DY260146

Overview
NameDY260146
Unique NameDY260146
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1179
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1432 contig Ccv1_Contig1432:1..1179. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260146 vs. ExPASy Swiss-Prot
Match: GDL1_CARPA (GDSL esterase/lipase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.933e-12
Identity = 58/191 (30.37%), Postives = 87/191 (45.55%), Query Frame = 2
Query:  164 FIFGDSLVDNGNNNQLSSLARANYLPYG--IDFPNGPTGRFSNGKTTVDVIAQLLGFDGYIPPYSAARGQDILRGVNYASAAAGIREETGR--QLGDRISFSGQVKNYQNTVQQVVNLLGNEDQAANYLSRCIYSIGLGSNHYLNNYLPAPLLFNRSSITPPSHMQTFFIQITLHHFQ----ALYNYGARK 712
            FIFGDSL DNGN   L++   + + PYG  IDFPN   GR+S+G+   D IA+ LG     PP    R  +   GV +A+A A I     +   LGD++    Q+K+     Q+                + IY   +G+N YLN        +  +++   +  Q  F+   +   +    A+Y  G RK
Sbjct:   30 FIFGDSLYDNGNKPFLATDVPSTFWPYGLSIDFPN---GRWSDGRIVPDFIAEFLGIP--FPPPVLDRSANFSSGVTFATADATILGTPPQTLTLGDQVKAFAQIKSTWTDAQR---------------QKGIYMFYIGANDYLN--------YTNANLNATAQQQEAFVSQVIAKLKDQLLAIYGLGGRK 192          
BLAST of DY260146 vs. ExPASy Swiss-Prot
Match: GDL8_ARATH (GDSL esterase/lipase At1g28590 OS=Arabidopsis thaliana GN=At1g28590 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.890e-11
Identity = 57/194 (29.38%), Postives = 88/194 (45.36%), Query Frame = 2
Query:  170 FGDSLVDNGNNNQLSS---LARANYLPYGIDFPNGPTGRFSNGKTTVDVIAQLLGFDGYIPPYSAARGQDILRGVNYASAAA-----GIREETG-RQLGDRISFSGQVKNYQNTVQQVVNLLGNEDQAANYLSRCIYSIG-LGSNHYLNNYLPAPLLFNRSSITPPSHMQTFFIQITLHHFQALYNYGARKICV 721
            FGDS+ D GN   LS    L  + + PYG  F + PTGR+S+G+  +D IA+ LGF   +PP+   +  +  +GVN+A A A        EE G       +S S Q++++    + + NL G+     + +   +  +G +G N Y  N+     LF R  +     +  F I         L   G R   V
Sbjct:   40 FGDSIADTGNLLGLSDPNDLPASAFPPYGETFFHHPTGRYSDGRLIIDFIAEFLGFP-LVPPFYGCQNANFKKGVNFAVAGATALEPSFLEERGIHSTITNVSLSVQLRSF---TESLPNLCGSPSDCRDMIENALILMGEIGGNDY--NF----ALFQRKPVKEVEELVPFVIATISSAITELVCMGGRTFLV 223          
BLAST of DY260146 vs. ExPASy Swiss-Prot
Match: GDL40_ARATH (GDSL esterase/lipase At2g27360 OS=Arabidopsis thaliana GN=At2g27360 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.775e-11
Identity = 56/194 (28.87%), Postives = 90/194 (46.39%), Query Frame = 2
Query:  170 FGDSLVDNGNNNQLSS---LARANYLPYGIDFPNGPTGRFSNGKTTVDVIAQLLGFDGYIPPYSAARGQDILRGVNYASAAA-----GIREETGRQLG-DRISFSGQVKNYQNTVQQVVNLLGNEDQAANYLSRCIYSIG-LGSNHYLNNYLPAPLLFNRSSITPPSHMQTFFIQITLHHFQALYNYGARKICV 721
            FGDS+ D GN   LSS   L  + + PYG  F + P+GRFS+G+  +D IA+ LG   ++PP+  ++  +  +GVN+A   A      + EE G       IS   Q+K+++ ++  +     +     + +      IG +G N Y  N+     LF+R +I     +    I         L + GAR   V
Sbjct:   37 FGDSITDTGNLLGLSSPNDLPESAFPPYGETFFHHPSGRFSDGRLIIDFIAEFLGIP-HVPPFYGSKNGNFEKGVNFAVGGATALECSVLEEKGTHCSQSNISLGNQLKSFKESLPYLCG--SSSPDCRDMIENAFILIGEIGGNDY--NF----PLFDRKNIEEVKELVPLVITTISSAISELVDMGARTFLV 221          
BLAST of DY260146 vs. ExPASy Swiss-Prot
Match: GDL6_ARATH (GDSL esterase/lipase At1g28570 OS=Arabidopsis thaliana GN=At1g28570 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.930e-11
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  170 FGDSLVDNGNNNQLS---SLARANYLPYGIDFPNGPTGRFSNGKTTVDVIAQLLGFDGYIPPYSAARGQDILRGVNYASAAA-----GIREETGRQLG-DRISFSGQVKNYQNTVQQVVNLLGNEDQAANYLSRCIYSIG-LGSNHY 580
            FGDS+ D GN   LS   +L +  +LPYG  F + PTGRFSNG+  +D IA+ LGF   +PP+  ++  +  +GVN+A   A        EE G       +S + Q+ +++   + + NL  +     + +   +  +G +G N Y
Sbjct:   38 FGDSIADTGNLLALSDPTNLPKVAFLPYGETFFHHPTGRFSNGRLIIDFIAEFLGFP-LVPPFYGSQNANFEKGVNFAVGGATALERSFLEERGIHFPYTNVSLAVQLSSFK---ESLPNLCVSPSDCRDMIENSLILMGEIGGNDY 180          
BLAST of DY260146 vs. ExPASy Swiss-Prot
Match: GDL9_ARATH (GDSL esterase/lipase At1g28600 OS=Arabidopsis thaliana GN=At1g28600 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.409e-11
Identity = 55/201 (27.36%), Postives = 89/201 (44.28%), Query Frame = 2
Query:  146 PQVPCYFIFGDSLVDNGNNNQLSS---LARANYLPYGIDFPNGPTGRFSNGKTTVDVIAQLLGFDGYIPPYSAARGQDILRGVNYASAAA-----GIREETGRQLGDRISFSGQVKNYQNTVQQVVNLLGNEDQAANYLSRCIYSIG-LGSNHYLNNYLPAPLLFNRSSITPPSHMQTFFIQITLHHFQALYNYGARKICV 721
            P       FGDS+ D GN   LS    L    + PYG  F + PTGR  +G+  +D IA+ +G   Y+PPY  ++ ++  +GVN+A A A        ++ G Q    +S   Q+K+++ ++    NL G+     + +   +  +G +G N Y  N+      FNR  +     +  F I         L   G +   V
Sbjct:   27 PNFKSIISFGDSIADTGNLVGLSDRNQLPVTAFPPYGETFFHHPTGRSCDGRIIMDFIAEFVGLP-YVPPYFGSKNRNFDKGVNFAVAGATALKSSFLKKRGIQPHTNVSLGVQLKSFKKSLP---NLCGSPSDCRDMIGNALILMGEIGGNDY--NF----PFFNRKPVKEVEELVPFVIASISSTITELIGMGGKTFLV 217          
The following BLAST results are available for this feature:
BLAST of DY260146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
GDL1_CARPA9.933e-1230.37GDSL esterase/lipase OS=Carica papaya PE=1 SV=1[more]
GDL8_ARATH2.890e-1129.38GDSL esterase/lipase At1g28590 OS=Arabidopsis thal... [more]
GDL40_ARATH3.775e-1128.87GDSL esterase/lipase At2g27360 OS=Arabidopsis thal... [more]
GDL6_ARATH4.930e-1131.97GDSL esterase/lipase At1g28570 OS=Arabidopsis thal... [more]
GDL9_ARATH8.409e-1127.36GDSL esterase/lipase At1g28600 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260146 ID=DY260146; Name=DY260146; organism=Citrus clementina; type=EST; length=1179bp
TCAATTTTGATCTTTCCTCATCTCATCTGGGTTTTAGAATTTGTTTCCTC
TTTCGGGCTTGATGGATTTAAGAAAATGGTGGGTGGTGATGGTGTTGTTG
GTTTTGATCAATATACAGAATTATTATTATGGGGCTAAAGCAGCGCCTCA
AGTGCCTTGCTACTTCATATTTGGGGATTCATTGGTGGATAACGGGAATA
ATAATCAACTATCTTCATTGGCTAGAGCTAATTATTTGCCTTATGGAATT
GACTTCCCTAATGGTCCTACAGGAAGATTTTCCAATGGCAAAACTACCGT
CGATGTCATTGCCCAACTTCTGGGCTTCGACGGTTACATTCCTCCATATT
CGGCTGCAAGAGGTCAGGATATACTCAGAGGAGTCAATTATGCATCTGCA
GCTGCTGGTATCAGGGAGGAAACTGGTCGACAGCTGGGAGATCGAATCAG
TTTTAGTGGGCAGGTAAAGAATTACCAAAACACGGTTCAGCAAGTAGTGA
ACTTACTAGGAAATGAAGATCAAGCTGCAAATTACCTGAGCCGATGCATA
TACTCAATCGGATTAGGCAGCAACCACTACCTCAACAACTACCTCCCAGC
CCCTCTATTATTCAACCGGTCGTCCATTACACCCCCGAGCCATATGCAGA
CCTTCTTTATTCAAATTACACTCCACCACTTTCAGGCGTTGTACAACTAT
GGGGCAAGGAAAATTTGTGTTGATTGGAGTGGAACAAATGGGGGGCCCCC
CCAATCATTTGGCTCAAAAAATCCCAAAAGGAAAAACTTTGTTGCCAAAG
ATGGAATGACCCAACCTAAATTTCAAAAAAAGGCCCAAAGGGCCTCCGTT
TAAAAATTTAAACACAACAATTCGAAGCCCAATTTTTCTCACATCCAGGT
TTTGGGGTTTTCCCCAGAAATACAACCCACCCCCCCCCCCTATATTTTTT
AAAGATTACAAAATTGGGGGTGCGTGTGGGTTTGAAAAAAAAAAAAGGGG
AAAATTTATTCTTTTTCCTCCCTCCTCAAAAACCACCCCTCCCAACAAAG
AGAAGGGGAAAATTTGTGTTTTTGGAGGGTTCTTTTCATTCCTATATGGA
AAACGGCGTATAAAAAAATAAAACTCTCTCCACCCCAAAATTTTTATTCT
CTTCTTTTGATATATATCTCTTATTCTAA
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