prot
Match: ADH1_ANAPL (Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrhynchos GN=ADH1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.842e-26
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  312 GSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNV 554
            GS  AVFGLG V             SR+I +DI+  KF +AK  G T+ +NPKDH +PI +V++ +T  GVDYSFE IG +
Sbjct:    3 GSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINSDKFAKAKELGATDCINPKDHKEPIHKVLIGMTGYGVDYSFEVIGRI 83          

HSP 2 Score: 60.077 bits (144), Expect = 8.842e-26
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 2
Query:  581 ACHKGWGTSVIVGVAASGPEISPPPFPLVTGPVWKGTAFGGFKSPSQVPWLVNQYLKKE 757
            +CH  +G SVIVGV  +   I+  P  L +G  WKG+ FGG+KS   VP LV  Y+KK+
Sbjct:   92 SCHYNYGVSVIVGVPPAAQNITFDPMLLFSGRTWKGSVFGGWKSKDSVPKLVADYMKKK 150          
BLAST of DY260143 vs. ExPASy Swiss-Prot
Match: ADHB_MYCTU (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis GN=adhB PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 6.113e-20
Identity = 58/149 (38.93%), Postives = 70/149 (46.98%), Query Frame = 3
Query:    6 LLF*AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVT 452
            L F   C +C  C++G  NLC    G   AG  + D   R    GQ +Y      TFS Y VVH  SV KIDP  P +  CL+GCGV TG G+   TA V PG  VA+ GLG V               V  ++    K D+A  FG T
Sbjct:   86 LAFIPSCGKCPSCQAGMRNLCDLGAGLL-AGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVGLGGVGMAALQGAVSAGARYVFAVEPVEWKRDQALKFGAT 233          
BLAST of DY260143 vs. ExPASy Swiss-Prot
Match: ADHB_MYCBO (Alcohol dehydrogenase B OS=Mycobacterium bovis GN=adhB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 6.113e-20
Identity = 58/149 (38.93%), Postives = 70/149 (46.98%), Query Frame = 3
Query:    6 LLF*AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVT 452
            L F   C +C  C++G  NLC    G   AG  + D   R    GQ +Y      TFS Y VVH  SV KIDP  P +  CL+GCGV TG G+   TA V PG  VA+ GLG V               V  ++    K D+A  FG T
Sbjct:   86 LAFIPSCGKCPSCQAGMRNLCDLGAGLL-AGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVGLGGVGMAALQGAVSAGARYVFAVEPVEWKRDQALKFGAT 233          
BLAST of DY260143 vs. ExPASy Swiss-Prot
Match: FADH_AMYME (NAD/mycothiol-dependent formaldehyde dehydrogenase OS=Amycolatopsis methanolica PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 5.355e-16
Identity = 57/178 (32.02%), Postives = 77/178 (43.26%), Query Frame = 3
Query:   18 AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDG-GVDYSFECIG 548
            A C +C+ CK G+   C     AT    + +         G  +   +G   F+  T+VH     K+DP A      LLGCGV  GLGA  NT  V  G  VAV G G V             +++I +D D KK + A   G T  VN  + D  + + V  LT G G D   + +G
Sbjct:   90 AVCGQCRACKRGRPQYCFSTFNATQKMTLTD---------GTELTPALGIGAFADKTLVHAGQCTKVDPAADPAVAGLLGCGVMAGLGAAVNTGAVSRGDSVAVIGCGAVGDAVIAGARLAGANKIIAVDRDAKKLEWATELGATHTVNATETD--VVEAVQALTGGFGADVVIDAVG 256          
BLAST of DY260143 vs. ExPASy Swiss-Prot
Match: XYLB_PSEPU (Aryl-alcohol dehydrogenase OS=Pseudomonas putida GN=xylB PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.319e-14
Identity = 49/176 (27.84%), Postives = 75/176 (42.61%), Query Frame = 3
Query:   24 CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGQPI-YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIG 548
            C  C  C SG    C    G    G  +    +     G  +   F G S+F+ Y + ++ +  K+    PL+ +  LGCG+ TG G+V N      GS +A+FG G V             + +I +D+   + + A   G T  +NP  +D PI+ +     D GV Y  E  G
Sbjct:   90 CGSCDACLSGDPTSCANSFGPNFMGRSVTGECTIHDHQGAEVGASFFGQSSFATYALSYERNTVKVTKDVPLELLGPLGCGIQTGAGSVLNALNPPAGSAIAIFGAGAVGLSAVMAAVVAGCTTIIAVDVKENRLELASELGATHIINPAAND-PIEAIKEIFAD-GVPYVLETSG 263          
BLAST of DY260143 vs. ExPASy Swiss-Prot
Match: TERPD_PSESP (Probable alcohol dehydrogenase OS=Pseudomonas sp. GN=terPD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.775e-11
Identity = 55/184 (29.89%), Postives = 81/184 (44.02%), Query Frame = 3
Query:   18 AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGQPIY-HFMGTSTFSQYTVVHDVSVAKIDP---QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDG-GVDYSFECIGNV 554
            A C  C  C+  + + C    GA        D     S   + I   F G S+FS   +  + ++ KID     AP++ +  LGCGV TG GAV  +  V  G    V G G V             SR+I  +    K ++A   G TE ++P + +  + + V  +T+G G DY+ EC G V
Sbjct:   66 ASCGHCASCEHERPSYCLDF-GAQNYSAQRADGPVLLSQGDEVISGFFFGQSSFSSMAMAREHNLVKIDALVDDAPIELLGPLGCGVQTGAGAVMISLDVRAGRSFLVLGGGAVGLSAVMAAKLRGCSRIIVSEPSAAKREQALALGATEVIDPLNEN--LVERVQQITEGQGCDYALECTGLV 246          
The following BLAST results are available for this feature:
BLAST of DY260143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ADH1_ANAPL8.842e-2646.91Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrh... [more]
ADHB_MYCTU6.113e-2038.93Alcohol dehydrogenase B OS=Mycobacterium tuberculo... [more]
ADHB_MYCBO6.113e-2038.93Alcohol dehydrogenase B OS=Mycobacterium bovis GN=... [more]
FADH_AMYME5.355e-1632.02NAD/mycothiol-dependent formaldehyde dehydrogenase... [more]
XYLB_PSEPU1.319e-1427.84Aryl-alcohol dehydrogenase OS=Pseudomonas putida G... [more]
TERPD_PSESP6.775e-1129.89Probable alcohol dehydrogenase OS=Pseudomonas sp. ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260143 ID=DY260143; Name=DY260143; organism=Citrus clementina; type=EST; length=1014bp
ATCCCTTGTTATTCTAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCT
GGAAAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGT
CATGATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGACAGCCTATCT
ATCACTTCATGGGAACCTCAACATTTAGCCAGTACACAGTTGTGCATGAT
GTTAGTGTTGCAAAGATTGACCCACAAGCTCCTTTGGACAAAGTATGCCT
TCTTGGCTGTGGTGTTCCTACTGGTCTTGGAGCAGTTTGGAACACTGCAA
AAGTAGAGCCGGGTTCTATAGTTGCTGTTTTTGGCCTTGGGACTGTTGGC
CTTGCTGTGGCAGAGGGTGCAAAGGCAGCTGGAGCTTCCCGTGTTATTGG
TATAGATATTGACCCCAAAAAGTTTGATAGAGCAAAGAATTTTGGAGTTA
CTGAATTTGTAAATCCCAAGGACCATGACAAACCCATTCAGCAGGTCGTT
GTCGATCTCACGGATGGTGGTGTTGACTATAGTTTTGAATGCATTGGCAA
TGTCCTCTGTGATGAGGGCAGCTTTGGAATGCCTGTCACAAGGGCTGGGG
AACCTCAGTTATTGTGGGTGTTGCTGCATCAGGTCCCGAAATATCCCCTC
CTCCTTTCCCCTTGGTGACCGGTCCTGTATGGAAAGGAACCGCTTTTGGT
GGTTTCAAGAGCCCTTCCCAAGTGCCTTGGCTTGTAAACCAGTACCTGAA
GAAAGAAAATTAAGGGTGATGAGTACCTCACCTCCACATATGACCCCTTC
GGGAAATCACCAAGGCCTTCCCTTTTATGCCTGGAGGGGAACGCCCACCC
CTGTGGGCTTTAAATGGCCGGAATGAAAAGAACTCATGAACCCCCGCAAT
AATTCCTAATAAAAAGGTAATTTTTGGGGTTTCCATGCAAAATTTCATCC
CTTTTTAGTGCAAACCGGGGAGGTGGGGAAAAAAAAACCCCCCCAATTGA
AAAAAATTTTGGCA
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